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Development of a suicidal vector-cloning system based on butanal susceptibility due to an expression of YqhD aldehyde reductase

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Abstract

Previously, we observed butanal/propanal sensitivity of Escherichia coli K-12 when cells overexpress YqhD protein, a NADPH dependent aldehyde reductase, possibly due to an accumulation of butanol/propanol in vivo as the reaction products. Based on this finding, we developed a suicidal vector-cloning system derived from pUC19, in which lacZ was substituted with the yqhD gene. As a result, when foreign DNA was inserted into its multiple cloning sites by disrupting an expression of YqhD, the recombinants survived on butanal/propanal containing plate, whereas cells containing the YqhD vector died because of the alcohol production by YqhD. The cloning efficiency, estimated based on colony PCR and enzyme digestion, was achieved more than 90% when the suicidal vector system was used. Moreover, the plasmid vector itself was stably maintained in the cell, presumably due to its ability to remove toxic aldehydes being accumulated in E. coli cell by metabolic stress.

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References

  • Anne, I., Goma, G., and Soucaille, P. 1989. Effects of various alcoholic supplements on the growth rate of Clostridium acetobutylicum ATCC 824. Appl. Microbiol. Biotechnol. 31, 179–183.

    Article  Google Scholar 

  • Bernard, P. and Couturier, M. 1992. Cell killing by the F plasmid CcdB protein involves poisoning of DNA-topoisomerase II complexes. J. Mol. Biol. 226, 735–745.

    Article  PubMed  CAS  Google Scholar 

  • Bernard, P., Gabant, P., Bahassi, E.M., and Couturier, M. 1994. Positive-selection vectors using the F plasmid ccdB killer gene. Gene 148, 71–74.

    Article  PubMed  CAS  Google Scholar 

  • Bernard, P., Kezdy, K.E., Van Melderen, L., Steyaert, J., Wyns, L., Pato, M.L., Higgins, P.N., and Couturier, M. 1993. The F plasmid CcdB protein induces efficient ATP-dependent DNA cleavage by gyrase. J. Mol. Biol. 234, 534–541.

    Article  PubMed  CAS  Google Scholar 

  • Burioni, R., Plaisant, P., Riccio, M.L., Rossolini, G.M., and Satta, G. 1995. A new plasmid cloning vector for direct detection of recombinant clones, based on inactivation of a bacterial acid phosphatase-encoding gene. New Microbiol. 18, 201–206.

    PubMed  CAS  Google Scholar 

  • Chaffin, D.O. and Rubens, C.E. 1998. Blue/white screening of recombinant plasmids in Gram-positive bacteria by interruption of alkaline phosphatase gene (phoZ) expression. Gene 219, 91–99.

    Article  PubMed  CAS  Google Scholar 

  • Clark, E. and Cirvilleri, G. 1994. Cloning cassettes containing the reporter gene xylE. Gene 151, 329–330.

    Article  PubMed  CAS  Google Scholar 

  • Dedonder, R. 1966. Levansucrase from Bacillus subtilis. Methods Emzymol. 8, 500–505.

    Article  CAS  Google Scholar 

  • Friehs, K. 2004. Plasmid copy number and plasmid stability. Adv. Biochem. Eng. Biotechnol. 86, 47–82.

    PubMed  CAS  Google Scholar 

  • Gabant, P., Szpirer, C.Y., Couturier, M., and Faelen, M. 1998. Direct selection cloning vectors adapted to the genetic analysis of Gram-negative bacteria and their plasmids. Gene 207, 87–92.

    Article  PubMed  CAS  Google Scholar 

  • Gay, P., Le Coq, D., Steinmetz, M., Berkelman, T., and Kado, C.I. 1985. Positive selection procedure for entrapment of insertion sequence elements in Gram-negative bacteria. J. Bacteriol. 164, 918–921.

    PubMed  CAS  Google Scholar 

  • Gay, P., Le Coq, D., Steinmetz, M., Ferrari, E., and Hoch, J.A. 1983. Cloning structural gene sacB, which codes for exoenzyme levansucrase of Bacillus subtilis: expression of the gene in Escherichia coli. J. Bacteriol. 153, 1424–1431.

    PubMed  CAS  Google Scholar 

  • Goh, S. and Good, L. 2008. Plasmid selection in Escherichia coli using an endogenous essential gene marker. BMC Biotechnol. 8, 61.

    Article  PubMed  Google Scholar 

  • Henrich, B. and Schmidtberger, B. 1995. Positive-selection vector with enhanced lytic potential based on a variant of phi X174 phage gene E. Gene 154, 51–54.

    Article  PubMed  CAS  Google Scholar 

  • Inouye, S., Ogawa, H., Yasuda, K., Umesono, K., and Tsuji, F.I. 1997. A bacterial cloning vector using a mutated Aequorea green fluorescent protein as an indicator. Gene 189, 159–162.

    Article  PubMed  CAS  Google Scholar 

  • Jager, W., Schafer, A., Puhler, A., Labes, G., and Wohlleben, W. 1992. Expression of the Bacillus subtilis sacB gene leads to sucrose sensitivity in the Gram-positive bacterium Corynebacterium glutamicumbut not in Streptomyces lividans. J. Bacteriol. 174, 5462–5465.

    PubMed  CAS  Google Scholar 

  • Jarboe, L.R. 2011. YqhD: a broad-substrate range aldehyde reductase with various applications in production of biorenewable fuels and chemicals. Appl. Microbiol. Biotechnol. 89, 249–257.

    Article  PubMed  CAS  Google Scholar 

  • Jean, B., Masion, E., Amine, J., Petitdemange, H., and Gay, R. 1987. Inhibitor effect of products of metabolism on growth of Clostridium acetobutylicum. Appl. Microbiol. Biotechnol. 26, 568–573.

    Article  Google Scholar 

  • Kasper, M., Roehlecke, C., Witt, M., Fehrenbach, H., Hofer, A., Miyata, T., Weigert, C., Funk, R.H., and Schleicher, E.D. 2000. Induction of apoptosis by glyoxal in human embryonic lung epithelial cell line L132. Am. J. Respir. Cell Mol. Biol. 23, 485–491.

    PubMed  CAS  Google Scholar 

  • Lee, C., Kim, I., Lee, J., Lee, K.L., Min, B., and Park, C. 2010. Transcriptional activation of the aldehyde reductase YqhD by YqhC and its implication in glyoxal metabolism of Escherichia coli K-12. J. Bacteriol. 192, 4205–4214.

    Article  PubMed  CAS  Google Scholar 

  • Miller, E.N., Jarboe, L.R., Yomano, L.P., York, S.W., Shanmugam, K.T., and Ingram, L.O. 2009. Silencing of NADPH-dependent oxidoreductase genes (yqhD and dkgA) in furfural-resistant ethanologenic Escherichia coli. Appl. Environ. Microbiol. 75, 4315–4323.

    Article  PubMed  CAS  Google Scholar 

  • Mlakar, A., Batna, A., Dudda, A., and Spiteller, G. 1996. Iron (II) ions induced oxidation of ascorbic acid and glucose. Free Radic. Res. 25, 525–539.

    Article  PubMed  CAS  Google Scholar 

  • Pelicic, V., Reyrat, J.M., and Gicquel, B. 1996. Expression of the Bacillus subtilis sacB gene confers sucrose sensitivity on mycobacteria. J. Bacteriol. 178, 1197–1199.

    PubMed  CAS  Google Scholar 

  • Perez, J.M., Arenas, F.A., Pradenas, G.A., Sandoval, J.M., and Vasquez, C.C. 2008. Escherichia coli YqhD exhibits aldehyde reductase activity and protects from the harmful effect of lipid peroxidation-derived aldehydes. J. Biol. Chem. 283, 7346–7353.

    Article  PubMed  CAS  Google Scholar 

  • Riccio, M.L., Rossolini, G.M., Lombardi, G., Chiesurin, A., and Satta, G. 1997. Expression cloning of different bacterial phosphatase-encoding genes by histochemical screening of genomic libraries onto an indicator medium containing phenolphthalein diphosphate and methyl green. J. Appl. Microbiol. 82, 177–185.

    PubMed  CAS  Google Scholar 

  • Sambrook, J. and Russel, D.W. 2001. Molecular cloning; A labo ratory manual, 3rd ed. CSHL press, New York, N.Y., USA.

    Google Scholar 

  • Schlieper, D., von Wilcken-Bergmann, B., Schmidt, M., Sobek, H., and Muller-Hill, B. 1998. A positive selection vector for cloning of long polymerase chain reaction fragments based on a lethal mutant of the crp gene of Escherichia coli. Anal. Biochem. 257, 203–209.

    Article  PubMed  CAS  Google Scholar 

  • Steinmetz, M., Le Coq, D., Djemia, H.B., and Gay, P. 1983. Genetic analysis of sacB, the structural gene of a secreted enzyme, levansucrase of Bacillus subtilis Marburg. Mol. Gen. Genet. 191, 138–144.

    Article  PubMed  CAS  Google Scholar 

  • Sulzenbacher, G., Alvarez, K., Van Den Heuvel, R.H., Versluis, C., Spinelli, S., Campanacci, V., Valencia, C., Cambillau, C., Eklund, H., and Tegoni, M. 2004. Crystal structure of E. coli alcohol dehydrogenase YqhD: evidence of a covalently modified NADP coenzyme. J. Mol. Biol. 342, 489–502.

    Article  PubMed  CAS  Google Scholar 

  • Thornalley, P.J. 2002. Glycation in diabetic neuropathy: characteristics, consequences, causes, and therapeutic options. Int. Rev. Neurobiol. 50, 37–57.

    Article  PubMed  CAS  Google Scholar 

  • Van Melderen, L., Bernard, P., and Couturier, M. 1994. Lon-dependent proteolysis of CcdA is the key control for activation of CcdB in plasmid-free segregant bacteria. Mol. Microbiol. 11, 1151–1157.

    Article  PubMed  Google Scholar 

  • Wells-Knecht, K.J., Zyzak, D.V., Litchfield, J.E., Thorpe, S.R., and Baynes, J.W. 1995. Mechanism of autoxidative glycosylation: identification of glyoxal and arabinose as intermediates in the autoxidative modification of proteins by glucose. Biochemistry 34, 3702–3709.

    Article  PubMed  CAS  Google Scholar 

  • Yazynin, S., Lange, H., Mokros, T., Deyev, S., and Lemke, H. 1999. A new phagemid vector for positive selection of recombinants based on a conditionally lethal barnase gene. FEBS Lett. 452, 351–354.

    Article  PubMed  CAS  Google Scholar 

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Correspondence to Chankyu Park.

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Lee, C., Park, C. Development of a suicidal vector-cloning system based on butanal susceptibility due to an expression of YqhD aldehyde reductase. J Microbiol. 50, 249–255 (2012). https://doi.org/10.1007/s12275-012-1438-5

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  • DOI: https://doi.org/10.1007/s12275-012-1438-5

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