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DNA Computing and Molecular Programming

23rd International Conference, DNA 23, Austin, TX, USA, September 24–28, 2017, Proceedings

  • Conference proceedings
  • © 2017

Overview

Editors:
  1. Robert Brijder

    1. Hasselt University, Diepenbeek, Belgium

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    You can also search for this editor in PubMed   Google Scholar

  2. Lulu Qian

    1. California Institute of Technology, Pasadena, USA

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    You can also search for this editor in PubMed   Google Scholar

Part of the book series: Lecture Notes in Computer Science (LNCS, volume 10467)

Part of the book sub series: Theoretical Computer Science and General Issues (LNTCS)

Included in the following conference series:

Conference proceedings info: DNA 2017.

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Table of contents (16 papers)

  1. Front Matter

    Pages I-XII
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  2. Automated, Constraint-Based Analysis of Tethered DNA Nanostructures

    • Matthew R. Lakin, Andrew Phillips
    Pages 1-16

  3. DNA-Templated Synthesis Optimization

    • Bjarke N. Hansen, Kim S. Larsen, Daniel Merkle, Alexei Mihalchuk
    Pages 17-32

  4. Ruleset Optimization on Isomorphic Oritatami Systems

    • Yo-Sub Han, Hwee Kim
    Pages 33-45

  5. Unknotted Strand Routings of Triangulated Meshes

    • Abdulmelik Mohammed, Mustafa Hajij
    Pages 46-63

  6. The Design Space of Strand Displacement Cascades with Toehold-Size Clamps

    • Boya Wang, Chris Thachuk, Andrew D. Ellington, David Soloveichik
    Pages 64-81

  7. A Stochastic Molecular Scheme for an Artificial Cell to Infer Its Environment from Partial Observations

    • Muppirala Viswa Virinchi, Abhishek Behera, Manoj Gopalkrishnan
    Pages 82-97

  8. Complexities for High-Temperature Two-Handed Tile Self-assembly

    • Robert Schweller, Andrew Winslow, Tim Wylie
    Pages 98-109

  9. A DNA Neural Network Constructed from Molecular Variable Gain Amplifiers

    • Sherry Xi Chen, Georg Seelig
    Pages 110-121

  10. A Stochastic Approach to Shortcut Bridging in Programmable Matter

    • Marta Andrés Arroyo, Sarah Cannon, Joshua J. Daymude, Dana Randall, Andréa W. Richa
    Pages 122-138

  11. A Minimal Requirement for Self-assembly of Lines in Polylogarithmic Time

    • Yen-Ru Chin, Jui-Ting Tsai, Ho-Lin Chen
    Pages 139-154

  12. Robust Detection in Leak-Prone Population Protocols

    • Dan Alistarh, Bartłomiej Dudek, Adrian Kosowski, David Soloveichik, Przemysław Uznański
    Pages 155-171

  13. Inferring Parameters for an Elementary Step Model of DNA Structure Kinetics with Locally Context-Dependent Arrhenius Rates

    • Sedigheh Zolaktaf, Frits Dannenberg, Xander Rudelis, Anne Condon, Joseph M. Schaeffer, Mark Schmidt et al.
    Pages 172-187

  14. Simplifying Analyses of Chemical Reaction Networks for Approximate Majority

    • Anne Condon, Monir Hajiaghayi, David Kirkpatrick, Ján Maňuch
    Pages 188-209

  15. Chemical Boltzmann Machines

    • William Poole, Andrés Ortiz-Muñoz, Abhishek Behera, Nick S. Jones, Thomas E. Ouldridge, Erik Winfree et al.
    Pages 210-231

  16. A General-Purpose CRN-to-DSD Compiler with Formal Verification, Optimization, and Simulation Capabilities

    • Stefan Badelt, Seung Woo Shin, Robert F. Johnson, Qing Dong, Chris Thachuk, Erik Winfree
    Pages 232-248

  17. Thermodynamic Binding Networks

    • David Doty, Trent A. Rogers, David Soloveichik, Chris Thachuk, Damien Woods
    Pages 249-266

  18. Back Matter

    Pages 267-267
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Other volumes

  1. DNA Computing and Molecular Programming

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About this book

This book constitutes the refereed proceedings of the 23th International Conference on DNA Computing and Molecular Programming, DNA 23, held Austin, TX, USA, in September 2017. The 16 full papers presented were carefully selected from 23 submissions. Research in DNA computing aims to draw together mathematics, computerscience, physics, chemistry, biology, and nanotechnology to address the analysis, design, and synthesis of information-based molecular systems. The papers address all areas related to biomolecular computing such as: algorithms and models for computation with biomolecular systems; computational processes in vitro and in vivo; molecular motors and molecular robotics; studies of fault-tolerance and error correction; software tools for analysis, simulation, and design; synthetic biology and in vitro evolution; applications in engineering, physics, chemistry, biology, and medicine.

 

Editors and Affiliations

  • Hasselt University, Diepenbeek, Belgium

    Robert Brijder

  • California Institute of Technology, Pasadena, USA

    Lulu Qian

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