Volume 49, issue 1, December 2017
95 articles in this issue
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Variable selection models for genomic selection using whole-genome sequence data and singular value decomposition
Authors
- Theo H. E. Meuwissen
- Ulf G. Indahl
- Jørgen Ødegård
- Content type: Research Article
- Open Access
- Published: 27 December 2017
- Article: 94
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Correction to: Genomic evaluation for a three-way crossbreeding system considering breed-of-origin of alleles
Authors (first, second and last of 5)
- Claudia A. Sevillano
- Jeremie Vandenplas
- Mario P. L. Calus
- Content type: Correction
- Open Access
- Published: 27 December 2017
- Article: 93
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Age-based partitioning of individual genomic inbreeding levels in Belgian Blue cattle
Authors (first, second and last of 7)
- Marina Solé
- Ann-Stephan Gori
- Tom Druet
- Content type: Research Article
- Open Access
- Published: 22 December 2017
- Article: 92
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ShinyGPAS: interactive genomic prediction accuracy simulator based on deterministic formulas
Authors
- Gota Morota
- Content type: Software
- Open Access
- Published: 20 December 2017
- Article: 91
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Use and optimization of different sources of information for genomic prediction
Authors (first, second and last of 4)
- Joanna J. Ilska
- Theo H. E. Meuwissen
- John A. Woolliams
- Content type: Research Article
- Open Access
- Published: 11 December 2017
- Article: 90
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Modeling heterogeneous (co)variances from adjacent-SNP groups improves genomic prediction for milk protein composition traits
Authors (first, second and last of 6)
- Grum Gebreyesus
- Mogens S. Lund
- Luc G. Janss
- Content type: Research Article
- Open Access
- Published: 05 December 2017
- Article: 89
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Accuracies of univariate and multivariate genomic prediction models in African cassava
Authors (first, second and last of 5)
- Uche Godfrey Okeke
- Deniz Akdemir
- Jean-Luc Jannink
- Content type: Research Article
- Open Access
- Published: 04 December 2017
- Article: 88
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A fast indirect method to compute functions of genomic relationships concerning genotyped and ungenotyped individuals, for diversity management
Authors (first, second and last of 4)
- Jean-Jacques Colleau
- Isabelle Palhière
- Andres Legarra
- Content type: Research article
- Open Access
- Published: 01 December 2017
- Article: 87
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Genetic parameters and expected responses to selection for components of feed efficiency in a Duroc pig line
Authors (first, second and last of 5)
- Juan P. Sánchez
- Mohamed Ragab
- Miriam Piles
- Content type: Research Article
- Open Access
- Published: 01 December 2017
- Article: 86
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A missense variant in the coil1A domain of the keratin 25 gene is associated with the dominant curly hair coat trait (Crd) in horse
Authors (first, second and last of 11)
- Caroline Morgenthaler
- Mathieu Diribarne
- Gus Cothran
- Content type: Research Article
- Open Access
- Published: 15 November 2017
- Article: 85
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Genome-wide scan for runs of homozygosity identifies potential candidate genes associated with local adaptation in Valle del Belice sheep
Authors (first, second and last of 7)
- Salvatore Mastrangelo
- Marco Tolone
- Baldassare Portolano
- Content type: Research article
- Open Access
- Published: 14 November 2017
- Article: 84
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Population structure and genomic inbreeding in nine Swiss dairy cattle populations
Authors (first, second and last of 9)
- Heidi Signer-Hasler
- Alexander Burren
- Christine Flury
- Content type: Research Article
- Open Access
- Published: 07 November 2017
- Article: 83
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Genome-wide association studies and genomic prediction of breeding values for calving performance and body conformation traits in Holstein cattle
Authors (first, second and last of 10)
- Mohammed K. Abo-Ismail
- Luiz F. Brito
- Flavio S. Schenkel
- Content type: Research Article
- Open Access
- Published: 07 November 2017
- Article: 82
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High-resolution analysis of selection sweeps identified between fine-wool Merino and coarse-wool Churra sheep breeds
Authors (first, second and last of 6)
- Beatriz Gutiérrez-Gil
- Cristina Esteban-Blanco
- Juan-Jose Arranz
- Content type: Research Article
- Open Access
- Published: 07 November 2017
- Article: 81
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Multivariate random regression analysis for body weight and main morphological traits in genetically improved farmed tilapia (Oreochromis niloticus)
Authors (first, second and last of 7)
- Jie He
- Yunfeng Zhao
- Runqing Yang
- Content type: Research Article
- Open Access
- Published: 02 November 2017
- Article: 80
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Estimated allele substitution effects underlying genomic evaluation models depend on the scaling of allele counts
Authors
- Aniek C. Bouwman
- Ben J. Hayes
- Mario P. L. Calus
- Content type: Research Article
- Open Access
- Published: 30 October 2017
- Article: 79
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A method for allocating low-coverage sequencing resources by targeting haplotypes rather than individuals
Authors (first, second and last of 4)
- Roger Ros-Freixedes
- Serap Gonen
- John M. Hickey
- Content type: Research Article
- Open Access
- Published: 25 October 2017
- Article: 78
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Identification of copy number variation in French dairy and beef breeds using next-generation sequencing
Authors (first, second and last of 14)
- Rabia Letaief
- Emmanuelle Rebours
- Mekki Boussaha
- Content type: Research Article
- Open Access
- Published: 24 October 2017
- Article: 77
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Using a very low-density SNP panel for genomic selection in a breeding program for sheep
Authors
- Jérôme Raoul
- Andrew A. Swan
- Jean-Michel Elsen
- Content type: Research Article
- Open Access
- Published: 24 October 2017
- Article: 76
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Genomic evaluation for a three-way crossbreeding system considering breed-of-origin of alleles
Authors (first, second and last of 5)
- Claudia A. Sevillano
- Jeremie Vandenplas
- Mario P. L. Calus
- Content type: Research Article
- Open Access
- Published: 23 October 2017
- Article: 75
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Locally epistatic models for genome-wide prediction and association by importance sampling
Authors
- Deniz Akdemir
- Jean-Luc Jannink
- Julio Isidro-Sánchez
- Content type: Research article
- Open Access
- Published: 17 October 2017
- Article: 74
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Detection of two non-synonymous SNPs in SLC45A2 on BTA20 as candidate causal mutations for oculocutaneous albinism in Braunvieh cattle
Authors (first, second and last of 8)
- Sophie Rothammer
- Elisabeth Kunz
- Ivica Medugorac
- Content type: Short communication
- Open Access
- Published: 05 October 2017
- Article: 73
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The genetic basis of novel water utilisation and drinking behaviour traits and their relationship with biological performance in turkeys
Authors (first, second and last of 5)
- Julija Rusakovica
- Valentin D. Kremer
- Ilias Kyriazakis
- Content type: Research Article
- Open Access
- Published: 29 September 2017
- Article: 72
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Genome-wide SNP data unveils the globalization of domesticated pigs
Authors (first, second and last of 22)
- Bin Yang
- Leilei Cui
- Hendrik-Jan Megens
- Content type: Research Article
- Open Access
- Published: 21 September 2017
- Article: 71
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Multi-breed genomic prediction using Bayes R with sequence data and dropping variants with a small effect
Authors (first, second and last of 7)
- Irene van den Berg
- Phil J. Bowman
- Mike E. Goddard
- Content type: Research Article
- Open Access
- Published: 21 September 2017
- Article: 70
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Transcriptional profile of breast muscle in heat stressed layers is similar to that of broiler chickens at control temperature
Authors
- Imran Zahoor
- Dirk-Jan de Koning
- Paul M. Hocking
- Content type: Research Article
- Open Access
- Published: 20 September 2017
- Article: 69
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Within-breed and multi-breed GWAS on imputed whole-genome sequence variants reveal candidate mutations affecting milk protein composition in dairy cattle
Authors (first, second and last of 13)
- Marie-Pierre Sanchez
- Armelle Govignon-Gion
- Didier Boichard
- Content type: Research Article
- Open Access
- Published: 18 September 2017
- Article: 68
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Genetic tests for estimating dairy breed proportion and parentage assignment in East African crossbred cattle
Authors (first, second and last of 6)
- Eva M. Strucken
- Hawlader A. Al-Mamun
- John P. Gibson
- Content type: Research Article
- Open Access
- Published: 12 September 2017
- Article: 67
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Influence of epistasis on response to genomic selection using complete sequence data
Authors (first, second and last of 4)
- Natalia S. Forneris
- Zulma G. Vitezica
- Miguel Pérez-Enciso
- Content type: Research Article
- Open Access
- Published: 25 August 2017
- Article: 66
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Erratum to: Incorporation of causative quantitative trait nucleotides in single-step GBLUP
Authors (first, second and last of 5)
- Breno O. Fragomeni
- Daniela A. L. Lourenco
- Ignacy Misztal
- Content type: Erratum
- Open Access
- Published: 24 August 2017
- Article: 65
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An efficient unified model for genome-wide association studies and genomic selection
Authors (first, second and last of 4)
- Hengde Li
- Guosheng Su
- Zhenmin Bao
- Content type: Research Article
- Open Access
- Published: 24 August 2017
- Article: 64
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Simultaneous fitting of genomic-BLUP and Bayes-C components in a genomic prediction model
Authors (first, second and last of 5)
- Oscar O. M. Iheshiulor
- John A. Woolliams
- Theo H. E. Meuwissen
- Content type: Research Article
- Open Access
- Published: 24 August 2017
- Article: 63
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Multiple-trait QTL mapping and genomic prediction for wool traits in sheep
Authors (first, second and last of 8)
- Sunduimijid Bolormaa
- Andrew A. Swan
- Hans D. Daetwyler
- Content type: Research Article
- Open Access
- Published: 15 August 2017
- Article: 62
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Genetic assessment of residual feed intake as a feed efficiency trait in the Pacific white shrimp Litopenaeus vannamei
Authors (first, second and last of 7)
- Ping Dai
- Sheng Luan
- Jie Kong
- Content type: Research Article
- Open Access
- Published: 04 August 2017
- Article: 61
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Contribution of rare and low-frequency whole-genome sequence variants to complex traits variation in dairy cattle
Authors (first, second and last of 5)
- Qianqian Zhang
- Mario P. L. Calus
- Goutam Sahana
- Content type: Research Article
- Open Access
- Published: 01 August 2017
- Article: 60
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Incorporation of causative quantitative trait nucleotides in single-step GBLUP
Authors (first, second and last of 5)
- Breno O. Fragomeni
- Daniela A. L. Lourenco
- Ignacy Misztal
- Content type: Research Article
- Open Access
- Published: 26 July 2017
- Article: 59
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Interaction of direct and social genetic effects with feeding regime in growing rabbits
Authors (first, second and last of 8)
- Miriam Piles
- Ingrid David
- Juan P. Sánchez
- Content type: Research Article
- Open Access
- Published: 20 July 2017
- Article: 58
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Use of haplotypes to identify regions harbouring lethal recessive variants in pigs
Authors (first, second and last of 4)
- David M. Howard
- Ricardo Pong-Wong
- John A. Woolliams
- Content type: Research Article
- Open Access
- Published: 14 July 2017
- Article: 57
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Putative enhancer sites in the bovine genome are enriched with variants affecting complex traits
Authors (first, second and last of 6)
- Min Wang
- Timothy P. Hancock
- Benjamin J. Hayes
- Content type: Research Article
- Open Access
- Published: 06 July 2017
- Article: 56
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The potential of shifting recombination hotspots to increase genetic gain in livestock breeding
Authors (first, second and last of 5)
- Serap Gonen
- Mara Battagin
- John M. Hickey
- Content type: Research Article
- Open Access
- Published: 04 July 2017
- Article: 55
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Fixed-length haplotypes can improve genomic prediction accuracy in an admixed dairy cattle population
Authors (first, second and last of 4)
- Melanie Hess
- Tom Druet
- Dorian Garrick
- Content type: Research Article
- Open Access
- Published: 03 July 2017
- Article: 54
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A model to estimate effects of SNPs on host susceptibility and infectivity for an endemic infectious disease
Authors
- Floor Biemans
- Mart C. M. de Jong
- Piter Bijma
- Content type: Research Article
- Open Access
- Published: 30 June 2017
- Article: 53
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Analysis of the genetic variation in mitochondrial DNA, Y-chromosome sequences, and MC1R sheds light on the ancestry of Nigerian indigenous pigs
Authors (first, second and last of 15)
- Adeniyi C. Adeola
- Olufunke O. Oluwole
- Ya-Ping Zhang
- Content type: Short communication
- Open Access
- Published: 26 June 2017
- Article: 52
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Genomic selection for crossbred performance accounting for breed-specific effects
Authors (first, second and last of 6)
- Marcos S. Lopes
- Henk Bovenhuis
- John W. M. Bastiaansen
- Content type: Research Article
- Open Access
- Published: 26 June 2017
- Article: 51
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On marker-based parentage verification via non-linear optimization
Authors
- Vinzent Boerner
- Content type: Research Article
- Open Access
- Published: 15 June 2017
- Article: 50
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Tag SNP selection for prediction of tick resistance in Brazilian Braford and Hereford cattle breeds using Bayesian methods
Authors (first, second and last of 5)
- Bruna P. Sollero
- Vinícius S. Junqueira
- Fernando F. Cardoso
- Content type: Research Article
- Open Access
- Published: 15 June 2017
- Article: 49
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Selection for environmental variance of litter size in rabbits
Authors (first, second and last of 5)
- Agustín Blasco
- Marina Martínez-Álvaro
- María-José Argente
- Content type: Research Article
- Open Access
- Published: 22 May 2017
- Article: 48
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A method for the allocation of sequencing resources in genotyped livestock populations
Authors (first, second and last of 5)
- Serap Gonen
- Roger Ros-Freixedes
- John M. Hickey
- Content type: Research Article
- Open Access
- Published: 18 May 2017
- Article: 47
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A strategy to improve phasing of whole-genome sequenced individuals through integration of familial information from dense genotype panels
Authors
- Pierre Faux
- Tom Druet
- Content type: Research Article
- Open Access
- Published: 16 May 2017
- Article: 46