Volume 51, issue 1, December 2019
79 articles in this issue
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A multivariate analysis with direct additive and inbreeding depression load effects
Authors (first, second and last of 5)
- Luis Varona
- Juan Altarriba
- Joaquim Casellas
- Content type: Research Article
- Open Access
- Published: 26 December 2019
- Article: 78
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A multi-breed reference panel and additional rare variants maximize imputation accuracy in cattle
Authors (first, second and last of 6)
- Troy N. Rowan
- Jesse L. Hoff
- Jared E. Decker
- Content type: Research Article
- Open Access
- Published: 26 December 2019
- Article: 77
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Level-biases in estimated breeding values due to the use of different SNP panels over time in ssGBLUP
Authors (first, second and last of 4)
- Øyvind Nordbø
- Arne B. Gjuvsland
- Theo Meuwissen
- Content type: Research Article
- Open Access
- Published: 16 December 2019
- Article: 76
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Accuracy of genomic BLUP when considering a genomic relationship matrix based on the number of the largest eigenvalues: a simulation study
Authors (first, second and last of 4)
- Ivan Pocrnic
- Daniela A. L. Lourenco
- Ignacy Misztal
- Content type: Research Article
- Open Access
- Published: 12 December 2019
- Article: 75
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The importance of controlled mating in honeybee breeding
Authors (first, second and last of 4)
- Manuel Plate
- Richard Bernstein
- Kaspar Bienefeld
- Content type: Research Article
- Open Access
- Published: 12 December 2019
- Article: 74
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Performance of Hamiltonian Monte Carlo and No-U-Turn Sampler for estimating genetic parameters and breeding values
Authors
- Motohide Nishio
- Aisaku Arakawa
- Content type: Research Article
- Open Access
- Published: 10 December 2019
- Article: 73
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Genomic prediction based on selected variants from imputed whole-genome sequence data in Australian sheep populations
Authors (first, second and last of 9)
- Nasir Moghaddar
- Majid Khansefid
- Iona M. MacLeod
- Content type: Research Article
- Open Access
- Published: 05 December 2019
- Article: 72
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A note on genetic parameters and accuracy of estimated breeding values in honey bees
Authors
- Evert W. Brascamp
- Piter Bijma
- Content type: Research Article
- Open Access
- Published: 27 November 2019
- Article: 71
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Comparative genome analyses reveal the unique genetic composition and selection signals underlying the phenotypic characteristics of three Chinese domestic goat breeds
Authors (first, second and last of 7)
- Jiazhong Guo
- Jie Zhong
- Hongping Zhang
- Content type: Research Article
- Open Access
- Published: 26 November 2019
- Article: 70
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Correction to: Semi-parametric estimates of population accuracy and bias of predictions of breeding values and future phenotypes using the LR method
Authors
- Andres Legarra
- Antonio Reverter
- Content type: Correction
- Open Access
- Published: 22 November 2019
- Article: 69
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Correction to: Use of genomic information to exploit genotype-by-environment interactions for body weight of broiler chicken in bio-secure and production environments
Authors (first, second and last of 7)
- Thinh T. Chu
- John W. M. Bastiaansen
- Just Jensen
- Content type: Correction
- Open Access
- Published: 21 November 2019
- Article: 68
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Genetic parameters and genomic breeding values for digital dermatitis in Holstein Friesian dairy cattle: host susceptibility, infectivity and the basic reproduction ratio
Authors
- Floor Biemans
- Mart C. M. de Jong
- Piter Bijma
- Content type: Research Article
- Open Access
- Published: 20 November 2019
- Article: 67
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GSE’s 50th anniversary: where do we go from now?
Authors
- Genetic Selection Evolution’s Editorial Board
- Content type: Editorial
- Open Access
- Published: 19 November 2019
- Article: 66
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Mapping genomic regions affecting milk traits in Sarda sheep by using the OvineSNP50 Beadchip and principal components to perform combined linkage and linkage disequilibrium analysis
Authors (first, second and last of 8)
- Mario Graziano Usai
- Sara Casu
- Antonello Carta
- Content type: Research Article
- Open Access
- Published: 19 November 2019
- Article: 65
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Optimized grouping to increase accuracy of prediction of breeding values based on group records in genomic selection breeding programs
Authors (first, second and last of 4)
- Thinh T. Chu
- John W. M. Bastiaansen
- Hans Komen
- Content type: Research Article
- Open Access
- Published: 15 November 2019
- Article: 64
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Correction to: Validation of genomic predictions for body weight in broilers using crossbred information and considering breed-of-origin of alleles
Authors (first, second and last of 7)
- Pascal Duenk
- Mario P. L. Calus
- Piter Bijma
- Content type: Correction
- Open Access
- Published: 11 November 2019
- Article: 63
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Genome-wide association analysis reveals QTL and candidate mutations involved in white spotting in cattle
Authors (first, second and last of 15)
- Swati Jivanji
- Gemma Worth
- Mathew D. Littlejohn
- Content type: Research Article
- Open Access
- Published: 08 November 2019
- Article: 62
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Strong selection pressures maintain divergence on genomic islands in Atlantic cod (Gadus morhua L.) populations
Authors (first, second and last of 8)
- Silvia T. RodrÃguez-Ramilo
- Matthew Baranski
- Anna K. Sonesson
- Content type: Research Article
- Open Access
- Published: 29 October 2019
- Article: 61
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Impact of merging commercial breeding lines on the genetic diversity of Landrace pigs
Authors (first, second and last of 6)
- Ina Hulsegge
- Mario Calus
- Kor Oldenbroek
- Content type: Research Article
- Open Access
- Published: 29 October 2019
- Article: 60
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Structure of the intergenic spacers in chicken ribosomal DNA
Authors (first, second and last of 11)
- Alexander Dyomin
- Svetlana Galkina
- Elena Gaginskaya
- Content type: Research Article
- Open Access
- Published: 26 October 2019
- Article: 59
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Using imputation-based whole-genome sequencing data to improve the accuracy of genomic prediction for combined populations in pigs
Authors (first, second and last of 6)
- Hailiang Song
- Shaopan Ye
- Xiangdong Ding
- Content type: Research Article
- Open Access
- Published: 21 October 2019
- Article: 58
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More animals than markers: a study into the application of the single step T-BLUP model in large-scale multi-trait Australian Angus beef cattle genetic evaluation
Authors
- Vinzent Boerner
- David J. Johnston
- Content type: Short communication
- Open Access
- Published: 16 October 2019
- Article: 57
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Genomic relatedness and diversity of Swedish native cattle breeds
Authors (first, second and last of 9)
- Maulik Upadhyay
- Susanne Eriksson
- Anna M. Johansson
- Content type: Research Article
- Open Access
- Published: 02 October 2019
- Article: 56
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SNP-based mate allocation strategies to maximize total genetic value in pigs
Authors (first, second and last of 5)
- David González-Diéguez
- Llibertat Tusell
- Zulma G. Vitezica
- Content type: Research Article
- Open Access
- Published: 27 September 2019
- Article: 55
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Inbreeding depression due to recent and ancient inbreeding in Dutch Holstein–Friesian dairy cattle
Authors (first, second and last of 6)
- Harmen P. Doekes
- Roel F. Veerkamp
- Jack J. Windig
- Content type: Research Article
- Open Access
- Published: 27 September 2019
- Article: 54
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Genetic parameters for body weight and different definitions of residual feed intake in broiler chickens
Authors (first, second and last of 8)
- Wossenie Mebratie
- Per Madsen
- Just Jensen
- Content type: Research Article
- Open Access
- Published: 23 September 2019
- Article: 53
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The impact of genomic selection on genetic diversity and genetic gain in three French dairy cattle breeds
Authors (first, second and last of 8)
- Anna-Charlotte Doublet
- Pascal Croiseau
- Gwendal Restoux
- Content type: Research Article
- Open Access
- Published: 23 September 2019
- Article: 52
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A genome-wide association study explores the genetic determinism of host resistance to Salmonella pullorum infection in chickens
Authors (first, second and last of 12)
- Xinghua Li
- Changsheng Nie
- Lujiang Qu
- Content type: Research Article
- Open Access
- Published: 18 September 2019
- Article: 51
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Use of genomic information to exploit genotype-by-environment interactions for body weight of broiler chicken in bio-secure and production environments
Authors (first, second and last of 7)
- Thinh T. Chu
- John W. M. Bastiaansen
- Just Jensen
- Content type: Research Article
- Open Access
- Published: 18 September 2019
- Article: 50
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Economic optimization of full-sib test group size and genotyping effort in a breeding program for Atlantic salmon
Authors (first, second and last of 4)
- Kasper Janssen
- Helmut W. Saatkamp
- Hans Komen
- Content type: Research Article
- Open Access
- Published: 03 September 2019
- Article: 49
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Integrating genome-wide co-association and gene expression to identify putative regulators and predictors of feed efficiency in pigs
Authors (first, second and last of 7)
- Yuliaxis Ramayo-Caldas
- Emilio Mármol-Sánchez
- Raquel Quintanilla
- Content type: Research Article
- Open Access
- Published: 02 September 2019
- Article: 48
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Genome-wide association analysis and accuracy of genome-enabled breeding value predictions for resistance to infectious hematopoietic necrosis virus in a commercial rainbow trout breeding population
Authors (first, second and last of 8)
- Roger L. Vallejo
- Hao Cheng
- Yniv Palti
- Content type: Research Article
- Open Access
- Published: 28 August 2019
- Article: 47
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Muscle glycogen level and occurrence of acid meat in commercial hybrid pigs are regulated by two low-frequency causal variants with large effects and multiple common variants with small effects
Authors (first, second and last of 11)
- Xianxian Liu
- Lisheng Zhou
- Lusheng Huang
- Content type: Research Article
- Open Access
- Published: 23 August 2019
- Article: 46
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A bivariate genomic model with additive, dominance and inbreeding depression effects for sire line and three-way crossbred pigs
Authors (first, second and last of 8)
- Ole F. Christensen
- Bjarne Nielsen
- Anders B. Strathe
- Content type: Research Article
- Open Access
- Published: 19 August 2019
- Article: 45
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Genotyping by low-coverage whole-genome sequencing in intercross pedigrees from outbred founders: a cost-efficient approach
Authors (first, second and last of 6)
- Yanjun Zan
- Thibaut Payen
- Örjan Carlborg
- Content type: Research Article
- Open Access
- Published: 14 August 2019
- Article: 44
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Genetic parameters for first lactation dairy traits in the Alpine and Saanen goat breeds using a random regression test-day model
Authors (first, second and last of 5)
- Mathieu Arnal
- Hélène Larroque
- Christèle Robert-Granié
- Content type: Research Article
- Open Access
- Published: 13 August 2019
- Article: 43
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Whole-genome mapping of quantitative trait loci and accuracy of genomic predictions for resistance to columnaris disease in two rainbow trout breeding populations
Authors (first, second and last of 8)
- Rafael M. O. Silva
- Jason P. Evenhuis
- Daniela A. L. Lourenco
- Content type: Research Article
- Open Access
- Published: 06 August 2019
- Article: 42
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Across-sex genomic-assisted genetic correlations for sex-influenced traits in Brahman cattle
Authors
- Fernanda S. S. Raidan
- Laercio R. Porto-Neto
- Antonio Reverter
- Content type: Research Article
- Open Access
- Published: 23 July 2019
- Article: 41
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Genetic benefits of genomic selection breeding programmes considering foreign sire contributions
Authors (first, second and last of 5)
- Daragh Matthews
- John F. Kearney
- Peter R. Amer
- Content type: Research Article
- Open Access
- Published: 16 July 2019
- Article: 40
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Pedigree relationships to control inbreeding in optimum-contribution selection realise more genetic gain than genomic relationships
Authors (first, second and last of 7)
- Mark Henryon
- Huiming Liu
- A. Christian Sørensen
- Content type: Research Article
- Open Access
- Published: 08 July 2019
- Article: 39
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Validation of genomic predictions for body weight in broilers using crossbred information and considering breed-of-origin of alleles
Authors (first, second and last of 7)
- Pascal Duenk
- Mario P. L. Calus
- Piter Bijma
- Content type: Research Article
- Open Access
- Published: 08 July 2019
- Article: 38
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Detection of genomic regions underlying resistance to gastrointestinal parasites in Australian sheep
Authors (first, second and last of 5)
- Mohammad Al Kalaldeh
- John Gibson
- Julius H. J. van der Werf
- Content type: Research Article
- Open Access
- Published: 03 July 2019
- Article: 37
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Management of lethal recessive alleles in beef cattle through the use of mate selection software
Authors (first, second and last of 4)
- Lindsay R. Upperman
- Brian P. Kinghorn
- Alison L. Van Eenennaam
- Content type: Research Article
- Open Access
- Published: 06 August 2019
- Article: 36
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Genetic variability and history of a native Finnish horse breed
Authors (first, second and last of 5)
- Laura Kvist
- Markku Niskanen
- Jouni Aspi
- Content type: Research Article
- Open Access
- Published: 01 July 2019
- Article: 35
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Sequence-based GWAS, network and pathway analyses reveal genes co-associated with milk cheese-making properties and milk composition in Montbéliarde cows
Authors (first, second and last of 12)
- Marie-Pierre Sanchez
- Yuliaxis Ramayo-Caldas
- Didier Boichard
- Content type: Research Article
- Open Access
- Published: 01 July 2019
- Article: 34
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Family-specific genotype arrays increase the accuracy of pedigree-based imputation at very low marker densities
Authors
- Andrew Whalen
- Gregor Gorjanc
- John M. Hickey
- Content type: Research Article
- Open Access
- Published: 26 June 2019
- Article: 33
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Using imputed whole-genome sequence data to improve the accuracy of genomic prediction for parasite resistance in Australian sheep
Authors (first, second and last of 8)
- Mohammad Al Kalaldeh
- John Gibson
- Julius H. J. van der Werf
- Content type: Research Article
- Open Access
- Published: 26 June 2019
- Article: 32
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Genetic analysis of production, physiological, and egg quality traits in heat-challenged commercial white egg-laying hens using 600k SNP array data
Authors (first, second and last of 6)
- Kaylee Rowland
- Chris M. Ashwell
- Susan J. Lamont
- Content type: Research Article
- Open Access
- Published: 25 June 2019
- Article: 31
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A second-level diagonal preconditioner for single-step SNPBLUP
Authors (first, second and last of 4)
- Jeremie Vandenplas
- Mario P. L. Calus
- Cornelis Vuik
- Content type: Research Article
- Open Access
- Published: 25 June 2019
- Article: 30