Skip to main content

Promoter Deletion Analysis Using a Dual-Luciferase Reporter System

  • Protocol
  • First Online:
Book cover Gene Regulation

Part of the book series: Methods in Molecular Biology ((MIMB,volume 977))

Abstract

Promoter deletion analysis is a useful tool for identifying important regulatory regions involved in transcriptional control of gene expression. In this approach, a series of promoter deletion fragments are fused to a reporter gene, such as chloramphenicol acetyltransferase or luciferase gene in a vector, and then transfected into cells for induction. Screening the expression level of the reporter gene using either a qualitative or a quantitative assay, allows to identify the regulatory regions of interest (e.g., cis-acting elements or enhancer) in the promoter.

Luciferase genes have been widely used as reporter genes for their sensitivity and efficiency. Firefly and Renilla luciferases are two commonly used reporters, which oxidize different substrates to generate quantifiable luminescence. Therefore, the enzymatic activities of firefly and Renilla luciferases can be sequentially measured in a single sample by controlling reaction conditions. Here, we describe a dual-luciferase reporter assay, where the promoter of interest is fused to a firefly luciferase reporter and is co-transfected into cells with an internal control vector (pRL-CMV) to express Renilla luciferase. Both the Firefly and Renilla luciferases are measured using a dual-luciferase reporter assay system which improves experimental accuracy.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Protocol
USD 49.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 84.99
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 159.00
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book
USD 109.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

References

  1. Riethoven JJ (2010) Regulatory regions in DNA: promoters, enhancers, silencers, and insulators. Methods Mol Biol 674:33–42

    Article  PubMed  CAS  Google Scholar 

  2. Fitzgerald PC, Shlyakhtenko A, Mir AA, Vinson C (2004) Clustering of DNA sequences in human promoters. Genome Res 14:1562–1574

    Article  PubMed  CAS  Google Scholar 

  3. Breathnach R, Chambon P (1981) Organization and expression of eucaryotic split genes coding for proteins. Annu Rev Biochem 50:349–383

    Article  PubMed  CAS  Google Scholar 

  4. Dynan WS, Tjian R (1985) Control of eukaryotic messenger RNA synthesis by sequence-specific DNA-binding proteins. Nature 316:774–778

    Article  PubMed  CAS  Google Scholar 

  5. Alberts B, Johnson A, Lewis J, Raff M, Roberts K, Walter P (2002) Molecular biology of the cell. Garland Science, New York

    Google Scholar 

  6. Bookstein R, Rio P, Madreperla SA et al (1990) Promoter deletion and loss of retinoblastoma gene expression in human prostate carcinoma. Proc Natl Acad Sci USA 87:7762–7767

    Article  PubMed  CAS  Google Scholar 

  7. Heckman CA, Cao T, Somsouk L et al (2003) Critical elements of the immunoglobulin heavy chain gene enhancers for deregulated expression of Bcl-2. Cancer Res 63:6666–6673

    PubMed  CAS  Google Scholar 

  8. Soboleski MR, Oaks J, Halford WP (2005) Green fluorescent protein is a quantitative reporter of gene expression in individual eukaryotic cells. FASEB J 19:440–442

    PubMed  CAS  Google Scholar 

  9. Alam J, Cook JL (1990) Reporter genes: application to the study of mammalian gene transcription. Anal Biochem 188:245–254

    Article  PubMed  CAS  Google Scholar 

  10. Bronstein I, Fortin J, Stanley PE et al (1994) Chemiluminescent and bioluminescent reporter gene assays. Anal Biochem 219:169–181

    Article  PubMed  CAS  Google Scholar 

  11. Ow DW, de Wet JR, Helinski DR et al (1986) Transient and stable expression of the firefly luciferase gene in plant cells and transgenic plants. Science 234:856–859

    Article  PubMed  CAS  Google Scholar 

  12. de Wet JR, Wood KV, Deluca M et al (1987) Firefly luciferase gene: structure and expression in mammalian cells. Mol Cell Biol 7:725–737

    PubMed  Google Scholar 

  13. Fraga H, Fernandes D, Fontes R et al (2005) Coenzyme A affects firefly luciferase luminescence because it acts as a substrate and not as an allosteric effector. FEBS J 272:5206–5216

    Article  PubMed  CAS  Google Scholar 

  14. Matthews JC, Hori K, Cormier MJ (1977) Purification and properities of Renilla reniformisluciferase. Biochemistry 16:85–91

    Article  PubMed  CAS  Google Scholar 

  15. Hannah RR, Jennens-Clough ML, Wood KV (1998) Rapid luciferase reporter assay systems for high throughput studies. Promega Notes 65:9–14

    Google Scholar 

  16. Liu R, Liu H, Chen X et al (2001) Regulation of CSF1 promoter by the SWI/SNF-like BAF complex. Cell 106:309–318

    Article  PubMed  CAS  Google Scholar 

  17. Chen X, Wu J-M, Hornischer K et al (2006) TiProD: the tissue-specific promoter database. Nucleic Acids Res 34:D104–D107

    Article  PubMed  CAS  Google Scholar 

  18. Xu YZ, Thuraisingam T, Marino R, Radzioch D (2011) Recruitment of SWI/SNF complex is required for transcriptional activation of SLC11A1 gene during macrophage differentiation of HL-60 cells. J Biol Chem 286:12839–12849

    Article  PubMed  CAS  Google Scholar 

  19. Ausubel FM, Brent R, Kingston RE et al (2001) Current protocols in molecular biology, vol 1. Wiley, New York, p 2.5.3

    Google Scholar 

  20. Adkins S, Burmeister M (1996) Visualization of DNA in agarose gels as migrating colored bands: applications for preparative gels and educational demonstrations. Anal Biochem 240:17–23

    Article  PubMed  CAS  Google Scholar 

  21. Dower WJ, Miller JF, Ragsdale CW (1988) High efficiency transformation of E. coli by high voltage electroporation. Nucleic Acids Res 16:6127–6145

    Article  PubMed  CAS  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2013 Springer Science+Business Media, LLC

About this protocol

Cite this protocol

Xu, Y.Z., Kanagaratham, C., Jancik, S., Radzioch, D. (2013). Promoter Deletion Analysis Using a Dual-Luciferase Reporter System. In: Bina, M. (eds) Gene Regulation. Methods in Molecular Biology, vol 977. Humana Press, Totowa, NJ. https://doi.org/10.1007/978-1-62703-284-1_7

Download citation

  • DOI: https://doi.org/10.1007/978-1-62703-284-1_7

  • Published:

  • Publisher Name: Humana Press, Totowa, NJ

  • Print ISBN: 978-1-62703-283-4

  • Online ISBN: 978-1-62703-284-1

  • eBook Packages: Springer Protocols

Publish with us

Policies and ethics