Abstract
Introduction
The CCCTC-binding factor (CTCF), known as a versatile transcription factor and chromatin insulator and to be involved in X inactivation, has also been suggested to be a tumour suppressor on 16q. We investigated 153 patients with familial non-BRCA1/BRCA2 breast cancer for germline mutations in the CTCF gene.
Methods
Mutation screening of CTCF was performed by denaturing high-performance liquid chromatography followed by cycle sequencing.
Results
We found two sequence variants, 240G→A in the 5' untranslated region and 1455C→T (S388S) in exon 4, in five familial breast cancer cases. Three of these five cases had both variants. Cases and controls showed the same prevalence for the two variants, which were found in linkage disequilibrium in most cases and controls.
Conclusion
The present study suggests that germline mutations in CTCF are not important as a risk factor for breast cancer.
Similar content being viewed by others
Abbreviations
- CTCF:
-
CCCTC-binding factor
- DHPLC:
-
denaturing high-performance liquid chromatography
- LOH:
-
loss of heterozygosity
- RT–PCR:
-
reverse transcriptase–polymerase chain reaction.
References
Ohlsson R, Renkawitz R, Lobanenkov V: CTCF is a uniquely versatile transcription regulator linked to epigenetics and disease. Trends Genet. 2001, 17: 520-527. 10.1016/S0168-9525(01)02366-6.
Cleton-Jansen AM, Moerland EW, Kuipers-Dijkshoorn NJ, Callen DF, Sutherland GR, Hansen B, Devilee P, Cornelisse CJ: At least two different regions are involved in allelic imbalance on chromosome arm 16q in breast cancer. Genes Chromosomes Cancer. 1994, 9: 101-107.
Dorion-Bonnet F, Mautalen S, Hostein I, Longy M: Allelic imbalance study of 16q in human primary breast carcinomas using microsatellite markers. Genes Chromosomes Cancer. 1995, 14: 171-181.
Lindblom A, Rotstein S, Skoog L, Nordenskjold M, Larsson C: Deletions on chromosome 16 in primary familial breast carcinomas are associated with development of distant metastases. Cancer Res. 1993, 53: 3707-3711.
Caligo MA, Polidoro L, Ghimenti C, Campani D, Cecchetti D, Bevilacqua G: A region on the long arm of chromosome 16 is frequently deleted in metastatic node-negative breast cancer. Int J Oncol. 1998, 13: 177-182.
Hansen LL, Yilmaz M, Overgaard J, Andersen J, Kruse TA: Allelic loss of 16q23.2–24.2 is an independent marker of good prognosis in primary breast cancer. Cancer Res. 1998, 58: 2166-2169.
Filippova GN, Lindblom A, Meincke LJ, Klenova EM, Neiman PE, Collins SJ, Doggett NA, Lobanenkov VV: A widely expressed transcription factor with multiple DNA sequence specificity, CTCF, is localized at chromosome segment 16q22.1 within one of the smallest regions of overlap for common deletions in breast and prostate cancers. Genes Chromosomes Cancer. 1998, 22: 26-36. 10.1002/(SICI)1098-2264(199805)22:1<26::AID-GCC4>3.3.CO;2-W.
Filippova GN, Qi CF, Ulmer JE, Moore JM, Ward MD, Hu YJ, Loukinov DI, Pugacheva EM, Klenova EM, Grundy PE, et al: Tumor-associated zinc finger mutations in the CTCF transcription factor selectively alter tts DNA-binding specificity. Cancer Res. 2002, 62: 48-52.
Van den Veyver IB: Skewed X inactivation in X-linked disorders. Semin Reprod Med. 2001, 19: 183-191. 10.1055/s-2001-15398.
Buller RE, Sood AK, Lallas T, Buekers T, Skilling JS: Association between nonrandom X-chromosome inactivation and BRCA1 mutation in germline DNA of patients with ovarian cancer. J Natl Cancer Inst. 1999, 91: 339-346. 10.1093/jnci/91.4.339.
Kristiansen M, Langerod A, Knudsen GP, Weber BL, Borresen-Dale AL, Orstavik KH: High frequency of skewed X inactivation in young breast cancer patients. J Med Genet. 2002, 39: 30-33. 10.1136/jmg.39.1.30.
Chao W, Huynh KD, Spencer RJ, Davidow LS, Lee JT: CTCF, a candidate trans-acting factor for X-inactivation choice. Science. 2002, 295: 345-347. 10.1126/science.1065982.
Lindblom A, Skoog L, Rotstein S, Werelius B, Larsson C, Nordenskjold M: Loss of heterozygosity in familial breast carcinomas. Cancer Res. 1993, 53: 4356-4361.
Salahshor S, Haixin L, Huo H, Kristensen VN, Loman N, Sjoberg-Margolin S, Borg A, Borresen-Dale AL, Vorechovsky I, Lindblom A: Low frequency of E-cadherin alterations in familial breast cancer. Breast Cancer Res. 2001, 3: 199-207. 10.1186/bcr295.
Arver B, Borg A, Lindblom A: First BRCA1 and BRCA2 gene testing implemented in the health care system of Stockholm. Genet Test. 2001, 5: 1-8. 10.1089/109065701750168581.
Chen J, Hedman MZ, Arver BW, Sigurdsson S, Eyfjord JE, Lindblom A: BRCA2 germline mutations in Swedish breast cancer families. Eur J Hum Genet. 1998, 6: 134-139. 10.1038/sj.ejhg.5200167.
Aulmann S, Blaker H, Penzel R, Rieker RJ, Otto HF, Sinn HP: CTCF gene mutations in invasive ductal breast cancer. Breast Cancer Res Treat. 2003, 80: 347-352. 10.1023/A:1024930404629.
Cui H, Niemitz EL, Ravenel JD, Onyango P, Brandenburg SA, Lobanenkov VV, Feinberg AP: Loss of imprinting of insulin-like growth factor-II in Wilms' tumor commonly involves altered methylation but not mutations of CTCF or its binding site. Cancer Res. 2001, 61: 4947-4950.
Nakagawa H, Chadwick RB, Peltomaki P, Plass C, Nakamura Y, de La Chapelle A: Loss of imprinting of the insulin-like growth factor II gene occurs by biallelic methylation in a core region of H19-associated CTCF-binding sites in colorectal cancer. Proc Natl Acad Sci USA. 2001, 98: 591-596. 10.1073/pnas.011528698.
Acknowledgements
We thank the families for their cooperation, and Victor Lobanenkov for valuable discussions. The study was financed by the Swedish Cancer Society, the Stockholm Cancer Society and the Gustav V Jubilee Foundation.
Author information
Authors and Affiliations
Corresponding author
Additional information
Competing interests
None declared.
Rights and permissions
About this article
Cite this article
Zhou, XL., Werelius, B. & Lindblom, A. A screen for germline mutations in the gene encoding CCCTC-binding factor (CTCF) in familial non-BRCA1/BRCA2 breast cancer. Breast Cancer Res 6, R187 (2004). https://doi.org/10.1186/bcr774
Received:
Revised:
Accepted:
Published:
DOI: https://doi.org/10.1186/bcr774