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Branch Migration Activity of Rad54 Protein

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Homologous Recombination

Part of the book series: Methods in Molecular Biology ((MIMB,volume 2153))

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Abstract

Rad54 is a eukaryotic protein that plays an important role in homologous recombination. Rad54, a member of the Swi2/Snf2 family, binds to Holliday junctions with high specificity and promotes their branch migration in an ATP hydrolysis-dependent manner. Here we describe the methods our laboratory used to characterize the branch migration activity of Rad54. These assays are applicable for other branch migration proteins regardless of whether they have canonical helicase activity or not.

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References

  1. Jasin M, Rothstein R (2013) Repair of strand breaks by homologous recombination. Cold Spring Harb Perspect Biol 5:a012740. https://doi.org/10.1101/cshperspect.a012740

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  2. Kowalczykowski SC (2015) An overview of the molecular mechanisms of Recombinational DNA repair. Cold Spring Harb Perspect Biol 7(11):a016410. https://doi.org/10.1101/cshperspect.a016410

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  3. Mehta A, Haber JE (2014) Sources of DNA double-strand breaks and models of recombinational DNA repair. Cold Spring Harb Perspect Biol 6:a016428. https://doi.org/10.1101/cshperspect.a016428

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  4. Kowalczykowski SC (2008) Structural biology: snapshots of DNA repair. Nature 453:463–466

    Article  CAS  Google Scholar 

  5. Amitani I, Baskin RJ, Kowalczykowski SC (2006) Visualization of Rad54, a chromatin remodeling protein, translocating on single DNA molecules. Mol Cell 23:143–148

    Article  CAS  Google Scholar 

  6. Bugreev DV, Mazina OM, Mazin AV (2006) Rad54 protein promotes branch migration of holliday junctions. Nature 442:590–593

    Article  CAS  Google Scholar 

  7. Mazina OM, Rossi MJ, Thomaa NH, Mazin AV (2007) Interactions of human Rad54 protein with branched DNA molecules. J Biol Chem 282:21068–21080

    Article  CAS  Google Scholar 

  8. Constantinou A, West SC (2004) Holliday junction branch migration and resolution assays. Methods Mol Biol 262:239–253

    CAS  PubMed  Google Scholar 

  9. Petukhova G, Stratton S, Sung P (1998) Catalysis of homologous DNA pairing by yeast Rad51 and Rad54 proteins. Nature 393:91–94. https://doi.org/10.1038/30037

    Article  CAS  PubMed  Google Scholar 

  10. Bugreev DV, Mazina OM, Mazin AV (2006) Analysis of branch migration activities of proteins using synthetic DNA substrates. Nat Protoc. https://doi.org/10.1038/nprot.2006.217

  11. Mazina OM, Rossi MJ, Deakyne JS, Huang F, Mazin AV (2012) Polarity and bypass of DNA heterology during branch migration of Holliday junctions by human RAD54, BLM, and RECQ1 proteins. J Biol Chem 287:11820–11832. https://doi.org/10.1074/jbc.M112.341347

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  12. Rossi MJ, Mazina OM, Bugreev DV, Mazin AV (2010) Analyzing the branch migration activities of eukaryotic proteins. Methods 51:336–346. https://doi.org/10.1016/j.ymeth.2010.02.010

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  13. Mazina OM, Mazin AV (2018) Reconstituting the 4-Strand DNA Strand exchange. Methods Enzymol 600:285–305. https://doi.org/10.1016/bs.mie.2017.11.013

    Article  CAS  PubMed  PubMed Central  Google Scholar 

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Acknowledgments

We thank Dr. Dmitry Bugreev for his invaluable contribution to developing substrates and methods for the analysis of Rad54 branch migration activity. This work was supported by the National Cancer Institute of the National Institutes of Health (NIH) grant numbers CA188347, P30CA056036, and the Drexel-Coulter Program Award (to AVM).

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Correspondence to Alexander V. Mazin .

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Mazina, O.M., Mazin, A.V. (2021). Branch Migration Activity of Rad54 Protein. In: Aguilera, A., Carreira, A. (eds) Homologous Recombination. Methods in Molecular Biology, vol 2153. Humana, New York, NY. https://doi.org/10.1007/978-1-0716-0644-5_11

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  • DOI: https://doi.org/10.1007/978-1-0716-0644-5_11

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  • Publisher Name: Humana, New York, NY

  • Print ISBN: 978-1-0716-0643-8

  • Online ISBN: 978-1-0716-0644-5

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