Abstract
HbE/β-thalassemia is one of the most common thalassemic syndromes in Southeast Asia and Thailand. Patients have mutations in β hemoglobin (HBB) gene resulting in decreased and/or abnormal production of β hemoglobin. Here, we describe a protocol for CRISPR/Cas9-mediated gene correction of the mutated hemoglobin E from one allele of the HBB gene by homology-directed repair (HDR) in HbE/β-thalassemia patient-derived induced pluripotent stem cells (iPSCs) using a CRISPR/Cas9 plasmid-based transfection method and a single-stranded DNA oligonucleotide (ssODN) repair template harboring the correct nucleotides. Our strategy allows the seamless HbE gene correction with the editing efficiency (HDR) up to 3%, as confirmed by Sanger sequencing. This protocol provides a simple one-step genetic correction of HbE mutation in the patient-derived iPSCs. Further differentiation of the corrected iPSCs into hematopoietic stem/progenitor cells will provide an alternative renewable source of cells for the application in autologous transplantation in the future.
Access this chapter
Tax calculation will be finalised at checkout
Purchases are for personal use only
References
Ruangvutilert P (2007) Thalassemia is a preventable genetic disease. Siriraj Med J 59:330–333
Ye L, Chang JC, Lin C, Sun X, Yu J, Kan YW (2009) Induced pluripotent stem cells offer new approach to therapy in thalassemia and sickle cell anemia and option in prenatal diagnosis in genetic diseases. Proc Natl Acad Sci U S A 106:9826–9830
Olivieri NF, Pakbaz Z, Vichinsky E (2011) Hb E/beta-thalassaemia: a common & clinically diverse disorder. Indian J Med Res 134:522–531
Papapetrou EP, Lee G, Malani N, Setty M, Riviere I, Tirunagari LMS, Kadota K, Roth SL, Giardina P, Viale A et al (2011) Genomic safe harbors permit high β-globin transgene expression in thalassemia induced pluripotent stem cells. Nat Biotechnol 29:73–81
Tubsuwan A, Abed S, Deichmann A, Kardel MD, Bartholoma C, Cheung A, Negre O, Kadri Z, Fucharoen S, von Kalle C et al (2013) Parallel assessment of globin lentiviral transfer in induced pluripotent stem cells and adult hematopoietic stem cells derived from the same transplanted beta-thalassemia patient. Stem Cells 31:1785–1794. https://doi.org/10.1002/stem.1436
Liu Y, Yang Y, Kang X, Lin B, Yu Q, Song B, Gao G, Chen Y, Sun X, Li X et al (2017) One-step biallelic and scarless correction of a beta-thalassemia mutation in patient-specific iPSCs without drug selection. Mol Ther Nucleic Acids 6:57–67. https://doi.org/10.1016/j.omtn.2016.11.010
Niu X, He W, Song B, Ou Z, Fan D, Chen Y, Fan Y, Sun X (2016) Combining single strand oligodeoxynucleotides and CRISPR/Cas9 to correct gene mutations in beta-thalassemia-induced pluripotent stem cells. J Biol Chem 291:16576–16585. https://doi.org/10.1074/jbc.M116.719237
Xie F, Ye L, Chang JC, Beyer AI, Wang J, Muench MO, Kan YW (2014) Seamless gene correction of beta-thalassemia mutations in patient-specific iPSCs using CRISPR/Cas9 and piggyBac. Genome Res 24:1526–1533. https://doi.org/10.1101/gr.173427.114
Song B, Fan Y, He W, Zhu D, Niu X, Wang D, Ou Z, Luo M, Sun X (2015) Improved hematopoietic differentiation efficiency of gene-corrected beta-thalassemia induced pluripotent stem cells by CRISPR/Cas9 system. Stem Cells Dev 24:1053–1065. https://doi.org/10.1089/scd.2014.0347
Wattanapanitch M, Damkham N, Potirat P, Trakarnsanga K, Janan M, Yaowalak UP, Kheolamai P, Klincumhom N, Issaragrisil S (2018) One-step genetic correction of hemoglobin E/beta-thalassemia patient-derived iPSCs by the CRISPR/Cas9 system. Stem Cell Res Ther 9:46. https://doi.org/10.1186/s13287-018-0779-3
Ran FA, Hsu PD, Wright J, Agarwala V, Scott DA, Zhang F (2013) Genome engineering using the CRISPR-Cas9 system. Nat Protoc 8:2281–2308. https://doi.org/10.1038/nprot.2013.143
Byrne SM, Mali P, Church GM (2014) Genome editing in human stem cells. Methods Enzymol 546:119–138. https://doi.org/10.1016/B978-0-12-801185-0.00006-4
Acknowledgments
M.W. is supported by Chalermphrakiat Grant, Faculty of Medicine Siriraj Hospital, Mahidol University, Thailand.
Author information
Authors and Affiliations
Corresponding author
Editor information
Editors and Affiliations
Rights and permissions
Copyright information
© 2021 Springer Science+Business Media, LLC, part of Springer Nature
About this protocol
Cite this protocol
Wattanapanitch, M. (2021). Correction of Hemoglobin E/Beta-Thalassemia Patient-Derived iPSCs Using CRISPR/Cas9. In: Narayanan, K. (eds) Bio-Carrier Vectors. Methods in Molecular Biology, vol 2211. Humana, New York, NY. https://doi.org/10.1007/978-1-0716-0943-9_14
Download citation
DOI: https://doi.org/10.1007/978-1-0716-0943-9_14
Published:
Publisher Name: Humana, New York, NY
Print ISBN: 978-1-0716-0942-2
Online ISBN: 978-1-0716-0943-9
eBook Packages: Springer Protocols