1. Unassigned Codons, Nonsense Suppression, and Anticodon Modifications in the Evolution of the Genetic Code

   • Peter T. S. van der Gulik
   • Wouter D. Hoff

   OriginalPaper 11 November 2011 Pages: 59 - 69

   

2. A Chimeric Chromosome in the Ciliate Oxytricha Resulting from Duplication

   • Yi Zhou
   • Helmae Wubneh
   • Laura F. Landweber

   Letter 22 October 2011 Pages: 70 - 73

   

3. Interspecific and Intragenic Differences in Codon Usage Bias Among Vertebrate Myosin Heavy-Chain Genes

   • Mikio C. Aoi
   • Bryan C. Rourke

   OriginalPaper 14 September 2011 Pages: 74 - 93

   

4. Selection and constraint on regulatory elements in Drosophila simulans

   • Tami Cruickshank
   • Phil Nista

   OriginalPaper 09 September 2011 Pages: 94 - 100

   

5. A Conserved Regulatory Element in the Mammalian β-Globin Promoters

   • Ryoiti Kiyama
   • Yuko Wada-Kiyama

   OriginalPaper 24 September 2011 Pages: 101 - 108

   

6. Prestin Shows Divergent Evolution Between Constant Frequency Echolocating Bats

   • Bin Shen
   • Rafael Avila-Flores
   • Shuyi Zhang

   OriginalPaper 24 September 2011 Pages: 109 - 115

   

7. Reconstructing the Fungal Tree of Life Using Phylogenomics and a Preliminary Investigation of the Distribution of Yeast Prion-Like Proteins in the Fungal Kingdom

   • Edgar M. Medina
   • Gary W. Jones
   • David A. Fitzpatrick

   OriginalPaper 22 September 2011 Pages: 116 - 133

   

8. Phylogenetic and Preliminary Phenotypic Analysis of Yeast PAQR Receptors: Potential Antifungal Targets

   • Nancy Y. Villa
   • Patricia Moussatche
   • Thomas J. Lyons

   OriginalPaper Open access 19 October 2011 Pages: 134 - 152

   

9. Selection-Driven Divergence After Gene Duplication in Arabidopsis thaliana

   • Toni I. Gossmann
   • Karl J. Schmid

   OriginalPaper 02 October 2011 Pages: 153 - 165

   

10. Amphiphilic α-Helical Potential: A Putative Folding Motif Adding Few Constraints to Protein Evolution

    • S. Y. Ryan Lee
    • William Parker

    OriginalPaper 30 October 2011 Pages: 166 - 180

    

11. Ephemeral Association Between Gene CG5762 and Hybrid Male Sterility in Drosophila Sibling Species

    • Daina Ma
    • Pawel Michalak

    OriginalPaper 04 November 2011 Pages: 181 - 187

    

12. An Expansion of Age Constraints for Microbial Clades that Lack a Conventional Fossil Record Using Phylogenomic Dating

    • Carrine E. Blank

    OriginalPaper 22 November 2011 Pages: 188 - 208

    

13. Evolution of the TOR Pathway

    • Teunis J. P. van Dam
    • Fried J. T. Zwartkruis
    • Berend Snel

    OriginalPaper Open access 05 November 2011 Pages: 209 - 220

    

14. Self-Replication Reactions Dependent on Tertiary Interaction Motifs in an RNA Ligase Ribozyme

    • Rei Ohmori
    • Hirohide Saito
    • Tan Inoue

    OriginalPaper 12 November 2011 Pages: 221 - 229

    

15. Genome-Wide Comparative Analysis of pogo-Like Transposable Elements in Different Fusarium Species

    • Marie Dufresne
    • Olivier Lespinet
    • Aurélie Hua-Van

    OriginalPaper 18 November 2011 Pages: 230 - 243

    

16. Evaluating the Impact of Post-Mortem Damage in Ancient DNA: A Theoretical Approach

    • Martyna Molak
    • Simon Y. W. Ho

    OriginalPaper 20 November 2011 Pages: 244 - 255