1. Web application for studying the free energy of binding and protonation states of protein–ligand complexes based on HINT

   • Alexander S. Bayden
   • Micaela Fornabaio
   • Glen E. Kellogg

   OriginalPaper 25 June 2009 Pages: 621 - 632

   

2. Robust optimization of scoring functions for a target class

   • Markus H. J. Seifert

   OriginalPaper 27 May 2009 Pages: 633 - 644

   

3. Empirical estimation of the energetic contribution of individual interface residues in structures of protein–protein complexes

   • Mainak Guharoy
   • Pinak Chakrabarti

   OriginalPaper 29 May 2009 Pages: 645 - 654

   

4. Analysis and use of fragment-occurrence data in similarity-based virtual screening

   • Shereena M. Arif
   • John D. Holliday
   • Peter Willett

   OriginalPaper 18 June 2009 Pages: 655 - 668

   

5. OpenCDLig: a free web application for sharing resources about cyclodextrin/ligand complexes

   • Roberto Esposito
   • Giuseppe Ermondi
   • Giulia Caron

   OriginalPaper 17 June 2009 Pages: 669 - 675

   

6. Modeling of peptides containing D-amino acids: implications on cyclization

   • Austin B. Yongye
   • Yangmei Li
   • Karina Martínez-Mayorga

   OriginalPaper 11 July 2009 Pages: 677 - 689