Abstract
We describe here a standard protocol for determining the phosphorylation status of protein multiplexes using antibody arrays and a biotinylated Phos-tag with a dodeca(ethylene glycol) spacer (Phos-tag Biotin). The procedure is based on an antibody microarray technique used in conjunction with an enhanced chemiluminescence system, and it permits the simultaneous and highly sensitive detection of multiple phosphoproteins in a cell lysate. By using this procedure, we have demonstrated the quantitative detection of the entire phosphorylation status of a target protein involved in intracellular signaling.
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References
Singh V, Ram M, Kumar R et al (2017) Phosphorylation: implications in cancer. Protein J 36:1–16
Liu J, Qian C, Cao X (2016) Post-translational modification control of innate immunity. Immunity 45:15–30
Wang Y, Mandelknow E (2016) Tau in physiology and pathology. Nat Rev Neurosci 17:5–21
Kinoshita E, Takahashi M, Takeda H et al (2004) Recognition of phosphate monoester dianion by an alkoxide-bridged dinuclear zinc(II) complex. Dalton Trans 8:1189–1193
Kinoshita E, Yamada A, Takeda H et al (2005) Novel immobilized zinc(II) affinity chromatography for phosphopeptides and phosphorylated proteins. J Sep Sci 28:155–162
Kinoshita-Kikuta E, Kinoshita E, Yamada A et al (2006) Enrichment of phosphorylated proteins from cell lysate using a novel phosphate-affinity chromatography at physiological pH. Proteomics 6:5088–5095
Kinoshita-Kikuta E, Kinoshita E, Koike T (2009) Phos-tag beads as an immunoblotting enhancer for selective detection of phosphoproteins in cell lysates. Anal Biochem 389:83–85
Kinoshita-Kikuta E, Yamada A, Inoue C et al (2010) A novel phosphate-affinity bead with immobilized Phos-tag for separation and enrichment of phosphopeptides and phosphoproteins. J Integr OMICS 1:157–169
Tsunehiro M, Meki Y, Matsuoka K et al (2013) A Phos-tag-based magnetic-bead method for rapid and selective separation of phosphorylated biomolecules. J Chromatogr B Anal Technol Biomed Life Sci 925:86–94
Yuan ET, Ino Y, Kawaguchi M et al (2017) A Phos-tag-based micropipette-tip method for rapid and selective enrichment of phosphopeptides. Electrophoresis 38:2447–2455
Kinoshita-Kikuta E, Aoki Y, Kinoshita E et al (2007) Label-free kinase profiling using phosphate affinity polyacrylamide gel electrophoresis. Mol Cell Proteomics 6:356–366
Kinoshita E, Kinoshita-Kikuta E, Matsubara M et al (2008) Separation of phosphoprotein isotypes having the same number of phosphate groups using phosphate-affinity SDS-PAGE. Proteomics 8:2994–3003
Kinoshita E, Kinoshita-Kikuta E, Matsubara M et al (2009) Two-dimensional phosphate-affinity gel electrophoresis for the analysis of phosphoprotein isotypes. Electrophoresis 30:550–559
Kinoshita E, Kinoshita-Kikuta E, Ujihara H et al (2009) Mobility shift detection of phosphorylation on large proteins using a Phos-tag SDS-PAGE gel strengthened with agarose. Proteomics 9:4098–4101
Kinoshita E, Kinoshita-Kikuta E, Koike T (2009) Separation and detection of large phosphoproteins using Phos-tag SDS-PAGE. Nat Protoc 4:1513–1521
Kinoshita E, Kinoshita-Kikuta E (2011) Improved Phos-tag SDS-PAGE under neutral pH conditions for advanced protein phosphorylation profiling. Proteomics 11:319–323
Kinoshita E, Kinoshita-Kikuta E, Koike T (2012) Phos-tag SDS-PAGE systems for phosphorylation profiling of proteins with a wide range of molecular masses under neutral pH conditions. Proteomics 12:192–202
Kinoshita-Kikuta E, Kinoshita E, Koike T (2012) Separation and identification of four distinct serine-phosphorylation states of ovalbumin by Phos-tag affinity electrophoresis. Electrophoresis 33:849–855
Kinoshita-Kikuta E, Kinoshita E, Koike T (2012) A laborsaving, timesaving, and more reliable strategy for separation of low-molecular-mass phosphoproteins in Phos-tag affinity electrophoresis. Int J Chem (Mumbai, India) 4(5):1–8
Kinoshita E, Kinoshita-Kikuta E, Shiba A et al (2014) Profiling of protein thiophosphorylation by Phos-tag affinity electrophoresis: evaluation of adenosine 5′-O-(3-thiotriphosphate) as a phosphoryl donor in protein kinase reactions. Proteomics 14:668–679
Kinoshita-Kikuta E, Kinoshita E, Koike T (2014) Identification of two phosphorylated species of β-catenin involved in the ubiquitin-proteasome pathway by using two-dimensional Phos-tag affinity electrophoresis. J Electrophoresis 58:1–4
Kinoshita-Kikuta E, Kinoshita E, Matsuda A, Koike T (2014) Tips on improving the efficiency of electrotransfer of target proteins from Phos-tag SDS-PAGE gel. Proteomics 14:2437–2442
Kinoshita-Kikuta E, Kinoshita E, Eguchi Y et al (2015) Functional characterization of the receiver domain for phosphorelay control in hybrid sensor kinases. PLoS One 10:e0132598
Sugiyama Y, Katayama S, Kameshita I et al (2015) Expression and phosphorylation state analysis of intracellular protein kinases using Multi-PK antibody and Phos-tag SDS-PAGE. MethodsX 2:469–474
Kinoshita-Kikuta E, Kinoshita E, Eguchi Y, Koike T (2016) Validation of cis and trans modes in multistep phosphotransfer signaling of bacterial tripartite sensor kinases by using Phos-tag SDS-PAGE. PLoS One 11:e0148294
Kinoshita E, Kinoshita-Kikuta E, Kubota Y et al (2016) A Phos-tag SDS-PAGE method that effectively uses phosphoproteomic data for profiling the phosphorylation dynamics of MEK1. Proteomics 16:1825–1836
Kinoshita E, Kinoshita-Kikuta E, Karata K et al (2017) Specific glutamic acid residues in targeted proteins induce exaggerated retardations in Phos-tag SDS-PAGE migration. Electrophoresis 38:1139–1146
Kinoshita-Kikuta E, Kinoshita E, Ueda S et al (2019) Increase in constitutively active MEK1 species by introduction of MEK1 mutations identified in cancers. Biochim Biophys Acta Proteins Proteomics 1867:62–70
Uezato Y, Kameshita I, Morisawa K et al (2019) A method for profiling the phosphorylation state of tyrosine protein kinases. Biochim Biophys Acta Proteins Proteomics 1867:71–75
Kinoshita E, Kinoshita-Kikuta E, Takiyama K et al (2006) Phosphate-binding tag, a new tool to visualize phosphorylated proteins. Mol Cell Proteomics 5:749–757
Inamori K, Kyo M, Nishiya Y et al (2005) Detection and quantification of on-chip phosphorylated peptides by surface plasmon resonance imaging techniques using a phosphate capture molecule. Anal Chem 77:3979–3985
Nakanishi T, Ando E, Furuta M et al (2007) Identification on membrane and characterization of phosphoproteins using an alkoxide-bridged dinuclear metal complex as a phosphate binding tag molecule. J Biomol Tech 18:278–286
Kinoshita E, Kinoshita-Kikuta E, Sugiyama Y et al (2012) Highly sensitive detection of protein phosphorylation by using improved Phos-tag Biotin. Proteomics 12:932–937
Kinoshita E, Kinoshita-Kikuta E, Koike T (2013) Phos-tag-based microarray techniques advance phosphoproteomic. Proteomics Bioinf S6. https://doi.org/10.4172/jpb.S6-008
Kinoshita E, Kinoshita-Kikuta E, Koike T (2013) Sandwich assay for phosphorylation of protein multiplexes by using antibodies and Phos-tag. Anal Biochem 438:104–106
Kinoshita E, Kinoshita-Kikuta E, Koike T (2015) Advances in Phos-tag-based methodologies for separation and detection of the phosphoproteome. Biochim Biophys Acta Proteins Proteomics 1854:601–608
Kinoshita-Kikuta E, Kinoshita E, Koike T (2016) Phosphopeptide detection with biotin-labeled Phos-tag. Method Mol Biol 1355:17–29
Acknowledgments
This work was supported in part by KAKENHI Grants 19K07147 to E.K., 18K06596 to E.K.-K., and 17K08237 to T.K.
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Kinoshita, E., Kinoshita-Kikuta, E., Koike, T. (2021). Determining Protein Phosphorylation Status Using Antibody Arrays and Phos-Tag Biotin. In: Whittaker, K.C., Huang, RP. (eds) Antibody Arrays. Methods in Molecular Biology, vol 2237. Humana, New York, NY. https://doi.org/10.1007/978-1-0716-1064-0_18
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DOI: https://doi.org/10.1007/978-1-0716-1064-0_18
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