Volume 5, supplement issue 9, December 2011
Genetic Analysis Workshop 17: Unraveling Human Exome Data
- Issue editors
-
- S Ghosh
- H Bickeböller
- J Bailey
- JE Bailey-Wilson
- R Cantor
- W Daw
- AL DeStefano
- CD Engelman
- A Hinrichs
- J Houwing-Duistermaat
- IR König
- J Kent Jr.
- N Pankratz
- A Paterson
- E Pugh
- Y Sun
- A Thomas
- N Tintle
- X Zhu
- JW MacCluer
- L Almasy
121 articles in this issue
-
-
Genetic Analysis Workshop 17 mini-exome simulation
Authors (first, second and last of 7)
- Laura Almasy
- Thomas D Dyer
- John Blangero
- Content type: Proceedings
- Open Access
- Published: 29 November 2011
- Article: S2
-
Identifying influential regions in extremely rare variants using a fixed-bin approach
Authors (first, second and last of 6)
- Michael Agne
- Chien-Hsun Huang
- Shaw-Hwa Lo
- Content type: Proceedings
- Open Access
- Published: 29 November 2011
- Article: S3
-
Identification of genes and variants associated with quantitative traits using Bayesian factor screening
Authors (first, second and last of 4)
- Kith Pradhan
- Seungtai Chris Yoon
- Kenny Ye
- Content type: Proceedings
- Open Access
- Published: 29 November 2011
- Article: S4
-
Genome-wide association analysis of GAW17 data using an empirical Bayes variable selection
Authors (first, second and last of 5)
- Vitara Pungpapong
- Libo Wang
- Min Zhang
- Content type: Proceedings
- Open Access
- Published: 29 November 2011
- Article: S5
-
A weighted accumulation test for associating rare genetic variation with quantitative phenotypes
Authors
- Chuanhua Xing
- Glen A Satten
- Andrew S Allen
- Content type: Proceedings
- Open Access
- Published: 29 November 2011
- Article: S6
-
A gene-based approach for testing association of rare alleles
Authors
- Hongyan Xu
- Varghese George
- Content type: Proceedings
- Open Access
- Published: 29 November 2011
- Article: S7
-
Population structure analysis using rare and common functional variants
Authors (first, second and last of 6)
- Tesfaye M Baye
- Hua He
- Lisa J Martin
- Content type: Proceedings
- Open Access
- Published: 29 November 2011
- Article: S8
-
Pairwise shared genomic segment analysis in high-risk pedigrees: application to Genetic Analysis Workshop 17 exome-sequencing SNP data
Authors (first, second and last of 4)
- Zheng Cai
- Stacey Knight
- Nicola J Camp
- Content type: Proceedings
- Open Access
- Published: 29 November 2011
- Article: S9
-
Detection of associations with rare and common SNPs for quantitative traits: a nonparametric Bayes-based approach
Authors (first, second and last of 6)
- Lili Ding
- Tesfaye M Baye
- Lisa J Martin
- Content type: Proceedings
- Open Access
- Published: 29 November 2011
- Article: S10
-
Successful identification of rare variants using oligogenic segregation analysis as a prioritizing tool for whole-exome sequencing studies
Authors
- France Gagnon
- Nicole M Roslin
- Mathieu Lemire
- Content type: Proceedings
- Open Access
- Published: 29 November 2011
- Article: S11
-
Evaluation of a LASSO regression approach on the unrelated samples of Genetic Analysis Workshop 17
Authors
- Wei Guo
- Robert C Elston
- Xiaofeng Zhu
- Content type: Proceedings
- Open Access
- Published: 29 November 2011
- Article: S12
-
Identification of functional genetic variation in exome sequence analysis
Authors (first, second and last of 7)
- Andrew Jaffe
- Genevieve Wojcik
- Alison P Klein
- Content type: Proceedings
- Open Access
- Published: 29 November 2011
- Article: S13
-
Comparing nominal and real quality scores on next-generation sequencing genotype calls
Authors
- Alexander H Stram
- Content type: Proceedings
- Open Access
- Published: 29 November 2011
- Article: S14
-
Comparison of results from tests of association in unrelated individuals with uncollapsed and collapsed sequence variants using tiled regression
Authors (first, second and last of 10)
- Heejong Sung
- Yoonhee Kim
- Alexander F Wilson
- Content type: Proceedings
- Open Access
- Published: 29 November 2011
- Article: S15
-
Enhancing the discovery of rare disease variants through hierarchical modeling
Authors
- Gary K Chen
- Content type: Proceedings
- Open Access
- Published: 29 November 2011
- Article: S16
-
Identifying rare disease variants in the Genetic Analysis Workshop 17 simulated data: a comparison of several statistical approaches
Authors (first, second and last of 5)
- Ruixue Fan
- Chien-Hsun Huang
- Iuliana Ionita-Laza
- Content type: Proceedings
- Open Access
- Published: 29 November 2011
- Article: S17
-
Pathway analysis following association study
Authors (first, second and last of 6)
- Julius S Ngwa
- Alisa K Manning
- Anita L DeStefano
- Content type: Proceedings
- Open Access
- Published: 29 November 2011
- Article: S18
-
Gene-based partial least-squares approaches for detecting rare variant associations with complex traits
Authors
- Asuman S Turkmen
- Shili Lin
- Content type: Proceedings
- Open Access
- Published: 29 November 2011
- Article: S19
-
Incorporating predicted functions of nonsynonymous variants into gene-based analysis of exome sequencing data: a comparative study
Authors
- Peng Wei
- Xiaoming Liu
- Yun-Xin Fu
- Content type: Proceedings
- Open Access
- Published: 29 November 2011
- Article: S20
-
Identifying causal rare variants of disease through family-based analysis of Genetics Analysis Workshop 17 data set
Authors (first, second and last of 4)
- Wai-Ki Yip
- Gourab De
- Nan Laird
- Content type: Proceedings
- Open Access
- Published: 29 November 2011
- Article: S21
-
Pathway analysis for family data using nested random-effects models
Authors
- Jeanine J Houwing-Duistermaat
- Hae-Won Uh
- Roula Tsonaka
- Content type: Proceedings
- Open Access
- Published: 29 November 2011
- Article: S22
-
An aggregating U-Test for a genetic association study of quantitative traits
Authors
- Ming Li
- Wenjiang Fu
- Qing Lu
- Content type: Proceedings
- Open Access
- Published: 29 November 2011
- Article: S23
-
LASSO model selection with post-processing for a genome-wide association study data set
Authors (first, second and last of 4)
- Allan J Motyer
- Chris McKendry
- Susan R Wilson
- Content type: Proceedings
- Open Access
- Published: 29 November 2011
- Article: S24
-
Interrogating population structure and its impact on association tests
Authors
- Huaizhen Qin
- Robert C Elston
- Xiaofeng Zhu
- Content type: Proceedings
- Open Access
- Published: 29 November 2011
- Article: S25
-
Testing gene-environment interactions in gene-based association studies
Authors (first, second and last of 5)
- Xuefeng Wang
- Huaizhen Qin
- Robert C Elston
- Content type: Proceedings
- Open Access
- Published: 29 November 2011
- Article: S26
-
Detecting functional rare variants by collapsing and incorporating functional annotation in Genetic Analysis Workshop 17 mini-exome data
Authors (first, second and last of 6)
- Xiting Yan
- Lun Li
- Hongyu Zhao
- Content type: Proceedings
- Open Access
- Published: 29 November 2011
- Article: S27
-
Exploration and comparison of methods for combining population- and family-based genetic association using the Genetic Analysis Workshop 17 mini-exome
Authors (first, second and last of 6)
- David W Fardo
- Anthony R Druen
- Patrick Breheny
- Content type: Proceedings
- Open Access
- Published: 29 November 2011
- Article: S28
-
Use of principal components to aggregate rare variants in case-control and family-based association studies in the presence of multiple covariates
Authors
- Rémi Kazma
- Thomas J Hoffmann
- John S Witte
- Content type: Proceedings
- Open Access
- Published: 29 November 2011
- Article: S29
-
Challenges and directions: an analysis of Genetic Analysis Workshop 17 data by collapsing rare variants within family data
Authors (first, second and last of 5)
- Peng Lin
- Michael Hamm
- John P Rice
- Content type: Proceedings
- Open Access
- Published: 29 November 2011
- Article: S30
-
Identity by descent and association analysis of dichotomous traits based on large pedigrees
Authors
- Tian Liu
- Anbupalam Thalamuthu
- Content type: Proceedings
- Open Access
- Published: 29 November 2011
- Article: S31
-
Comparison of genetic association strategies in the presence of rare alleles
Authors (first, second and last of 6)
- Jestinah M Mahachie John
- Tom Cattaert
- Kristel Van Steen
- Content type: Proceedings
- Open Access
- Published: 29 November 2011
- Article: S32
-
Comparative study of statistical methods for detecting association with rare variants in exome-resequencing data
Authors (first, second and last of 5)
- Mohamad Saad
- Aude Saint Pierre
- Maria Martinez
- Content type: Proceedings
- Open Access
- Published: 29 November 2011
- Article: S33
-
Estimating heritability using family and unrelated individuals data
Authors (first, second and last of 5)
- Priya B Shetty
- Huaizhen Qin
- Xiaofeng Zhu
- Content type: Proceedings
- Open Access
- Published: 29 November 2011
- Article: S34
-
Methods for adjusting population structure and familial relatedness in association test for collective effect of multiple rare variants on quantitative traits
Authors (first, second and last of 5)
- Qunyuan Zhang
- Doyoung Chung
- Michael A Province
- Content type: Proceedings
- Open Access
- Published: 29 November 2011
- Article: S35
-
Family- and population-based designs identify different rare causal variants
Authors (first, second and last of 6)
- Xue Zhang
- Hua He
- Lisa J Martin
- Content type: Proceedings
- Open Access
- Published: 29 November 2011
- Article: S36
-
Use of Bayesian networks to dissect the complexity of genetic disease: application to the Genetic Analysis Workshop 17 simulated data
Authors (first, second and last of 6)
- Jia Kang
- Wei Zheng
- Hongyu Zhao
- Content type: Proceedings
- Open Access
- Published: 29 November 2011
- Article: S37
-
Using the posterior distribution of deviance to measure evidence of association for rare susceptibility variants
Authors (first, second and last of 4)
- Justo Lorenzo-Bermejo
- Lars Beckmann
- Christine Fischer
- Content type: Proceedings
- Open Access
- Published: 29 November 2011
- Article: S38
-
Rare variant density across the genome and across populations
Authors
- Paola Raska
- Xiaofeng Zhu
- Content type: Proceedings
- Open Access
- Published: 29 November 2011
- Article: S39
-
Prioritizing single-nucleotide variations that potentially regulate alternative splicing
Authors (first, second and last of 7)
- Mingxiang Teng
- Yadong Wang
- Yunlong Liu
- Content type: Proceedings
- Open Access
- Published: 29 November 2011
- Article: S40
-
Comparison of SNP-based and gene-based association studies in detecting rare variants using unrelated individuals
Authors (first, second and last of 4)
- Liping Tong
- Bamidele Tayo
- Richard S Cooper
- Content type: Proceedings
- Open Access
- Published: 29 November 2011
- Article: S41
-
Collapsing ROC approach for risk prediction research on both common and rare variants
Authors
- Changshuai Wei
- Qing Lu
- Content type: Proceedings
- Open Access
- Published: 29 November 2011
- Article: S42
-
Region-based and pathway-based QTL mapping using a p-value combination method
Authors
- Hsin-Chou Yang
- Chia-Wei Chen
- Content type: Proceedings
- Open Access
- Published: 29 November 2011
- Article: S43
-
Combining effects from rare and common genetic variants in an exome-wide association study of sequence data
Authors (first, second and last of 6)
- Hugues Aschard
- Weiliang Qiu
- Vincent Carey
- Content type: Proceedings
- Open Access
- Published: 29 November 2011
- Article: S44
-
Pathway-based joint effects analysis of rare genetic variants using Genetic Analysis Workshop 17 exon sequence data
Authors (first, second and last of 5)
- Pingzhao Hu
- Wei Xu
- Andrew D Paterson
- Content type: Proceedings
- Open Access
- Published: 29 November 2011
- Article: S45
-
Large-scale risk prediction applied to Genetic Analysis Workshop 17 mini-exome sequence data
Authors (first, second and last of 9)
- Gengxin Li
- John Ferguson
- Hongyu Zhao
- Content type: Proceedings
- Open Access
- Published: 29 November 2011
- Article: S46
-
Evaluating aggregate effects of rare and common variants in the 1000 Genomes Project exon sequencing data using latent variable structural equation modeling
Authors
- NL Nock
- LX Zhang
- Content type: Proceedings
- Open Access
- Published: 29 November 2011
- Article: S47
-
Evaluating methods for combining rare variant data in pathway-based tests of genetic association
Authors (first, second and last of 6)
- Ashley Petersen
- Alexandra Sitarik
- Nathan L Tintle
- Content type: Proceedings
- Open Access
- Published: 29 November 2011
- Article: S48
-
Comparison of scoring methods for the detection of causal genes with or without rare variants
Authors
- Markus Scholz
- Holger Kirsten
- Content type: Proceedings
- Open Access
- Published: 29 November 2011
- Article: S49
-
New insights into old methods for identifying causal rare variants
Authors (first, second and last of 5)
- Haitian Wang
- Chien-Hsun Huang
- Inchi Hu
- Content type: Proceedings
- Open Access
- Published: 29 November 2011
- Article: S50