Skip to main content

Immunochemical Detection of Modified Cytosine Species in Lampbrush Chromatin

  • Protocol
  • First Online:
DNA Modifications

Part of the book series: Methods in Molecular Biology ((MIMB,volume 2198))

Abstract

The lampbrush chromosomes found in the giant nucleus or germinal vesicle (GV) of amphibian oocytes provide unique opportunities for discrete closed and open chromatin structural domains to be directly observable by simple light microscopy. Moreover, the method described here for preparing spreads of lampbrush chromatin for immunostaining enables a straightforward approach to establishing the distributions of modified nucleotides within and between structurally and functionally distinctive chromatin domains.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Protocol
USD 49.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 139.00
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 179.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book
USD 299.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

References

  1. Callan HG (1986) Lampbrush chromosomes. In: Molecular biology, biochemistry and biophysics, vol 36. Springer-Verlag, Berlin

    Google Scholar 

  2. Gall JG (2014) Transcription in the Xenopus oocyte nucleus. In: Kloc M, Kubiak JZ (eds) Xenopus development. Wiley, Oxford, pp 3–15

    Chapter  Google Scholar 

  3. Morgan GT (2002) Lampbrush chromosomes and associated bodies: new insights into principles of nuclear structure and function. Chromosom Res 10(3):177–200

    Article  CAS  Google Scholar 

  4. Mais C, Scheer U (2001) Molecular architecture of the amplified nucleoli of Xenopus oocytes. J Cell Sci 114:709–718

    CAS  PubMed  Google Scholar 

  5. Sommerville J, Brumwell CL, Politz JC, Pederson T (2005) Signal recognition particle assembly in relation to the function of amplified nucleoli of Xenopus oocytes. J Cell Sci 118:1299–1307

    Article  CAS  Google Scholar 

  6. Murphy C, Wang Z, Roeder RG, Gall JG (2002) RNA polymerase III in Cajal bodies and lampbrush chromosomes of the Xenopus oocyte nucleus. Mol Biol Cell 13:3466–3476. https://doi.org/10.1091/mbc.E02-05-0281

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  7. Angelier N, Bonnanfant-Jaïs ML, Moreau N, Gounon P, Lavaud A (1986) DNA methylation and RNA transcriptional activity in amphibian lampbrush chromosomes. Chromosoma 94:169–182. https://doi.org/10.1007/bf00288491

    Article  CAS  Google Scholar 

  8. Morgan GT, Jones P, Bellini M (2012) Association of modified cytosines and the methylated DNA-binding protein MeCP2 with distinctive structural domains of lampbrush chromatin. Chromosom Res 20:925–942. https://doi.org/10.1007/s10577-012-9324-x

    Article  CAS  Google Scholar 

  9. Gall JG, Nizami ZF (2016) Isolation of giant lampbrush chromosomes from living oocytes of frogs and salamanders. J Vis Exp 118(118):e54103. https://doi.org/10.3791/54103

    Article  Google Scholar 

  10. Gall JG, Murphy C, Callan HG, Wu ZA (1991) Lampbrush chromosomes. Methods Cell Biol 36:149–166

    Article  CAS  Google Scholar 

  11. Dumont JN (1972) Oogenesis in Xenopus laevis (Daudin). I. Stages of oocyte development in laboratory maintained animals. J Morphol 136:153–179

    Article  CAS  Google Scholar 

  12. Beetschen J-C, Gautier J (1989) Oogenesis. In: Armstrong JB, Malacinski GM (eds) Developmental biology of the axolotl. Oxford University Press, New York, Oxford, pp 25–35

    Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Garry T. Morgan .

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2021 The Editor(s) (if applicable) and The Author(s), under exclusive license to Springer Science+Business Media, LLC, part of Springer Nature

About this protocol

Check for updates. Verify currency and authenticity via CrossMark

Cite this protocol

Morgan, G.T. (2021). Immunochemical Detection of Modified Cytosine Species in Lampbrush Chromatin. In: Ruzov, A., Gering, M. (eds) DNA Modifications. Methods in Molecular Biology, vol 2198. Humana, New York, NY. https://doi.org/10.1007/978-1-0716-0876-0_13

Download citation

  • DOI: https://doi.org/10.1007/978-1-0716-0876-0_13

  • Published:

  • Publisher Name: Humana, New York, NY

  • Print ISBN: 978-1-0716-0875-3

  • Online ISBN: 978-1-0716-0876-0

  • eBook Packages: Springer Protocols

Publish with us

Policies and ethics