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The Family Syntrophomonadaceae

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The Prokaryotes

Abstract

The family Syntrophomonadaceae comprises the genera Syntrophomonas, Pelospora, Syntrophothermus, and Thermosyntropha. All these bacteria are strictly anaerobic and depend on reducing conditions for growth. They are Gram-positive with low DNA content, but in most cases the murein layer is thin and an outer membrane appears, resembling the cell wall architecture of Gram-negative bacteria. Also in Gram-staining, these bacteria mostly behave Gram-negative. Except for Pelospora, all members of this family degrade fatty acids of four carbon atoms or more by beta oxidation, in close association with hydrogen- or formate-utilizing partner organisms, and depend on this association for thermodynamic reasons. Most representatives of this family can be grown in pure culture with crotonate which is dismutated to acetate and butyrate. Pelospora sp. grows by decarboxylation of glutarate or succinate.

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References

  • Beaty PS, McInerney MJ (1987) Growth of Syntrophomonas wolfei in pure culture on crotonate. Arch Microbiol 147:389–393

    Article  CAS  Google Scholar 

  • Beaty PS, McInerney MJ (1990) Nutritional features of Syntrophomonas wolfei Appl. Environ Microbiol 50:3223–3224

    Google Scholar 

  • Boone DR (1995) Short-and long-term maintenance of methanogen stock cultures. In: Sowers KR, Schreier HJ (eds) Archaea: Methanogens: a laboratory manual. Cold Spring Harbor Laboratory Press, New York, pp 79–83

    Google Scholar 

  • Boone DR, Bryant MP (1980) Propionate-degrading bacterium, Syntrophobacter wolinii sp. nov. gen. nov., from methanogenic ecosystems. Appl Environ Microbiol 40:626–632

    PubMed  CAS  PubMed Central  Google Scholar 

  • Buchanan RE, Gibbons NE (eds) (1974) Bergey’s manual of determinative bacteriology. Williams and Wilkins, Baltimore

    Google Scholar 

  • Djao ODN et al (2010) Complete genome sequence of Syntrophothermus lipocalidus type strain (TGB-C1(T)). Stand Genomic Sci 3:267–275

    Article  Google Scholar 

  • Gibbons NE, Murray RGE (1978) Proposals concerning the higher taxa of bacteria. Int J Syst Bacteriol 28:1–6

    Article  Google Scholar 

  • Hatamoto M, Imachi H, Fukayo S, Ohashi A, Harada H (2007) Syntrophomonas palmitatica sp nov., an anaerobic, syntrophic, long-chain fatty-acid-oxidizing bacterium isolated from methanogenic sludge. Int J Syst Evol Microbiol 57:2137–2142

    Article  PubMed  CAS  Google Scholar 

  • Hippe H (1984) Maintenance of methanogenic bacteria. In: Kirsop BE, Snell JJS (eds) Maintenance of microorganisms. Academic Press, London, pp 69–81

    Google Scholar 

  • Hungate RE (1969) A roll tube method for cultivation of strict anaerobes. In: Norris R, Ribbons DW (eds) Methods in microbiology. Academic Press, New York, pp 117–132

    Google Scholar 

  • Liu Y, Balkwill DL, Aldrich HC, Drake GR, Boone DR (1999) Characterization of the anaerobic propionate-degrading syntrophs Smithella propionica gen. nov., sp. nov. and Syntrophobacter wolinii. Int J Syst Bacteriol 49:545–556

    Article  PubMed  CAS  Google Scholar 

  • Lorowitz WH, Zhao H, Bryant MP (1989) Syntrophomonas wolfei subsp. saponavida subsp. nov., a long-chain fatty-acid-degrading, anaerobic, syntrophic bacterium; Syntrophomonas wolfei subsp. wolfei subsp. nov.; and emended descriptions of the genus and species. Int J Syst Bacteriol 39:122–126

    Article  CAS  Google Scholar 

  • Matthies C, Springer N, Ludwig W, Schink B (2000) Pelospora glutarica gen. nov., sp. nov., a glutarate-fermenting, strictly anaerobic, spore-forming bacterium. Int J Syst Evol Microbiol 50:645–648

    Article  PubMed  Google Scholar 

  • McInerney MJ (1986) Transient and persistent associations among prokaryotes. In: Poindexter JS, Leadbetter ER (eds) Bacteria in nature. Plenum Press, New York, pp 293–338

    Google Scholar 

  • McInerney MJ, Wofford NQ (1992) Enzymes involved in crotonate metabolism in Syntrophomonas wolfei. Arch Microbiol 158:344–349

    Article  CAS  Google Scholar 

  • McInerney MJ, Bryant MP, Pfennig N (1979) Anaerobic bacterium that degrades fatty acids in syntrophic association with methanogens. Arch Microbiol 122:129–135

    Article  CAS  Google Scholar 

  • McInerney MJ, Bryant MP, Hespell RB, Costerton JW (1981) Syntrophomonas wolfei gen. nov. sp. nov., an anaerobic, syntrophic, fatty acid-oxidizing bacterium. Appl Environ Microbiol 41:1029–1039

    PubMed  CAS  PubMed Central  Google Scholar 

  • Müller N, Schleheck D, Schink B (2009) Involvement of NADH: acceptor oxidoreductase and butyryl-CoA dehydrogenase in reversed electron transport during syntrophic butyrate oxidation by Syntrophomonas wolfei. J Bacteriol 191:6167–6177

    Article  PubMed  PubMed Central  Google Scholar 

  • Müller N, Worm P, Schink B, Stams AJM, Plugge CM (2010) Syntrophic butyrate and propionate oxidation: from genomes to reaction mechanisms. Environ Microbiol Rep 2:489–499

    Article  PubMed  Google Scholar 

  • Roy F, Samain E, Dubourguier HC, Albagnac G (1986) Syntrophomonas sapovorans sp. nov., a new obligately proton reducing anaerobe oxidizing saturated and unsaturated long chain fatty acids. Arch Microbiol 145:142–147

    Article  CAS  Google Scholar 

  • Schink B (1997) Energetics of syntrophic cooperation in methanogenic degradation. Microbiol Mol Biol Rev 61:262–280

    PubMed  CAS  PubMed Central  Google Scholar 

  • Schmidt A, Müller N, Schink B, Schleheck D (2013) A proteomic view at the biochemistry of syntrophic butyrate oxidation in Syntrophomonas wolfei. Plos One http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0056905

  • Sekiguchi Y, Kamagata Y, Nakamura K, Ohashi A, Harada H (2000) Syntrophothermus lipocalidus gen. nov., sp. nov., a novel thermophilic, syntrophic, fatty-acid-oxidizing anaerobe which utilizes isobutyrate. Int J Syst Evol Microbiol 50:771–779

    Article  PubMed  CAS  Google Scholar 

  • Sieber JR et al (2010) The genome of Syntrophomonas wolfei: new insights into syntrophic metabolism and biohydrogen production. Environ Microbiol 12:2289–2301

    PubMed  CAS  Google Scholar 

  • Sousa DZ, Smidt H, Alves MM, Stams AJM (2007) Syntrophomonas zehnderi sp nov., an anaerobe that degrades long-chain fatty acids in co-culture with Methanobacterium formicicum. Int J Syst Evol Microbiol 57:609–615

    Article  PubMed  CAS  Google Scholar 

  • Sowers KR, Noll KM (1995) Techniques for anaerobic growth. In: Robb FT, Sowers KR, Schreier HJ, DasSarma S, Fleischmann EM (eds) Archaea: a laboratory manual. Cold Spring Harbor Laboratory Press, New York, pp 15–47

    Google Scholar 

  • Stamatakis A (2006) RAxML-VI-HPC: Maximum likelihood-based phylogenetic anlyses with thousands of taxa and mixed models. Bioinformatics 22(21):2688–2690

    Article  PubMed  CAS  Google Scholar 

  • Stieb M, Schink B (1985) Anaerobic oxidation of fatty acids by Clostridium bryantii sp. nov., a sporeforming, obligately syntrophic bacterium. Arch Microbiol 140:387–390

    Article  CAS  Google Scholar 

  • Svetlitshnyi V, Rainey F, Wiegel J (1996) Thermosyntropha lipolytica gen. nov., sp. nov., a lipolytic, anaerobic, alkalitolerant, thermophilic bacterium utilizing short-and long-chain fatty acids in syntrophic coculture with a methanogenic archaeum. Int J Syst Bacteriol 46:1131–1137

    Article  PubMed  CAS  Google Scholar 

  • Thauer RK, Morris JG (1984) Metabolism of chemotrophic anaerobes: old views and new aspects. Symp Soc Gen Microbiol 36:123–374

    Google Scholar 

  • Thauer RK, Jungermann K, Decker K (1977) Energy conservation in chemotrophic anaerobic bacteria. Bacteriol Rev 41:100–180

    PubMed  CAS  PubMed Central  Google Scholar 

  • Tschech A, Schink B (1985a) Fermentative degradation of resorcinol and resorcylic acids. Arch Microbiol 143:52–59

    Article  CAS  Google Scholar 

  • Tschech A, Schink B (1985b) Fermentative metabolism of monohydroxybenzoates by defined syntrophic cocultures. Arch Microbiol 145:396–402

    Article  Google Scholar 

  • Wallrabenstein C, Schink B (1994) Evidence of reversed electron transport in syntrophic butyrate or benzoate oxidation by Syntrophomonas wolfei and Syntrophus buswellii. Arch Microbiol 162:136–142

    Article  CAS  Google Scholar 

  • Wofford NQ, Beaty PS, McInerney MJ (1986) Preparation of cell-free extracts and the enzymes involved in fatty acid metabolism in Syntrophomonas wolfei. J Bacteriol 167:179–185

    PubMed  CAS  PubMed Central  Google Scholar 

  • Wu CG, Liu XL, Dong XZ (2006a) Syntrophomonas erecta subsp sporosyntropha subsp nov., a spore-forming bacterium that degrades short chain fatty acids in co-culture with methanogens. Syst Appl Microbiol 29:457–462

    Article  PubMed  CAS  Google Scholar 

  • Wu CG, Liu XL, Dong XZ (2006b) Syntrophomonas cellicola sp nov., a spore-forming syntrophic bacterium isolated from a distilled-spirit-fermenting cellar, and assignment of Syntrophospora bryantii to Syntrophomonas bryantii comb. nov. Int J Syst Evol Microbiol 56:2331–2335

    Article  PubMed  CAS  Google Scholar 

  • Wu CG, Dong XZ, Liu XL (2007) Syntrophomonas wolfei subsp methylbutyratica subsp nov., and assignment of Syntrophomonas wolfei subsp saponavida to Syntrophomonas saponavida sp nov comb. nov. Syst Appl Microbiol 30:376–380

    Article  PubMed  Google Scholar 

  • Yarza P, Ludwig W, Euzeby J, Amann R, Schleifer KH, Glockner FO, Rossello-Mora R (2010) Update of the All-Species Living Tree Project based on 16S and 23S rRNA sequence analyses. Syst Appl Microbiol 33: 291–299

    Google Scholar 

  • Zhang CY, Liu XL, Dong XZ (2004) Syntrophomonas curvata sp nov., an anaerobe that degrades fatty acids in coculture with methanogens. Int J Syst Evol Microbiol 54:969–973

    Article  PubMed  CAS  Google Scholar 

  • Zhang CY, Liu XL, Dong XX (2005) Syntrophomonas erecta sp nov., a novel anaerobe that syntrophically degrades short-chain fatty acids. Int J Syst Evol Microbiol 55:799–803

    Article  PubMed  CAS  Google Scholar 

  • Zhang F, Liu XL, Dong XZ (2012) Thermosyntropha tengcongensis sp nov., a thermophilic bacterium that degrades long-chain fatty acids syntrophically. Int J Syst Evol Microbiol 62:759–763

    Article  PubMed  CAS  Google Scholar 

  • Zhao H, Yeng D, Woese CR, Bryant MP (1990) Assignment of Clostridium bryantii to Syntrophospora bryantii gen. nov. comb., based on 16S rRNA sequence analysis of its crotonate-grown pure culture. Int J Syst Bacteriol 40:40–44

    Article  PubMed  CAS  Google Scholar 

  • Zhao H, Yang D, Woese CR, Bryant MP (1993) Assignment of fatty acid-b-oxidizing syntrophic bacteria to Syntrophomonadaceae fam. nov. on the basis of 16S rRNA sequence analyses. Int J Syst Bacteriol 43:278–286

    Article  PubMed  CAS  Google Scholar 

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Acknowledgment

This manuscript is largely based on its predecessor that was written by Martin Sobieraj and David R. Boone and published in the last edition of the Prokaryotes. The author wants to dedicate this manuscript to the late David Boone who made substantial contributions to microbial taxonomy in general and to our understanding of syntrophic fatty acid oxidation in particular. Unfortunately, David passed away in 2005 far too early, at 53 years of age.

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Correspondence to Bernhard Schink .

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Schink, B., Muñoz, R. (2014). The Family Syntrophomonadaceae . In: Rosenberg, E., DeLong, E.F., Lory, S., Stackebrandt, E., Thompson, F. (eds) The Prokaryotes. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-642-30120-9_365

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