Abstract
Insight into the dynamics of RNA biosynthesis, processing, and cellular activity is highly valuable because it will deepen our understanding of cell physiology and help explain how mRNA-misregulation contributes to the development of many diseases. To date, the study of mRNA inside cells is a challenge; many analytical approaches focus only on quantifying expression levels of transcripts and are not capable of reporting their intracellular locations, which have emerged as a critical determinant of RNA function. Similarly, techniques capable of probing RNA localization merely offer snapshots in fixed cells. Herein, we describe a protocol based on the bacteriophage MS2 genetic system for use in detecting mRNA in living cells.
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References
Penchovsky R (2013) Present and future RNA-based approaches to medical genomics. Int J Genomic Med 1:2
Urbanek MO, Galka-Marciniak P, Olejniczak M et al (2014) RNA imaging in living cells—methods and applications. RNA Biol 11:1083–1095
Dirks RW, Tanke HJ (2006) Advances in fluorescent tracking of nucleic acids in living cells. Biotechniques 40:489–496
Endoh T, Mie M, Kobatake E (2008) Direct detection of RNA transcription by FRET imaging using fluorescent protein probe. J Biotechnol 133:413–417
Monroy-Contreras R, Vaca L (2011) Molecular beacons: powerful tools for imaging RNA in living cells. J Nucleic Acids 2011:741723
Bann DV, Parent LJ (2012) Application of live-cell RNA imaging techniques to the study of retroviral RNA trafficking. Viruses 4:963–979
Ma B, Savas JN, Yu MS, Culver BP et al (2011) Huntingtin facilitates β-actin mRNA transport in dendrites of cortical neurons. Sci Rep 1:140
Ma B, Baj G, Tongiorgi E, Chao MV et al (2010) Localization of BDNF mRNA with the Huntington’s disease protein in rat brain. Mol Neurodegener 5:22
Chao JA, Yoon YJ, Singer RH (2012) Imaging translation in single cells using fluorescent microscopy. Cold Spring Harb Perspect Biol 4. doi:10.1101/cshperspect.a012310
Ni CZ, Syed R, Kodandapani R, Wickersham J et al (1995) Crystal structure of the MS2 coat protein dimer: implications for RNA binding and virus assembly. Structure 3:255–263
Shav-Tal Y, Darzacq X, Shenoy SM et al (2004) Dynamics of single mRNPs in nuclei of living cells. Science 304:1797–1800
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Ma, B., Tanese, N. (2017). RNA Imaging in Living Cells. In: Liehr, T. (eds) Fluorescence In Situ Hybridization (FISH). Springer Protocols Handbooks. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-662-52959-1_15
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DOI: https://doi.org/10.1007/978-3-662-52959-1_15
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Online ISBN: 978-3-662-52959-1
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