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Transcriptional profiling in cotton associated with Bacillus subtilis (UFLA285) induced biotic-stress tolerance

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Abstract

Plant growth promoting rhizobacteria (PGPR) confer disease resistance in many agricultural crops. In the case of Bacillus subtilis (UFLA285) isolated from the cotton producing state of Mato Grosso (Brazil), in addition to inducing foliar and root growth, disease resistance against damping-off caused by Rhizoctonia solani was observed. The aim of this cotton study was to identify gene transcriptional events altered with exposure to the PGPR strain UFLA285 in infected plants. Global gene transcription was profiled using a commercially-available cotton gene chip; cotton plants with and without UFLA285-seed treatment were infected with R. solani 9-days after planting and harvested on day14. Microarray data of stem tissue revealed 247 genes differentially regulated in infected plants, seed treated versus untreated with UFLA285. Transcripts encoding disease resistance proteins via jasmonate/ethylene signaling as well as osmotic regulation via proline synthesis genes were differentially expressed with UFLA285 induction. Consistent with transcriptional regulation, UFLA285 increased plant-proline accumulation and dry weight. This study has identified transcriptional changes in cotton, induced by the beneficial soil bacterium UFLA285 and associated with disease control.

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References

  • Able AJ (2003) Role of reactive oxygen species in the response of barley to necrotrophic pathogens. Protoplasma 221:137–143

    Article  PubMed  CAS  Google Scholar 

  • Bates LS, Waldren RP, Teare ID (1973) Rapid determination of free proline for water stress studies. Plant Soil 39:205–207

    Article  CAS  Google Scholar 

  • Buchanan BB, Gruissem W, Jones RL (2000) Biochemistry and molecular biology of plants. American Society of Plant Physiologists, Rockville

    Google Scholar 

  • Cardoso JE, Echandi E (1987) Nature of protection of bean seedlings from Rhizoctonia root rot by a binucleate Rhizoctonia-like fungus. Phytopathology 77:1548–1551

    Article  Google Scholar 

  • Dorey S, Baillieul F, Pierrel MA, Saindrenan P, Fritig B, Kauffmann S (1997) Spatial and temporal induction of cell death, defense genes, and accumulation of salicylic acid in tobacco leaves reacting hypersensitively to a fungal glycoprotein elicitor. Mol Plant Microbe Interact 10:646–655

    Article  CAS  Google Scholar 

  • Dowd C, Wilson IW, McFadden H (2004) Gene expression profile changes in cotton root and hypocotyl tissues in response to infection with Fusarium oxysporum f.sp. vasinfectum. Mol Plant Microbe Interact 17:654–667

    Article  PubMed  CAS  Google Scholar 

  • Eckardt NA (2001) Move it on out with MATEs. Plant Cell 13:1477–1480

    Article  PubMed  CAS  Google Scholar 

  • Hammerschmidt R, Kuc J (1995) Induced resistance to disease in plants: developments in plant pathology. Kluwer Academic, Dordrech

    Google Scholar 

  • Holstein SHE, Oliviusson P (2005) Sequence analysis of Arabidopsis thaliana E/ANTH-domain-containing proteins: membrane tethers of the claritin-dependent vesicle budding machinery. Protoplasma 226:13–21

    Article  PubMed  CAS  Google Scholar 

  • Hulugalle NR, Scott F (2008) A review of the changes in soil quality and profitability accomplished by sowing rotation crops after cotton in Australian Vertosols from 1970 to 2006. Australian J Soil Res 46:173–190

    Article  Google Scholar 

  • Jabaji-Hare S, Neate SM (2005) Nonpathogenic binucleate Rhizoctonia spp. and benzothiadiazole protect cotton seedlings against Rhizoctonia damping-off and Alternaria leaf spot in cotton. Phytopathology 95:1030–1036

    Article  PubMed  Google Scholar 

  • Jeger MJ, Viljanen-Rollinson SLH (2001) The use of the area under the disease-progress curve (AUDPC) to assess quantitative disease resistance in crop cultivars. Theor Appl Genet 102:32–40

    Article  Google Scholar 

  • Keinath AP, Batson WE Jr, Caceres J, Elliott ML, Sumner DR, Brannen PM, Rothrock CS, Huber DM, Benson DM, Conway KE, Schneider RN, Motsenbocker CE, Cubeta MA, Ownley BH, Canaday CH, Adams PD, Backman PA, Fajardo J (2000) Evaluation of biological and chemical seed treatments to improve stand of snap bean across the southern United States. Crop Protect 19:501–509

    Article  CAS  Google Scholar 

  • Kirkpatrick TL, Rothrock CS (2001) Compendium of cotton diseases, 2 ed. American Phytopathological Society, Saint Paul

    Google Scholar 

  • Kronstad JW (2000) Fungal pathology. Academic Publishers, Kluwer The Netherlands

    Google Scholar 

  • Lopez-Lavalle LB, McFadden H, Brubaker CL (2007) The effect of Gossypium C-genome chromosomes on resistance to Fusarium wilt in allotetraploid cotton. Theoretical App Gene 115:477–488

    Article  Google Scholar 

  • Malik KA, Hafeez FY, Miirza FS, Hameed GR, Bilal R (2005) Rhizospheric plant-microbe interactions for sustainable agriculture. In: Wang YP, Lin M, Tian ZX, Elmerich C, Newton WE (eds) Biological nitrogen fixation, sustainable agriculture and the environment, 1st edn. Springer, Dorchdrech, pp 257–260

    Chapter  Google Scholar 

  • Manian S, Manibhushanrao K (1990) Influence of some factors on the survival of Rhizoctonia solani in soil. Tropical Agric 67:207–208

    Google Scholar 

  • Martinez C, Baccou JC, Bresson E, Baissac Y, Daniel JF, Jalloul A, Montillet JL, Geiger JP, Assigbetse K, Nicole M (2000) Salicylic acid mediated by the oxidative burst is a key molecule in local and systemic responses of cotton challenged by an avirulent race of Xanthomonas campestris pv malvacearum. Plant Physiol 122:757–766

    Article  PubMed  CAS  Google Scholar 

  • Medeiros FH, Souza RM, Ferro HM, Medeiros FC, Pomella AW, Machado JC, Santos Neto H, Soares DA, Zanotto E, Paré PW (2008) Bacillus spp. to manage seed-born Colletotrichum gossypii var. cephalosporioides damping-off. Phytopathology 98:S102

    Google Scholar 

  • Mondal KK, Verma JP (2002) Biological control of cotton diseases. In: Gnanamanickam SS (ed) Biological control of crop diseases. M.Dekker, New York, pp 96–119

    Google Scholar 

  • Muthusamya BP, Natarajana P, Zhoua X, Graham TR (2009) Linking phospholipid flippases to vesicle-mediated protein transport. Biochim Biophys Acta Mol Cell Biol Lipid 1791:612–619

    Google Scholar 

  • Parida A, Dagaonkar V, Phalak M, Aurangabadkarl L (2008) Differential responses of the enzymes involved in proline biosyntheis and degradation in drought tolerant and sensitive cotton genotypes during drought stress and recovery. Acta Physiol Plantarum 30:619–627

    Article  CAS  Google Scholar 

  • Pieterse CMJ, Van Wees SCM, Ton J, Van Pelt JA, Van Loon LC (2002) Signalling in rhizobacteria-induced systemic resistance in Arabidopsis thaliana. Plant Biology 4:535–544

    Article  CAS  Google Scholar 

  • Pieterse CMJ, Van Der Ent S, Van Pelt JA, Van Loon LC (2007) The role of ethylene in rhizobacteria-induced systemic resistance (ISR). In: Ramina A et al (eds) Advances in plant ethylene research, 7th edn. Springer, Dorchdrech, pp 325–331

    Chapter  Google Scholar 

  • Ralston L, Kwon ST, Schoenbeck M, Ralston J, Schenk DJ, Coates RM, Chappell J (2001) Cloning heterologous expression and functional characterization of 5-epi-aristolochene-1,3-dihydrolase from tobacco (Nicotiana tabacum). Archives Biochem Biophysics 393:222–235

    Article  CAS  Google Scholar 

  • Ramanjulu S, Bartels D (2002) Drought and desication-induced modulation of gene expression in plants. Plant Cell Environment 25:141–151

    Article  CAS  Google Scholar 

  • Shaner G, Finney RE (1977) The effect of nitrogen fertilization on the expression of slow-mildewing resistance in Knox wheat. Phytopathology 67:1051–1056

    Article  CAS  Google Scholar 

  • Taiz L, Zeiger E (1991) Plant physiology. The Benjamin/Cummings Publishing Co., Inc., Redwood City

    Google Scholar 

  • Tiburzy R, Reisener HJ (1990) Resistance of wheat to Puccinia graminis f. sp. tritici: association of the hypersensitive reaction with the cellular accumulation of lignin-like material and callose. Physiol Mol Plant Path 36:109–120

    Article  CAS  Google Scholar 

  • Udall JA, Flagel LE, Cheung F, Woodward AW, Hovav R, Rapp RA, Swanson JM, Lee JJ, Gingle AR, Nettleton D, Town CD, Chen ZJ, Wendel JF (2007) Spotted cotton oligonucleotide microarrays for gene expression analysis. BMC Genomics 8:81

    Article  PubMed  Google Scholar 

  • Vorwerk S, Somerville S, Somerville C (2004) The role of plant cell wall polysaccharide composition in disease resistance. Trends Plant Sci 9:203–209

    Article  PubMed  CAS  Google Scholar 

  • Wan CY, Wilkins TA (1994) A modified hot borate method significantly enhances the yield of high-quality RNA from cotton (Gossypium hirsutum L.). Anal Biochem 223:7–12

    Article  PubMed  CAS  Google Scholar 

  • Wang Y, Ohara Y, Nakayashiki H, Tosa Y, Mayama S (2005) Microarray analysis of the gene expression profile induced by the endophytic plant growth-promoting rhizobacteria, Pseudomonas fluorescens FPT9601-T5 in Arabidopsis. Mol Plant Microbe Interact 18:385–396

    Article  PubMed  CAS  Google Scholar 

  • Xie X, Zhang H, Pare PW (2009) Sustained growth promotion in Arabidopsis with long-term exposure to the beneficial soil bacterium Bacillus substilis (GB03). Plant Signal Behav 4:948–953

    Google Scholar 

  • Yi HS, Heil M, Adame-Alvarez RM, Ballhorn DJ, Ryu CM (2009) Airborne induction and priming of plant defenses against a bacterial pathogen. Plant Physiol 151:2152–2161

    Article  PubMed  CAS  Google Scholar 

  • Zabala G, Zou J, Tuteja J, Gonzalez D, Clough SJ, Vodkin LO (2006) Transcriptome changes in the phenylpropanoid pathway of Glycine max in response to Pseudomonas syringae infection. BMC Plant Biology 6:26

    Article  PubMed  Google Scholar 

  • Zhang H, Kim MS, Krishnamachari V, Payton P, Sun Y, Grimson M, Farag MA, Ryu CM, Allen R, Melo IS, Pare PW (2007) Rhizobacterial volatile emissions regulate auxin homeostasis and cell expansion in Arabidopsis. Planta 226:839–851

    Article  PubMed  CAS  Google Scholar 

  • Zhang H, Kim MS, Sun Y, Dowd SE, Shi H, Pare PW (2008) Soil bacteria confer plant salt tolerance by tissue-specific regulation of the sodium transporter HKT1. Mol Plant Microbe Interact 21:737–744

    Article  PubMed  Google Scholar 

Download references

Acknowledgements

Financial assistance was provided in part by a grant from the Robert Welch Foundation (D-1478) and comments on an earlier draft of this manuscript were provided by Dr. Huazhong Shi.

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Correspondence to Paul W. Paré.

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Responsible Editor: Jesus Mercado-Blanco.

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Medeiros, F.H.V., Souza, R.M., Medeiros, F.C.L. et al. Transcriptional profiling in cotton associated with Bacillus subtilis (UFLA285) induced biotic-stress tolerance. Plant Soil 347, 327–337 (2011). https://doi.org/10.1007/s11104-011-0852-5

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