Skip to main content

Molecular Methods for the Detection of Methanotrophs

  • Protocol
Bioremediation Protocols

Part of the book series: Methods in Biotechnology™ ((MIBT,volume 2))

Abstract

Methane-oxidizmg bacteria (methanotrophs) are a unique group of bacteria that grow on methane as then sole source of carbon and energy. They can be isolated from a wide variety of marme and freshwater environments, soils, and sediments and appear to be ubiquitous in the natural environment. They have been classtfred, on the basis of chemotaxonomic studies and 16s rrbosomal RNA phylogenetic analyses, mto five genera: Methylococcus, Methylobacter, Methylomonas, Methylosmus, and Methylocystis (1,2). These five genera fall into two phylogenetically distinct, exclusively methanotrophic groups. Methanotrophs with type I mtracellular membranes include the genera Methylomonas, Methylobacter, and Methylococcus, which are all related to bacterra of the γ-subdivision of the Proteobacteria. Methanotrophs with type II membranes include Methylosinus and Methylocystis, which belong to the α-subdivision of the Proteobacterla (Table 1). There has been considerable interest in methanotrophs since it has been recognized that they are a major sink for atmospheric methane In many natural environments, where these aerobic bacteria are exposed to methane, arising from the biological production by methanogens, they are responsible for removal of much of this methane before it escapes to the atmosphere, and are therefore important in the global carbon cycle (see ref. 3 and chapters therein).

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Protocol
USD 49.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 84.99
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 109.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book
USD 109.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

References

  1. Bowman, J P., Sly, L I, Nicholas, P D., and Hayward, A C (1993) Revised taxonomy of the methanotrophs description of Methylobacter gen nov., emendanon of Methylococcus, validation of Methylosinus species and a proposal that the family Methylococcaceae includes only group I methanotrophs Int. J. Syst. Bactenol. 43, 735–753

    Article  Google Scholar 

  2. Brusseau, G A., Bulygma, E S., and Hanson, R. S (1994) Phylogenetic analysis and development of probes for differentiatmg methylotrophic bacteria. Appl Environ Microbiol 60, 626–636.

    PubMed  CAS  Google Scholar 

  3. Murrell, J C., and Kelly, D P (1993) Microbial Growth on Cl Compounds, Intercept, Andover, UK.

    Google Scholar 

  4. Murrell, J C. (1994) Molecular genetics of methane oxidation. Biodegradation 5, 145–159

    Article  PubMed  CAS  Google Scholar 

  5. Alvarez-Cohen, L, McCarty, P L, Boulygina, E, Brusseau, G, and Hanson, R. S (1992) Cometabolic biotransformation of trichloroethylene and chloroform by a bacterial consortium grown with methane. Appl Environ. Mzcrobiol. 58, 1886–1893.

    CAS  Google Scholar 

  6. Murrell, J C., Holmes, A J., McDonald, I. R., and Kenna, E (1995) The development of molecular ecology techniques for the detection of methanotrophs in the natural environment, in The Microbiology of Atmospheric Trace Gases: Sources, Sinks and Global Change Processes, (Murrell, J C and Kelly, D P., eds ), NATO ASI Series, Springer Verlag, pp 135–151

    Google Scholar 

  7. McDonald, I R., Kenna, E M., and Murrell, J C (1995) Detection of methan-otrophic bacteria in environmental samples by using the polymerase chain reaction. Appl Environ Microblol 61, 116–121

    CAS  Google Scholar 

  8. Semrau, J. D., Chlstoserdov, A., Lebron, J., Costello, A., Davagnino, J., Kenna, E, Holmes, A J, Finch, R, Murrell, J. C., and Lidstrom, M E (1995) Particulate methane monooxygenase genes in methanotrophs J Bacterzol 177, 3071–3079.

    CAS  Google Scholar 

  9. Bowman, J P (1992) The systematics of methane-utihzmg bacteria PhD Thesis, University of Queensland, Brisbane, Australia

    Google Scholar 

  10. Oakley, C. J., and Murrell, J. C. (1988) nifH genes in obligate methane oxidising bacteria FEMS Mlcroblol. Lett 49, 53–57

    Article  Google Scholar 

  11. Sommerville, C. J., Knight, I T., Straube, W L., and Colwell, R R. (1989) Simple, rapid method for direct isolation of nucleic acids from aquatic environments Appl Environ Microbiol 55, 548–554

    Google Scholar 

  12. Selenska, S., and Klingmuller, W (1991) DNA recovery and direct detection of Tn5 sequences from soil Lett Appl Microbiol 13, 21–24

    Article  PubMed  CAS  Google Scholar 

  13. Bruce, K D., Hiorns, W D., Hobman, J L. Osbom, A M., Stroke, P., and Ritchie, D A (1992) Amplification of DNA from native populations of soil bacteria by using the polymerase chain reaction. Appl Environ Microbiol. 58, 3413–3416

    PubMed  CAS  Google Scholar 

  14. Ltesack, W., Weyland, H, and Stackebrandt, E (1991) Potential risks of gene amplication by PCR as determined by 16s rDNA analysis of a mtxed-culture of strict barophilic bacteria Microb Ecol 21, 191–198

    Article  Google Scholar 

  15. Murrell, J C., McGowan, V., and Cardy, D L N (1993) Detection of methy-lotrophic bacteria in natural samples by molecular probing techniques Chemosphere 26, 1–11

    Article  CAS  Google Scholar 

  16. Sambrook, J., Frnsch, E F., and Mamatis, T (1989) Transfer of DNA from agarose gels to solid supports, in Molecular Cloning A Laboratory Manual, 2nd ed Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, p. 9.34.

    Google Scholar 

  17. Saunders, S E., and Burke, J F (1990) Rapid isolation of miniprep DNA for double strand sequencing Nucleic Acids Res l8, 4948

    Article  Google Scholar 

  18. Amann, R I, Stromley, J., Devereaux, R., Key, R., and Stahl, D A (1992) Molecular and microscopic identiftcatton of sulfate-reducing bacteria in multi-species biofilms Appl Environ Microbiol 58, 614–623

    PubMed  CAS  Google Scholar 

  19. Amann, R I, Ludwig, W., and Schleifer, K H (1995) Phylogenettc identification and in situ detection of individual microbial cells without cultivation Microbiol Rev 59, 143–169

    PubMed  CAS  Google Scholar 

  20. Holmes, A. J., Owens, N J P., and Murrell, J C (1995) Detection of novel marine methanotrophs using phylogenetic and functional gene probes after methane enrichment Microbiology 141, 1947–1955

    Article  PubMed  CAS  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Rights and permissions

Reprints and permissions

Copyright information

© 1997 Humana Press Inc, Totowa, NJ

About this protocol

Cite this protocol

McDonald, I.R., Holmes, A.J., Kenna, E.M., Murrell, J.C. (1997). Molecular Methods for the Detection of Methanotrophs. In: Bioremediation Protocols. Methods in Biotechnology™, vol 2. Humana Press. https://doi.org/10.1385/0-89603-437-2:111

Download citation

  • DOI: https://doi.org/10.1385/0-89603-437-2:111

  • Publisher Name: Humana Press

  • Print ISBN: 978-0-89603-437-2

  • Online ISBN: 978-1-59259-482-5

  • eBook Packages: Springer Protocols

Publish with us

Policies and ethics