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Cytogenetic Testing and Chromosomal Disorders

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Cytogenetic Testing

It took until 1956 before the correct number of human chromosomes of 46/cell was determined by Tjio and Levan. The discovery of the correct number of human chromosomes lead to the subsequent discovery that trisomy 21 is the cause of Down syndrome. Soon thereafter, a series of associations of different birth defects with specific chromosomal imbalances became apparent. First, the chromosomes 13 trisomy (Patau syndrome), trisomy 18 (Edwards syndrome), and monosomy and trisomy X syndromes were identified. Subsequently, smaller segmental chromosomal imbalances such as 5p- and 4p- were proven to cause birth defects. These associations launched cytogenetic genetic testing as a routine diagnostic tool and resulted in systematic screening for children with birth defects. These screenings, in turn, resulted in the identification of thousands of chromosomal imbalances associated with specific syndromic features.

Initially, chromosome studies were performed using simple...

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References

  • Albertson DG, Pinkel D (2003) Genomic microarrays in human genetic disease and cancer. Hum Mol Genet 12(Spec No 2):R145–R152

    Article  PubMed  CAS  Google Scholar 

  • Angell R (1997) First-meiotic-division nondisjunction in human oocytes. Am J Hum Genet 61:23–32

    Article  PubMed  CAS  Google Scholar 

  • Bailey JA, Yavor AM, Massa HF et al (2001) Segmental duplications:organization and impact within the current human genome project assembly. Genome Res 11:1005–1017

    Article  PubMed  CAS  Google Scholar 

  • Bailey JA, Gu Z, Clark RA et al (2002) Recent segmental duplications in the human genome. Science 297:1003–1007

    Article  PubMed  CAS  Google Scholar 

  • Balikova I, Menten B, de Ravel T et al (2007) Subtelomeric imbalances in phenotypically normal individuals. Hum Mutat 28:958–967

    Article  PubMed  CAS  Google Scholar 

  • Balikova I, Martens K, Melotte C et al (2008) Autosomal-dominant microtia linked to five tandem copies of a copy-number-variable region at chromosome 4p16. Am J Hum Genet 82:181–187

    Article  PubMed  CAS  Google Scholar 

  • Balikova I, Lehesjoki AE, de Ravel TJ et al (2009) Deletions in the VPS13B (COH1) gene as a cause of Cohen syndrome. Hum Mutat 30:E845–E854

    Article  PubMed  CAS  Google Scholar 

  • Ballif BC, Kashork CD, Saleki R et al (2006a) Detecting sex chromosome anomalies and common triploidies in products of conception by array-based comparative genomic hybridization. Prenat Diagn 26:333–339

    Article  PubMed  CAS  Google Scholar 

  • Ballif BC, Rorem EA, Sundin K et al (2006b) Detection of low-level mosaicism by array CGH in routine diagnostic specimens. Am J Med Genet A 140:2757–2767

    PubMed  Google Scholar 

  • Ballif BC, Hornor SA, Sulpizio SG et al (2007) Development of a high-density pericentromeric region BAC clone set for the detection and characterization of small supernumerary marker chromosomes by array CGH. Genet Med 9:150–162

    Article  PubMed  CAS  Google Scholar 

  • Ballif BC, Theisen A, Coppinger J et al (2008) Expanding the clinical phenotype of the 3q29 microdeletion syndrome and characterization of the reciprocal microduplication. Mol Cytogenet 1:8

    Article  PubMed  CAS  Google Scholar 

  • Baptista J, Mercer C, Prigmore E et al (2008) Breakpoint mapping and array CGH in translocations:comparison of a phenotypically normal and an abnormal cohort. Am J Hum Genet 82:927–936

    Article  PubMed  CAS  Google Scholar 

  • Barber JC (2005) Directly transmitted unbalanced chromosome abnormalities and euchromatic variants. J Med Genet 42:609–629

    Article  PubMed  CAS  Google Scholar 

  • Bauters M, Van Esch H, Friez MJ et al (2008) Nonrecurrent MECP2 duplications mediated by genomic architecture-driven DNA breaks and break-induced replication repair. Genome Res 18:847–858

    Article  PubMed  CAS  Google Scholar 

  • Benn PA, Hsu LYF (2004) Prenatal diagnosis of chromosomal abnormalities through amniocentesis. In: Milunsky A (ed) Genetic disorders and the fetus: diagnosis, prevention, and treatment, 5th edn. Johns Hopkins University Press, Baltimore, p 214

    Google Scholar 

  • Ben-Shachar S, Ou Z, Shaw CA et al (2008) 22q11.2 distal deletion: a recurrent genomic disorder distinct from DiGeorge syndrome and velocardiofacial syndrome. Am J Hum Genet 82:214–221

    Article  PubMed  CAS  Google Scholar 

  • Breckpot J, Takiyama Y, Thienpont B et al (2008) A novel genomic disorder: a deletion of the SACS gene leading to spastic ataxia of Charlevoix-Saguenay. Eur J Hum Genet 16:1050–1054

    Article  PubMed  CAS  Google Scholar 

  • Browne CE, Dennis NR, Maher E et al (1997) Inherited interstitial duplications of proximal 15q: genotype-phenotype correlations. Am J Hum Genet 61:1342–1352

    Article  PubMed  CAS  Google Scholar 

  • Brunetti-Pierri N, Berg JS, Scaglia F et al (2008) Recurrent reciprocal 1q21.1 deletions and duplications associated with microcephaly or macrocephaly and developmental and behavioral abnormalities. Nat Genet 40:1466–1471

    Article  PubMed  CAS  Google Scholar 

  • Buysse K, Crepel A, Menten B et al (2008) Mapping of 5q35 chromosomal rearrangements within a genomically unstable region. J Med Genet 45:672–678

    Article  PubMed  CAS  Google Scholar 

  • Buysse K, Delle Chiaie B, Van Coster R et al (2009a) Challenges for CNV interpretation in clinical molecular karyotyping: lessons learned from a 1001 sample experience. Eur J Med Genet 52:398–403

    Article  PubMed  Google Scholar 

  • Buysse K, Reardon W, Mehta L et al (2009b) The 12q14 microdeletion syndrome: additional patients and further evidence that HMGA2 is an important genetic determinant for human height. Eur J Med Genet 52:101–107

    Article  PubMed  Google Scholar 

  • Cai WW, Mao JH, Chow CW et al (2002) Genome-wide detection of chromosomal imbalances in tumors using BAC microarrays. Nat Biotechnol 20:393–396

    Article  PubMed  CAS  Google Scholar 

  • Carelle-Calmels N, Saugier-Veber P, Girard-Lemaire F et al (2009) Genetic compensation in a human genomic disorder. N Engl J Med 360:1211–1216

    Article  PubMed  CAS  Google Scholar 

  • Caspersson T, Farber S, Foley GE et al (1968) Chemical differentiation along metaphase chromosomes. Exp Cell Res 49:219–222

    Article  PubMed  CAS  Google Scholar 

  • Caspersson T, Zech L, Johansson C (1970) Differential binding of alkylating fluorochromes in human chromosomes. Exp Cell Res 60:315–319

    Article  PubMed  CAS  Google Scholar 

  • Chelly J, Khelfaoui M, Francis F et al (2006) Genetics and pathophysiology of mental retardation. Eur J Hum Genet 14:701–713

    Article  PubMed  CAS  Google Scholar 

  • Cheung J, Estivill X, Khaja R et al (2003) Genome-wide detection of segmental duplications and potential assembly errors in the human genome sequence. Genome Biol 4:R25

    Article  PubMed  Google Scholar 

  • Conrad DF, Pinto D, Redon R et al (2010) Origins and functional impact of copy number variation in the human genome. Nature 464:704–712

    Article  PubMed  CAS  Google Scholar 

  • Consortium IS (2008) Rare chromosomal deletions and duplications increase risk of schizophrenia. Nature 455:237–241

    Article  CAS  Google Scholar 

  • Cook EH Jr, Scherer SW (2008) Copy-number variations associated with neuropsychiatric conditions. Nature 455:919–923

    Article  PubMed  CAS  Google Scholar 

  • Curry CJ, Stevenson RE, Aughton D et al (1997) Evaluation of mental retardation: recommendations of a Consensus Conference: American College of Medical Genetics. Am J Med Genet 72:468–477

    Article  PubMed  CAS  Google Scholar 

  • De Gregori M, Ciccone R, Magini P et al (2007) Cryptic deletions are a common finding in “balanced” reciprocal and complex chromosome rearrangements: a study of 59 patients. J Med Genet 44:750–762

    Article  PubMed  CAS  Google Scholar 

  • de Ravel TJ, Balikova I, Thienpont B et al (2006) Molecular karyotyping of patients with MCA/MR: the blurred boundary between normal and pathogenic variation. Cytogenet Genome Res 115:225–230

    Article  PubMed  CAS  Google Scholar 

  • de Vries BB, Pfundt R, Leisink M et al (2005) Diagnostic genome profiling in mental retardation. Am J Hum Genet 77:606–616

    Article  PubMed  CAS  Google Scholar 

  • Dhami P, Coffey AJ, Abbs S et al (2005) Exon array CGH: detection of copy-number changes at the resolution of individual exons in the human genome. Am J Hum Genet 76:750–762

    Article  PubMed  CAS  Google Scholar 

  • Duncan IW (2002) Transvection effects in Drosophila. Annu Rev Genet 36:521–556

    Article  PubMed  CAS  Google Scholar 

  • Feenstra I, Fang J, Koolen DA et al (2006) European Cytogeneticists Association Register of Unbalanced Chromosome Aberrations (ECARUCA); an online database for rare chromosome abnormalities. Eur J Med Genet 49:279–291

    Article  PubMed  CAS  Google Scholar 

  • Feuk L, Carson AR, Scherer SW (2006) Structural variation in the human genome. Nat Rev Genet 7:85–97

    Article  PubMed  CAS  Google Scholar 

  • Freeman JL, Perry GH, Feuk L et al (2006) Copy number variation: new insights in genome diversity. Genome Res 16:949–961

    Article  PubMed  CAS  Google Scholar 

  • Friedman JM, Baross A, Delaney AD et al (2006) Oligonucleotide microarray analysis of genomic imbalance in children with mental retardation. Am J Hum Genet 79:500–513

    Article  PubMed  CAS  Google Scholar 

  • Gardner RJM, Sutherland GR (2004) Chromosome abnormalities and genetic counseling, 3rd edn. Oxford University Press, New York

    Google Scholar 

  • Gersen GL, Keagle MB (2005) The principles of clinical cytogenetics. Humana, Totowa

    Book  Google Scholar 

  • Gijsbers AC, Lew JY, Bosch CA et al (2009) A new diagnostic workflow for patients with mental retardation and/or multiple congenital abnormalities: test arrays first. Eur J Hum Genet 17:1394–1402

    Article  PubMed  Google Scholar 

  • Glasson EJ, Sullivan SG, Hussain R et al (2002) The changing survival profile of people with Down’s syndrome: implications for genetic counselling. Clin Genet 62:390–393

    Article  PubMed  CAS  Google Scholar 

  • Gribble SM, Prigmore E, Burford DC et al (2005) The complex nature of constitutional de novo apparently balanced translocations in patients presenting with abnormal phenotypes. J Med Genet 42:8–16

    Article  PubMed  CAS  Google Scholar 

  • Gu W, Zhang F, Lupski JR (2008) Mechanisms for human genomic rearrangements. Pathogenetics 1:4

    Article  PubMed  CAS  Google Scholar 

  • Hannes FD, Sharp AJ, Mefford HC et al (2009) Recurrent reciprocal deletions and duplications of 16p13.11: the deletion is a risk factor for MR/MCA while the duplication may be a rare benign variant. J Med Genet 46:223–232

    Article  PubMed  CAS  Google Scholar 

  • Hassold T, Hall H, Hunt P (2007) The origin of human aneuploidy: where we have been, where we are going. Hum Mol Genet 16(Spec No. 2):R203–R208

    Article  PubMed  CAS  Google Scholar 

  • Hastings PJ, Ira G, Lupski JR (2009) A microhomology-mediated break-induced replication model for the origin of human copy number variation. PLoS Genet 5:e1000327

    Article  PubMed  CAS  Google Scholar 

  • Hinds DA, Kloek AP, Jen M et al (2006) Common deletions and SNPs are in linkage disequilibrium in the human genome. Nat Genet 38:82–85

    Article  PubMed  CAS  Google Scholar 

  • Hochstenbach R, van Binsbergen E, Engelen J et al (2009) Array analysis and karyotyping: workflow consequences based on a retrospective study of 36, 325 patients with idiopathic developmental delay in the Netherlands. Eur J Med Genet 52:161–169

    Article  PubMed  Google Scholar 

  • Hoyer J, Dreweke A, Becker C et al (2007) Molecular karyotyping in patients with mental retardation using 100 K single-nucleotide polymorphism arrays. J Med Genet 44:629–636

    Article  PubMed  CAS  Google Scholar 

  • Iafrate AJ, Feuk L, Rivera MN et al (2004) Detection of large-scale variation in the human genome. Nat Genet 36:949–951

    Article  PubMed  CAS  Google Scholar 

  • Inoue K, Osaka H, Thurston VC et al (2002) Genomic rearrangements resulting in PLP1 deletion occur by nonhomologous end joining and cause different dysmyelinating phenotypes in males and females. Am J Hum Genet 71:838–853

    Article  PubMed  Google Scholar 

  • Jacobs PA (1981) Mutation rates of structural chromosome rearrangements in man. Am J Hum Genet 33:44–54

    PubMed  CAS  Google Scholar 

  • Kallioniemi A, Kallioniemi OP, Sudar D et al (1992) Comparative genomic hybridization for molecular cytogenetic analysis of solid tumors. Science 258:818–821

    Article  PubMed  CAS  Google Scholar 

  • Kidd JM, Cooper GM, Donahue WF et al (2008) Mapping and sequencing of structural variation from eight human genomes. Nature 453:56–64

    Article  PubMed  CAS  Google Scholar 

  • Kleinjan DA, van Heyningen V (2005) Long-range control of gene expression: emerging mechanisms and disruption in disease. Am J Hum Genet 76:8–32

    Article  PubMed  CAS  Google Scholar 

  • Klopocki E, Schulze H, Strauss G et al (2007) Complex inheritance pattern resembling autosomal recessive inheritance involving a microdeletion in thrombocytopenia-absent radius syndrome. Am J Hum Genet 80:232–240

    Article  PubMed  CAS  Google Scholar 

  • Knijnenburg J, Oberstein SA, Frei K et al (2009) A homozygous deletion of a normal variation locus in a patient with hearing loss from non-consanguineous parents. J Med Genet 46:412–417

    Article  PubMed  CAS  Google Scholar 

  • Komura D, Shen F, Ishikawa S et al (2006) Genome-wide detection of human copy number variations using high-density DNA oligonucleotide arrays. Genome Res 16:1575–1584

    Article  PubMed  CAS  Google Scholar 

  • Koolen DA, Vissers LE, Pfundt R et al (2006) A new chromosome 17q21.31 microdeletion syndrome associated with a common inversion polymorphism. Nat Genet 38:999–1001

    Article  PubMed  CAS  Google Scholar 

  • Koolen DA, Pfundt R, de Leeuw N et al (2009) Genomic microarrays in mental retardation: a practical workflow for diagnostic applications. Hum Mutat 30:283–292

    Article  PubMed  Google Scholar 

  • Korbel JO, Urban AE, Affourtit JP et al (2007) Paired-end mapping reveals extensive structural variation in the human genome. Science 318:420–426

    Article  PubMed  CAS  Google Scholar 

  • Langer-Safer PR, Levine M, Ward DC (1982) Immunological method for mapping genes on Drosophila polytene chromosomes. Proc Natl Acad Sci USA 79:4381–4385

    Article  PubMed  CAS  Google Scholar 

  • Law LW, Lau TK, Fung TY et al (2009) De novo 16p13.11 microdeletion identified by high-resolution array CGH in a fetus with increased nuchal translucency. BJOG 116:339–343

    Article  PubMed  CAS  Google Scholar 

  • Lee JA, Madrid RE, Sperle K et al (2006) Spastic paraplegia type 2 associated with axonal neuropathy and apparent PLP1 position effect. Ann Neurol 59:398–403

    Article  PubMed  CAS  Google Scholar 

  • Lee JA, Carvalho CM, Lupski JR (2007) A DNA replication mechanism for generating nonrecurrent rearrangements associated with genomic disorders. Cell 131:1235–1247

    Article  PubMed  CAS  Google Scholar 

  • Lejeune J, Gautier M, Turpin R (1959) Etude des chromosomes somatiques de neuf enfants mongoliens. CR Hebd Seances Acad Sci 248:1721–1722

    CAS  Google Scholar 

  • Lieber MR (2008) The mechanism of human nonhomologous DNA end joining. J Biol Chem 283:1–5

    Article  PubMed  CAS  Google Scholar 

  • Lieber MR, Ma Y, Pannicke U et al (2003) Mechanism and regulation of human non-homologous DNA end-joining. Nat Rev Mol Cell Biol 4:712–720

    Article  PubMed  CAS  Google Scholar 

  • Liehr T, Claussen U, Starke H (2004) Small supernumerary marker chromosomes (sSMC) in humans. Cytogenet Genome Res 107:55–67

    Article  PubMed  CAS  Google Scholar 

  • Lisi EC, Hamosh A, Doheny KF et al (2008) 3q29 interstitial microduplication: a new syndrome in a three-generation family. Am J Med Genet A 146A:601–609

    Article  PubMed  Google Scholar 

  • Locke DP, Sharp AJ, McCarroll SA et al (2006) Linkage disequilibrium and heritability of copy-number polymorphisms within duplicated regions of the human genome. Am J Hum Genet 79:275–290

    Article  PubMed  CAS  Google Scholar 

  • Lu XY, Phung MT, Shaw CA et al (2008) Genomic imbalances in neonates with birth defects: high detection rates by using chromosomal microarray analysis. Pediatrics 122:1310–1318

    Article  PubMed  Google Scholar 

  • Lupski JR (1998) Genomic disorders: structural features of the genome can lead to DNA rearrangements and human disease traits. Trends Genet 14:417–422

    Article  PubMed  CAS  Google Scholar 

  • Lupski JR, Stankiewicz P (2005) Genomic disorders: molecular mechanisms for rearrangements and conveyed phenotypes. PLoS Genet 1:e49

    Article  PubMed  CAS  Google Scholar 

  • Lupski JR, Stankiewicz P (2006) Genomic disorders: the genomic basis of disease. Humana, Totowa

    Book  Google Scholar 

  • Lupski JR, de Oca-Luna RM, Slaugenhaupt S et al (1991) DNA duplication associated with Charcot-Marie-Tooth disease type 1A. Cell 66:219–232

    Article  PubMed  CAS  Google Scholar 

  • Marshall CR, Noor A, Vincent JB et al (2008) Structural variation of chromosomes in autism spectrum disorder. Am J Hum Genet 82:477–488

    Article  PubMed  CAS  Google Scholar 

  • Mefford HC, Sharp AJ, Baker C et al (2008) Recurrent rearrangements of chromosome 1q21.1 and variable pediatric phenotypes. N Engl J Med 359:1685–1699

    Article  PubMed  CAS  Google Scholar 

  • Menten B, Maas N, Thienpont B et al (2006) Emerging patterns of cryptic chromosomal imbalance in patients with idiopathic mental retardation and multiple congenital anomalies: a new series of 140 patients and review of published reports. J Med Genet 43:625–633

    Article  PubMed  CAS  Google Scholar 

  • Menten B, Buysse K, Zahir F et al (2007) Osteopoikilosis, short stature and mental retardation as key features of a new microdeletion syndrome on 12q14. J Med Genet 44:264–268

    Article  PubMed  CAS  Google Scholar 

  • Miller DT, Adam MP, Aradhya S et al (2010) Consensus statement: chromosomal microarray is a first-tier clinical diagnostic test for individuals with developmental disabilities or congenital anomalies. Am J Hum Genet 86:749–764

    Article  PubMed  CAS  Google Scholar 

  • Milunsky A (2004) Genetic disorders and the fetus: diagnosis, prevention and treatment. The John Hopkins University Press, Baltimore

    Google Scholar 

  • Moeschler JB, Shevell M (2006) Clinical genetic evaluation of the child with mental retardation or developmental delays. Pediatrics 117:2304–2316

    Article  PubMed  Google Scholar 

  • Morrow DM, Connelly C, Hieter P (1997) “Break copy” duplication: a model for chromosome fragment formation in Saccharomyces cerevisiae. Genetics 147:371–382

    PubMed  CAS  Google Scholar 

  • Nielsen J, Wohlert M (1991) Chromosome abnormalities found among 34, 910 newborn children: results from a 13-year incidence study in Arhus, Denmark. Hum Genet 87:81–83

    Article  PubMed  CAS  Google Scholar 

  • Nobile C, Toffolatti L, Rizzi F, Simionati B et al (2002) Analysis of 22 deletion breakpoints in dystrophin intron 49. Hum Genet 110:418–421

    Article  PubMed  CAS  Google Scholar 

  • Pentao L, Wise CA, Chinault AC et al (1992) Charcot-Marie-Tooth type 1A duplication appears to arise from recombination at repeat sequences flanking the 1.5 Mb monomer unit. Nat Genet 2:292–300

    Article  PubMed  CAS  Google Scholar 

  • Pinkel D, Segraves R, Sudar D et al (1998) High resolution analysis of DNA copy number variation using comparative genomic hybridization to microarrays. Nat Genet 20:207–211

    Article  PubMed  CAS  Google Scholar 

  • Portnoi MF, Lebas F, Gruchy N et al (2005) 22q11.2 duplication syndrome: two new familial cases with some overlapping features with DiGeorge/velocardiofacial syndromes. Am J Med Genet A 137:47–51

    PubMed  Google Scholar 

  • Potocki L, Bi W, Treadwell-Deering D et al (2007) Characterization of Potocki-Lupski syndrome (dup(17)(p11.2p11.2)) and delineation of a dosage-sensitive critical interval that can convey an autism phenotype. Am J Hum Genet 80:633–649

    Article  PubMed  CAS  Google Scholar 

  • Rauch A, Ruschendorf F, Huang J et al (2004) Molecular karyotyping using an SNP array for genomewide genotyping. J Med Genet 41:916–922

    Article  PubMed  CAS  Google Scholar 

  • Redon R, Ishikawa S, Fitch KR et al (2006) Global variation in copy number in the human genome. Nature 444:444–454

    Article  PubMed  CAS  Google Scholar 

  • Rosenberg C, Knijnenburg J, Bakker E et al (2006) Array-CGH detection of micro rearrangements in mentally retarded individuals: clinical significance of imbalances present both in affected children and normal parents. J Med Genet 43:180–186

    Article  PubMed  CAS  Google Scholar 

  • Sagoo GS, Butterworth AS, Sanderson S et al (2009) Array CGH in patients with learning disability (mental retardation) and congenital anomalies: updated systematic review and meta-analysis of 19 studies and 13, 926 subjects. Genet Med 11:139–146

    Article  PubMed  CAS  Google Scholar 

  • Schena M, Shalon D, Davis RW et al (1995) Quantitative monitoring of gene expression patterns with a complementary DNA microarray. Science 270:467–470

    Article  PubMed  CAS  Google Scholar 

  • Schinzel A (2001) Catalogue of unbalanced chromosome aberrations in man. Walter de Gruyter, Berlin

    Google Scholar 

  • Schoumans J, Ruivenkamp C, Holmberg E et al (2005) Detection of chromosomal imbalances in children with idiopathic mental retardation by array based comparative genomic hybridisation (array-CGH). J Med Genet 42:699–705

    Article  PubMed  CAS  Google Scholar 

  • Sebat J, Lakshmi B, Troge J et al (2004) Large-scale copy number polymorphism in the human genome. Science 305:525–528

    Article  PubMed  CAS  Google Scholar 

  • Sebat J, Lakshmi B, Malhotra D et al (2007) Strong association of de novo copy number mutations with autism. Science 316:445–449

    Article  PubMed  CAS  Google Scholar 

  • Shaffer LG, Slovak ML, Campbell LJ (2009) ISCN 2009 an international system for human cytogenetic nomenclature. Karger, Basel

    Google Scholar 

  • Sharp AJ, Locke DP, McGrath SD et al (2005) Segmental duplications and copy-number variation in the human genome. Am J Hum Genet 77:78–88

    Article  PubMed  CAS  Google Scholar 

  • Sharp AJ, Hansen S, Selzer RR et al (2006) Discovery of previously unidentified genomic disorders from the duplication architecture of the human genome. Nat Genet 38:1038–1042

    Article  PubMed  CAS  Google Scholar 

  • Sharp AJ, Selzer RR, Veltman JA E et al (2007) Characterization of a recurrent 15q24 microdeletion syndrome. Hum Mol Genet 16:567–572

    Article  PubMed  CAS  Google Scholar 

  • Sharp AJ, Mefford HC, Li K et al (2008) A recurrent 15q13.3 microdeletion syndrome associated with mental retardation and seizures. Nat Genet 40:322–328

    Article  PubMed  CAS  Google Scholar 

  • Shaw CJ, Lupski JR (2005) Non-recurrent 17p11.2 deletions are generated by homologous and non-homologous mechanisms. Hum Genet 116:1–7

    Article  PubMed  CAS  Google Scholar 

  • Shaw-Smith C, Redon R, Rickman L et al (2004) Microarray based comparative genomic hybridisation (array-CGH) detects submicroscopic chromosomal deletions and duplications in patients with learning disability/mental retardation and dysmorphic features. J Med Genet 41:241–248

    Article  PubMed  CAS  Google Scholar 

  • Shaw-Smith C, Pittman AM, Willatt L et al (2006) Microdeletion encompassing MAPT at chromosome 17q21.3 is associated with developmental delay and learning disability. Nat Genet 38:1032–1037

    Article  PubMed  CAS  Google Scholar 

  • Shendure J, Ji H (2008) Next-generation DNA sequencing. Nat Biotechnol 26:1135–1145

    Article  PubMed  CAS  Google Scholar 

  • Shendure J, Porreca GJ, Reppas NB et al (2005) Accurate multiplex polony sequencing of an evolved bacterial genome. Science 309:1728–1732

    Article  PubMed  CAS  Google Scholar 

  • Solinas-Toldo S, Lampel S, Stilgenbauer S et al (1997) Matrix-based comparative genomic hybridization: biochips to screen for genomic imbalances. Genes Chromosom Cancer 20:399–407

    Article  PubMed  CAS  Google Scholar 

  • Somerville MJ, Mervis CB, Young EJ et al (2005) Severe expressive-language delay related to duplication of the Williams-Beuren locus. N Engl J Med 353:1694–1701

    Article  PubMed  CAS  Google Scholar 

  • Speicher MR, Gwyn Ballard S, Ward DC (1996) Karyotyping human chromosomes by combinatorial multi-fluor FISH. Nat Genet 12:368–375

    Article  PubMed  CAS  Google Scholar 

  • Stankiewicz P, Lupski JR (2002) Genome architecture, rearrangements and genomic disorders. Trends Genet 18:74–82

    Article  PubMed  CAS  Google Scholar 

  • Stankiewicz P, Shaw CJ, Dapper JD et al (2003) Genome architecture catalyzes nonrecurrent chromosomal rearrangements. Am J Hum Genet 72:1101–1116

    Article  PubMed  CAS  Google Scholar 

  • Stefansson H, Rujescu D, Cichon S et al (2008) Large recurrent microdeletions associated with schizophrenia. Nature 455:232–236

    Article  PubMed  CAS  Google Scholar 

  • Thienpont B, Mertens L, de Ravel T et al (2007) Submicroscopic chromosomal imbalances detected by array-CGH are a frequent cause of congenital heart defects in selected patients. Eur Heart J 28:2778–2784

    Article  PubMed  CAS  Google Scholar 

  • Tjio H, Levan A (1956) The chromosome numbers of man. Hereditas 42:1–6

    Article  Google Scholar 

  • Toffolatti L, Cardazzo B, Nobile C et al (2002) Investigating the mechanism of chromosomal deletion: characterization of 39 deletion breakpoints in introns 47 and 48 of the human dystrophin gene. Genomics 80:523–530

    Article  PubMed  CAS  Google Scholar 

  • Uhrig S, Schlembach D, Waldispuehl-Geigl J et al (2007) Impact of array comparative genomic hybridization-derived information on genetic counseling demonstrated by prenatal diagnosis of the TAR (thrombocytopenia-absent-radius) syndrome-associated microdeletion 1q21.1. Am J Hum Genet 81:866–868

    Article  PubMed  CAS  Google Scholar 

  • Ullmann R, Turner G, Kirchhoff M et al (2007) Array CGH identifies reciprocal 16p13.1 duplications and deletions that predispose to autism and/or mental retardation. Hum Mutat 28:674–682

    Article  PubMed  CAS  Google Scholar 

  • Van Buggenhout GJ, van Ravenswaaij-Arts C, Mieloo H et al (2001) Dysmorphology and mental retardation: molecular cytogenetic studies in dysmorphic mentally retarded patients. Ann Génét 44:89–92

    Article  PubMed  CAS  Google Scholar 

  • Van Esch H, Bauters M, Ignatius J et al (2005) Duplication of the MECP2 region is a frequent cause of severe mental retardation and progressive neurological symptoms in males. Am J Hum Genet 77:442–453

    Article  PubMed  CAS  Google Scholar 

  • van Karnebeek CD, Jansweijer MC, Leenders AG et al (2005) Diagnostic investigations in individuals with mental retardation: a systematic literature review of their usefulness. Eur J Hum Genet 13:6–25

    Article  PubMed  Google Scholar 

  • van Ommen GJ (2005) Frequency of new copy number variation in humans. Nat Genet 37:333–334

    Article  PubMed  CAS  Google Scholar 

  • Van Prooijen-Knegt AC, Van Hoek JFM, Bauman JGJ et al (1982) In situ hybridization of DNA sequences in human metaphase chromosomes visualized by an indirect fluorescent immunocytochemical procedure. Exp Cell Res 141:397–407

    Article  PubMed  CAS  Google Scholar 

  • Vanneste E, Voet T, Le Caignec C et al (2009) Chromosome instability is common in human cleavage-stage embryos. Nat Med 15:577–583

    Article  PubMed  CAS  Google Scholar 

  • Velagaleti GV, Bien-Willner GA, Northup JK et al (2005) Position effects due to chromosome breakpoints that map approximately 900 Kb upstream and approximately 1.3 Mb downstream of SOX9 in two patients with campomelic dysplasia. Am J Hum Genet 76:652–662

    Article  PubMed  CAS  Google Scholar 

  • Vermeesch JR, Rauch A (2006) Reply to Hochstenbach et al. “Molecular karyotyping”. Eur J Hum Genet 14:1063–1064

    Article  PubMed  Google Scholar 

  • Vermeesch JR, Fiegler H, de Leeuw N et al (2007) Guidelines for molecular karyotyping in constitutional genetic diagnosis. Eur J Hum Genet 15:1105–1114

    Article  PubMed  CAS  Google Scholar 

  • Vissers LE, de Vries BB, Osoegawa K et al (2003) Array-based comparative genomic hybridization for the genomewide detection of submicroscopic chromosomal abnormalities. Am J Hum Genet 73:1261–1270

    Article  PubMed  CAS  Google Scholar 

  • Vissers LE, Stankiewicz P, Yatsenko SA et al (2007) Complex chromosome 17p rearrangements associated with low-copy repeats in two patients with congenital anomalies. Hum Genet 121:697–709

    Article  PubMed  CAS  Google Scholar 

  • Voelkerding KV, Dames SA, Durtschi JD (2009) Next-generation sequencing: from basic research to diagnostics. Clin Chem 55:641–658

    Article  PubMed  CAS  Google Scholar 

  • Walsh T, McClellan JM, McCarthy SE et al (2008) Rare structural variants disrupt multiple genes in neurodevelopmental pathways in schizophrenia. Science 320:539–543

    Article  PubMed  CAS  Google Scholar 

  • Warburton D (1991) De novo balanced chromosome rearrangements and extra marker chromosomes identified at prenatal diagnosis: clinical significance and distribution of breakpoints. Am J Hum Genet 49:995–1013

    PubMed  CAS  Google Scholar 

  • Weterings E, Van Gent DC (2004) The mechanism of non-homologous end-joining: a synopsis of synapsis. DNA Repair (Amst) 3:1425–1435

    Article  CAS  Google Scholar 

  • Willatt L, Cox J, Barber J et al (2005) 3q29 microdeletion syndrome: clinical and molecular characterization of a new syndrome. Am J Hum Genet 77:154–160

    Article  PubMed  CAS  Google Scholar 

  • Wong KK, deLeeuw RJ, Dosanjh NS et al (2007) A comprehensive analysis of common copy-number variations in the human genome. Am J Hum Genet 80:91–104

    Article  PubMed  CAS  Google Scholar 

  • Xu B, Roos JL, Levy S et al (2008) Strong association of de novo copy number mutations with sporadic schizophrenia. Nat Genet 40:880–885

    Article  PubMed  CAS  Google Scholar 

  • Yobb TM, Somerville MJ, Willatt L et al (2005) Microduplication and triplication of 22q11.2: a highly variable syndrome. Am J Hum Genet 76:865–876

    Article  PubMed  CAS  Google Scholar 

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Correspondence to Joris Robert Vermeesch .

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Vermeesch, J., Buysse, K. (2012). Cytogenetic Testing and Chromosomal Disorders. In: Elzouki, A.Y., Harfi, H.A., Nazer, H.M., Stapleton, F.B., Oh, W., Whitley, R.J. (eds) Textbook of Clinical Pediatrics. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-642-02202-9_4

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