Volume 9, issue 1, December 2008
559 articles in this issue
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RPPAML/RIMS: A metadata format and an information management system for reverse phase protein arrays
Authors (first, second and last of 7)
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GeneTrailExpress: a web-based pipeline for the statistical evaluation of microarray experiments
Authors (first, second and last of 8)
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Analysis of plasmid genes by phylogenetic profiling and visualization of homology relationships using Blast2Network
Authors (first, second and last of 6)
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GeneChaser: Identifying all biological and clinical conditions in which genes of interest are differentially expressed
Authors (first, second and last of 5)
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Prediction of regulatory elements in mammalian genomes using chromatin signatures
Authors (first, second and last of 4)
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Corra: Computational framework and tools for LC-MS discovery and targeted mass spectrometry-based proteomics
Authors (first, second and last of 14)
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Enhanced Bayesian modelling in BAPS software for learning genetic structures of populations
Authors (first, second and last of 4)
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Pep-3D-Search: a method for B-cell epitope prediction based on mimotope analysis
Authors (first, second and last of 6)
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A compatible exon-exon junction database for the identification of exon skipping events using tandem mass spectrum data
Authors (first, second and last of 7)
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DISCLOSE : DISsection of CLusters Obtained by SEries of transcriptome data using functional annotations and putative transcription factor binding sites
Authors (first, second and last of 6)
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Fr-TM-align: a new protein structural alignment method based on fragment alignments and the TM-score
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ReplicationDomain: a visualization tool and comparative database for genome-wide replication timing data
Authors (first, second and last of 6)
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The APEX Quantitative Proteomics Tool: Generating protein quantitation estimates from LC-MS/MS proteomics results
Authors (first, second and last of 12)
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Gene Prospector: An evidence gateway for evaluating potential susceptibility genes and interacting risk factors for human diseases
Authors (first, second and last of 5)
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Multi-label literature classification based on the Gene Ontology graph
Authors (first, second and last of 4)
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Empirical methods for controlling false positives and estimating confidence in ChIP-Seq peaks
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Systematic identification of yeast cell cycle transcription factors using multiple data sources
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Global rank-invariant set normalization (GRSN) to reduce systematic distortions in microarray data
Authors (first, second and last of 4)
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Integrated multi-level quality control for proteomic profiling studies using mass spectrometry
Authors (first, second and last of 7)
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Improved machine learning method for analysis of gas phase chemistry of peptides
Authors (first, second and last of 7)
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ElliPro: a new structure-based tool for the prediction of antibody epitopes
Authors (first, second and last of 7)
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Inference of haplotypic phase and missing genotypes in polyploid organisms and variable copy number genomic regions
Authors (first, second and last of 4)
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A Bayesian calibration model for combining different pre-processing methods in Affymetrix chips
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Comparison of methods for estimating the nucleotide substitution matrix
Authors (first, second and last of 6)
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A discriminative method for protein remote homology detection and fold recognition combining Top-n-grams and latent semantic analysis
Authors (first, second and last of 5)
