1. Editorial: Methods in Functional Genomics

   • Paola Sebastiani
   • Isaac S. Kohane
   • Marco F. Ramoni

   Editorial Board Pages: 5 - 9

2. Relation Between Permutation-Test P Values and Classifier Error Estimates

   • Tailen Hsing
   • Sanju Attoor
   • Edward Dougherty

   OriginalPaper Pages: 11 - 30

3. Boosting and Microarray Data

   • Philip M. Long
   • Vinsensius Berlian Vega

   OriginalPaper Pages: 31 - 44

4. Analysis and Visualization of Gene Expression Microarray Data in Human Cancer Using Self-Organizing Maps

   • Sampsa Hautaniemi
   • Olli Yli-Harja
   • Olli-P. Kallioniemi

   OriginalPaper Pages: 45 - 66

5. Self-Organizing Latent Lattice Models for Temporal Gene Expression Profiling

   • Zhang Byoung-Tak
   • Jinsan Yang
   • Sung Wook Chi

   OriginalPaper Pages: 67 - 89

6. Consensus Clustering: A Resampling-Based Method for Class Discovery and Visualization of Gene Expression Microarray Data

   • Stefano Monti
   • Pablo Tamayo
   • Todd Golub

   OriginalPaper Pages: 91 - 118

7. Inclusion of Textual Documentation in the Analysis of Multidimensional Data Sets: Application to Gene Expression Data

   • Soumya Raychaudhuri
   • Hinrich Schütze
   • Russ B. Altman

   OriginalPaper Pages: 119 - 145

8. On Learning Gene Regulatory Networks Under the Boolean Network Model

   • Harri Lähdesmäki
   • Ilya Shmulevich
   • Olli Yli-Harja

   OriginalPaper Pages: 147 - 167

9. External Control in Markovian Genetic Regulatory Networks

   • Aniruddha Datta
   • Ashish Choudhary
   • Edward R. Dougherty

   OriginalPaper Pages: 169 - 191