Skip to main content
SpringerLink
Log in

Femtosecond Stimulated Raman Spectroscopy

  • Reference work entry
Encyclopedia of Biophysics

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Log in via an institution
Chapter
USD 29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 999.99
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Hardcover Book
USD 1,099.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

References

  • Agmon N. The Grotthuss mechanism. Chem Phys Lett. 1995;244:456–62.

    CAS  Google Scholar 

  • Ai HW, Hazelwood KL, et al. Fluorescent protein FRET pairs for ratiometric imaging of dual biosensors. Nat Methods. 2008;5:401–3.

    CAS  PubMed  Google Scholar 

  • Andel F, Hasson KC, et al. Femtosecond time-resolved spectroscopy of the primary photochemistry of phytochrome. Biospectroscopy. 1997;3:421–33.

    CAS  Google Scholar 

  • Andresen M, Stiel AC, et al. Photoswitchable fluorescent proteins enable monochromatic multilabel imaging and dual color fluorescence nanoscopy. Nat Biotechnol. 2008;26:1035–40.

    CAS  PubMed  Google Scholar 

  • Belevich I, Gorbikova E, et al. Initiation of the proton pump of cytochrome c oxidase. Proc Natl Acad Sci USA. 2010;107:18469–74.

    CAS  PubMed  Google Scholar 

  • Beratan DN, Skourtis SS, et al. Steering electrons on moving pathways. Acc Chem Res. 2009;42:1669–78.

    CAS  PubMed Central  PubMed  Google Scholar 

  • Berg JM, Tymoczko JL, Stryer L. Biochemistry. 5th ed. New York: W. H Freeman; 2002.

    Google Scholar 

  • Bothma JP, Gilmore JB, et al. The role of quantum effects in proton transfer reactions in enzymes: quantum tunneling in a noisy environment? New J Phys. 2010;12.

    Google Scholar 

  • Castner EW, Maroncelli M. Solvent dynamics derived from optical Kerr effect, dielectric dispersion, and time-resolved Stokes shift measurements: an empirical comparison. J Mol Liq. 1998;77:1–36.

    CAS  Google Scholar 

  • Cerullo G, De Silvestri S. Ultrafast optical parametric amplifiers. Rev Sci Instrum. 2003;74:1–18.

    CAS  Google Scholar 

  • Chalfie M, Tu Y, et al. Green fluorescent protein as a marker for protein expression. Science. 1994;263:802–5.

    CAS  PubMed  Google Scholar 

  • Chattoraj M, King BA, et al. Ultra-fast excited state dynamics in green fluorescent protein: multiple states and proton transfer. Proc Natl Acad Sci USA. 1996;93:8362–7.

    CAS  PubMed  Google Scholar 

  • Cheng JX, Xie XS. Coherent anti-stokes Raman scattering microscopy: instrumentation, theory and applications. J Phys Chem B. 2004;108:827.

    CAS  Google Scholar 

  • Cleland WW. The low-barrier hydrogen bond in enzymic catalysis. Adv Phys Org Chem. 2010;44:1–17.

    CAS  Google Scholar 

  • Co DT, Lockard JV, et al. Narrow-bandwidth tunable picosecond pulses in the visible produced by noncollinear optical parametric amplification with a chirped blue pump. Appl Opt. 2010;49:1880–5.

    PubMed  Google Scholar 

  • Coe JD, Levine BG, et al. Ab initio molecular dynamics of excited-state intramolecular proton transfer using multireference perturbation theory. J Phys Chem A. 2007;111:11302–10.

    CAS  PubMed  Google Scholar 

  • Crim FF. Chemical reaction dynamics. Proc Natl Acad Sci USA. 2008;105:12647–8.

    CAS  PubMed  Google Scholar 

  • Dasgupta J, Frontiera RR, et al. Ultrafast excited-state isomerization in phytochrome revealed by femtosecond stimulated Raman spectroscopy. Proc Natl Acad Sci USA. 2009;106:1784–9.

    CAS  PubMed  Google Scholar 

  • Essen L-O, Mailliet J, et al. The structure of a complete phytochrome sensory module in the Pr ground state. Proc Natl Acad Sci USA. 2008;105:14709–14.

    CAS  PubMed  Google Scholar 

  • Fang C, Frontiera RR, et al. Mapping GFP structure evolution during proton transfer with femtosecond Raman spectroscopy. Nature. 2009;462:200–4.

    CAS  PubMed  Google Scholar 

  • Fayer MD. Dynamics of liquids, molecules, and proteins measured with ultrafast 2D IR vibrational echo chemical exchange spectroscopy. Annu Rev Phys Chem. 2009;60:21.

    CAS  PubMed  Google Scholar 

  • Freudiger CW, Min W, et al. Label-free biomedical imaging with high sensitivity by stimulated Raman scattering microscopy. Science. 2008;322:1857–61.

    CAS  PubMed Central  PubMed  Google Scholar 

  • Frontiera RR, Mathies RA. Femtosecond stimulated Raman spectroscopy. Laser Photon Rev. 2011;5(1):102–13.

    CAS  Google Scholar 

  • Frontiera RR, Shim S, et al. Origin of negative and dispersive features in anti-Stokes and resonance femtosecond stimulated Raman spectroscopy. J Chem Phys. 2008;129:064507.

    PubMed  Google Scholar 

  • Frontiera RR, Dasgupta J, et al. Probing interfacial electron transfer in Coumarin 343 sensitized TiO2 nanoparticles with femtosecond stimulated Raman. J Am Chem Soc. 2009;131:15630–2.

    CAS  PubMed  Google Scholar 

  • Gray HB, Winkler JR. Electron tunneling through proteins. Q Rev Biophys. 2003;36:341–72.

    CAS  PubMed  Google Scholar 

  • Hagfeldt A, Gratzel M. Molecular photovoltaics. Acc Chem Res. 2000;33:269–77.

    CAS  PubMed  Google Scholar 

  • Hampp N. Bacteriorhodopsin as a photochromic retinal protein for optical memories. Chem Rev. 2000;100:1755–76.

    CAS  PubMed  Google Scholar 

  • Henderson JN, et al. Structural basis for reversible photobleaching of a green fluorescent protein homologue. Proc Natl Acad Sci USA. 2007;104:6672–7.

    CAS  PubMed  Google Scholar 

  • Jortner J. Temperature dependent activation energy for electron transfer between biological molecules. J Chem Phys. 1976;64:4860–4.

    CAS  Google Scholar 

  • Kandori H, et al. Primary process of phytochrome – initial step of photomorphogenesis in green plants. J Am Chem Soc. 1992;114:10958–9.

    CAS  Google Scholar 

  • Kennis JTM, et al. Uncovering the hidden ground state of green fluorescent protein. Proc Natl Acad Sci USA. 2004;101:17988–93.

    CAS  PubMed  Google Scholar 

  • Kukura P, McCamant DW, Yoon S, Wandschneider DB, Mathies RA. Structural observation of the primary isomerization in vision with femtosecond stimulated Raman. Science. 2005;310:1006–9.

    CAS  PubMed  Google Scholar 

  • Kukura P, McCamant DW, Mathies RA. Femtosecond stimulated Raman spectroscopy. Annu Rev Phys Chem. 2007;58:461–88.

    CAS  PubMed  Google Scholar 

  • Laimgruber S, Schachenmayr H, et al. A femtosecond stimulated Raman spectrograph for the near ultraviolet. Appl Phys B. 2006;85:557–64.

    CAS  Google Scholar 

  • Lee SY, Heller EJ. Time-dependent theory of Raman scattering. J Chem Phys. 1979;71:4777–88.

    CAS  Google Scholar 

  • Lee SY, Zhang DH, et al. Theory of femtosecond stimulated Raman spectroscopy. J Chem Phys. 2004;121:3632–42.

    CAS  PubMed Central  PubMed  Google Scholar 

  • Lee HJ, Svahn E, et al. Intricate role of water in proton transport through cytochrome c oxidase. J Am Chem Soc. 2010;132:16225–39.

    CAS  PubMed Central  PubMed  Google Scholar 

  • Levine BG, Martinez TJ. Isomerization through conical intersections. Annu Rev Phys Chem. 2007;58:613.

    CAS  PubMed  Google Scholar 

  • Litvinenko KL, Meech SR. Observation of low frequency vibrational modes in a mutant of green fluorescent protein. Phys Chem Chem Phys. 2004;6:2012.

    CAS  Google Scholar 

  • Lockard JV, Ricks AB, et al. Interrogating the intramolecular charge-transfer state of a julolidine-anthracene donor-acceptor molecule with femtosecond stimulated Raman spectroscopy. J Phys Chem Lett. 2010;1:215–8.

    CAS  Google Scholar 

  • Lombardi JR, Birke RL. A unified view of surface-enhanced Raman scattering. Acc Chem Res. 2009;42:734–42.

    CAS  PubMed  Google Scholar 

  • Long DA. The Raman effect: a unified treatment of the theory of Raman scattering by molecules. Amsterdam: Wiley; 2001.

    Google Scholar 

  • Lossau HA, Kummer A, et al. Time-resolved spectroscopy of wild-type and mutant green fluorescent proteins reveals excited state deprotonation consistent with fluorophore-protein interactions. Chem Phys. 1996;213:1–16.

    CAS  Google Scholar 

  • Magnuson A, Anderlund M, et al. Biomimetic and microbial approaches to solar fuel generation. Acc Chem Res. 2009;42:1899–909.

    CAS  PubMed  Google Scholar 

  • Marcus RA, Sutin N. Electron transfers in chemistry and biology. Biochim Biophys Acta. 1985;811:265–322.

    CAS  Google Scholar 

  • Mathies RA, Cruz CHB, et al. Direct observation of the femtosecond excited-state cis-trans isomerization in bacteriorhodopsin. Science. 1988;240:777–9.

    CAS  PubMed  Google Scholar 

  • McCamant DW, Kukura P, et al. Femtosecond broadband stimulated Raman: a new approach for high-performance vibrational spectroscopy. Appl Spectrosc. 2003;57:1317–23.

    CAS  PubMed Central  PubMed  Google Scholar 

  • McCamant DW, Kukura P, et al. Femtosecond broadband stimulated Raman spectroscopy: apparatus and methods. Rev Sci Instrum. 2004;75:4971–80.

    CAS  PubMed Central  PubMed  Google Scholar 

  • McCamant DW, Kukura P, et al. Femtosecond stimulated Raman study of excited-state evolution in bacteriorhodopsin. J Phys Chem B. 2005;109:10449–57.

    CAS  PubMed Central  PubMed  Google Scholar 

  • McCusker JK. Femtosecond absorption spectroscopy of transition metal charge-transfer complexes. Acc Chem Res. 2003;36:876–87.

    CAS  PubMed  Google Scholar 

  • Mohammed OF, Pines D, et al. Sequential proton transfer through water bridges in acid-base reactions. Science. 2005;310:83–6.

    CAS  PubMed  Google Scholar 

  • Myers AB, Mathies RA. In: Spiro TG, editor. Biological applications of Raman spectroscopy, vol. 2. New York: Wiley; 1987.

    Google Scholar 

  • O’Regan B, Gratzel M. A low-cost, high-efficiency solar cell based on dye-sensitized colloidal TiO2 films. Nature. 1991;353:737–40.

    Google Scholar 

  • Ormo M, Cubitt AB, et al. Crystal structure of the Aequorea victoria green fluorescent protein. Science. 1996;273:1392–5.

    CAS  PubMed  Google Scholar 

  • Ploetz E, Laimgruber S, et al. Femtosecond stimulated Raman microscopy. Appl Phys B. 2007;87:389–93.

    CAS  Google Scholar 

  • Pollard WT, Mathies RA. Analysis of femtosecond dynamic absorption-spectra of nonstationary states. Annu Rev Phys Chem. 1992;43:497–523.

    CAS  PubMed  Google Scholar 

  • Polli D, Luer L, et al. High-time-resolution pump-probe system with broadband detection for the study of time-domain vibrational dynamics. Rev Sci Instrum. 2007;78:103108.

    PubMed  Google Scholar 

  • Reece SY, Nocera DG. Proton-coupled electron transfer in biology: results from synergistic studies in natural and model systems. Annu Rev Biochem. 2009;78:673–99.

    CAS  PubMed  Google Scholar 

  • Remington SJ. Fluorescent proteins: maturation, photochemistry and photophysics. Curr Opin Struct Biol. 2006;16:714–21.

    CAS  PubMed  Google Scholar 

  • Renger T, Schlodder E. Primary photophysical processes in photosystem II: bridging the gap between crystal structure and optical spectra. Chemphyschem. 2010;11:1141–53.

    CAS  PubMed  Google Scholar 

  • Rockwell NC, Su YS, et al. Phytochrome structure and signaling mechanisms. Annu Rev Plant Biol. 2006;57:837–58.

    CAS  PubMed Central  PubMed  Google Scholar 

  • Rudiger W. Events in the phytochrome molecule after irradiation. Photochem Photobiol. 1992;56:803–9.

    CAS  PubMed  Google Scholar 

  • Rudiger W, Thummler F. Phytochrome, the visual pigments in plants. Angew Chem Int Ed Engl. 1991;30:1216–28.

    Google Scholar 

  • Saar BG, Zeng YN, et al. Label-free, real-time monitoring of biomass processing with stimulated Raman scattering microscopy. Angew Chem Int Ed Engl. 2009;49:5476–9.

    Google Scholar 

  • Schoenlein RW, Peteanu LA, et al. The first step in vision-femtosecond isomerization of rhodopsin. Science. 1991;254:412–5.

    CAS  PubMed  Google Scholar 

  • Shaner NC, Lin MZ, et al. Improving the photostability of bright monomeric orange and red fluorescent proteins. Nat Methods. 2008;5:545–51.

    CAS  PubMed Central  PubMed  Google Scholar 

  • Shim S, Mathies RA. Generation of narrow-bandwidth picosecond visible pulses from broadband femtosecond pulses for femtosecond stimulated Raman. Appl Phys Lett. 2006;89:121124.

    Google Scholar 

  • Shim S, Mathies RA. Development of a tunable femtosecond stimulated Raman apparatus and its application to beta-carotene. J Phys Chem B. 2008;112:4826–32.

    CAS  PubMed  Google Scholar 

  • Shim S, Stuart CM, et al. Resonance Raman cross-sections and vibronic analysis of rhodamine 6 G from broadband stimulated Raman spectroscopy. Chemphyschem. 2008;9:697–9.

    CAS  PubMed  Google Scholar 

  • Shim S, Dasgupta J, et al. Femtosecond time-resolved stimulated Raman reveals the birth of bacteriorhodopsin’s J and K intermediates. J Am Chem Soc. 2009;131:7592–7.

    CAS  PubMed  Google Scholar 

  • Shimomura O, Johnson FH, et al. Extraction, purification and properties of aequorin, a bioluminescent protein from luminous hydromedusan, Aequorea. J Cell Comp Physiol. 1962;59:223.

    CAS  PubMed  Google Scholar 

  • Sineshchekov VA, Akhobadze VV. Phytochrome states in etiolated pea-seedlings – fluorescence and primary photoreactions at low-temperatures. Photochem Photobiol. 1992;56:743–9.

    CAS  Google Scholar 

  • Spillane KM, Dasgupta J, et al. Homogeneity of phytochrome Cph1 vibronic absorption revealed by resonance Raman intensity analysis. J Am Chem Soc. 2009;131:13946–8.

    CAS  PubMed Central  PubMed  Google Scholar 

  • Steinmeyer G, Sutter DH, et al. Frontiers in ultrashort pulse generation: pushing the limits in linear and nonlinear optics. Science. 1999;286:1507–12.

    CAS  PubMed  Google Scholar 

  • Stoner-Ma D, Melief EH, et al. Proton relay reaction in green fluorescent protein (GFP): polarization-resolved ultrafast vibrational spectroscopy of isotopically edited GFP. J Phys Chem B. 2006;110:22009–18.

    CAS  PubMed  Google Scholar 

  • Sun Z, Qiu XQ, et al. Three-state model for femtosecond broadband stimulated Raman scattering. J Raman Spectrosc. 2008;39:1568–77.

    CAS  Google Scholar 

  • Teuchner K, Schulz M, et al. Excited state behavior of phytochrome Pr. Photochem Photobiol. 1995;62:1076–80.

    CAS  Google Scholar 

  • Tsien RY. The green fluorescent protein. Annu Rev Biochem. 1998;67:509–44.

    CAS  PubMed  Google Scholar 

  • Usman A, Mohammed OF, et al. Excited-state structure determination of the green fluorescent protein chromophore. J Am Chem Soc. 2005;127:11214–5.

    CAS  PubMed  Google Scholar 

  • Vengris M, van Stokkum IHM, et al. Ultrafast excited and ground-state dynamics of the green fluorescent protein chromophore in solution. J Phys Chem A. 2004;108:4587–98.

    CAS  Google Scholar 

  • Wagner JR, Brunzelle JS, et al. A light-sensing knot revealed by the structure of the chromophore-binding domain of phytochrome. Nature. 2005;438:325–31.

    CAS  PubMed  Google Scholar 

  • Wang Q, Schoenlein RW, et al. Vibrationally coherent photochemistry in the femtosecond primary event of vision. Science. 1994;266:422–4.

    CAS  PubMed  Google Scholar 

  • Weigel A, Ernsting NP. Excited stilbene: intramolecular vibrational redistribution and solvation studied by femtosecond stimulated Raman spectroscopy. J Phys Chem B. 2010;114:7879–93.

    CAS  PubMed  Google Scholar 

  • Wilson KC, Lyons B, et al. Two-dimensional femtosecond stimulated Raman spectroscopy: observation of cascading Raman signals in acetonitrile. J Chem Phys. 2009;131:214502.

    PubMed  Google Scholar 

  • Yoon S, McCamant DW, et al. Dependence of line shapes in femtosecond broadband stimulated Raman spectroscopy on pump-probe time delay. J Chem Phys. 2005;122:024505.

    PubMed Central  PubMed  Google Scholar 

  • Yoshihara K, Nagasawa Y, et al. Femtosecond intermolecular electron-transfer in condensed systems. J Photochem Photobiol A Chem. 1994;80:169–75.

    CAS  Google Scholar 

  • Yoshizawa M, Kurosawa M. Femtosecond time-resolved Raman spectroscopy using stimulated Raman scattering. Phys Rev A. 2000;61:013808.

    Google Scholar 

  • Zewail AH. Femtochemistry: atomic-scale dynamics of the chemical bond. J Phys Chem A. 2000;104:5660–94.

    CAS  Google Scholar 

  • Zhu LY, Sage JT, et al. Science. 1994;266:629.

    CAS  PubMed  Google Scholar 

Download references

Author information

Authors and Affiliations

  1. Department of Chemical Sciences, Tata Institute of Fundamental Research, NMR 105, 400005, Mumbai, Maharashtra, India

    Jyotishman Dasgupta

  2. Department of Chemistry, Northwestern University, Evanston, IL, USA

    Renee R. Frontiera

  3. Department of Chemistry, Oregon State University, Corvallis, OR, USA

    Chong Fang

  4. Department of Chemistry, University of California, Berkeley, CA, USA

    Richard A. Mathies

Authors
  1. Jyotishman Dasgupta
    View author publications

    You can also search for this author in PubMed Google Scholar

  2. Renee R. Frontiera
    View author publications

    You can also search for this author in PubMed Google Scholar

  3. Chong Fang
    View author publications

    You can also search for this author in PubMed Google Scholar

  4. Richard A. Mathies
    View author publications

    You can also search for this author in PubMed Google Scholar

Corresponding author

Correspondence to Jyotishman Dasgupta .

Editor information

Editors and Affiliations

  1. Department of Biochemistry, University of Leicester, Leicester, UK

    Gordon C. K. Roberts

Rights and permissions

Reprints and permissions

Copyright information

© 2013 European Biophysical Societies' Association (EBSA)

About this entry

Cite this entry

Dasgupta, J., Frontiera, R.R., Fang, C., Mathies, R.A. (2013). Femtosecond Stimulated Raman Spectroscopy. In: Roberts, G.C.K. (eds) Encyclopedia of Biophysics. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-642-16712-6_134

Download citation

Publish with us

Policies and ethics

Search

Navigation