Abstract
Five loci (Phz2, Phz6, Phz7, Phz12, and Phz14) of microsatellite DNA markers developed in a previous study for parentage assignment in the hatchery population generated by mating among 61 broodstock fish (35 females and 26 males) in a spawning tank, were selected. After natural spawning in the same tank, larvae collected at three different times were categorized into early phase (EP), middle phase (MP), and late phase (LP) groups. In the parental broodstock, the mean number of alleles per locus was 21.8 and expected heterozygosity (H E) was 0.813. In the progeny, the mean number of alleles per locus decreased to 11.6 (EP), 14.4 (MP), and 6.4 (LP) and H E to 0.796 (EP), 0.833 (MP), and 0.681 (LP). Parental assignment determined eight dams and six sires as major parents for the EP group. In the MP group, 13 dams and ten sires genetically contributed to spawning, but only three dams and two sires were involved in LP group progeny. In the hatchery population produced from a limited number of parental fish such as the LP group, genetic variability was apparently decreased.
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Liu ZJ, Cordes JF. DNA marker technologies and their applications in aquaculture genetics. Aquaculture 2004; 238: 1–37.
Dunham RA. Biochemical and molecular markers: microsatellites. In: Dunham RA (ed.): Aquaculture and Fisheries Biotechnology: Genetic Approaches. CABI Publishing, London. 2004; 97–99.
O’Connell M, Wright JM. Microsatellite DNA in fishes. Rev. Fish. Biol. Fish. 1997; 7: 331–363.
Wenburg JK, Bentzen P, Foote CJ. Microsatellite analysis of genetic population structure in an endangered salmonid: the coastal cutthroat trout (Oncorhynchus clarki clarki). Mol. Ecol. 1998; 7: 733–749.
Hoarau G, Piquet AM-T, van der Veer HW, Fijnsdorp AD, Stam WT, Olsen JL. Population structure of plaice (Pleuronectes platessa L.) in northern Europe: a comparison of resolving power between microsatellites and mitochondrial DNA data. J. Sea Res. 2004; 51: 183–190.
Lundrigan TA, Reist JD, Ferguson MM. Microsatellite genetic variation within and among Arctic charr (Salvelinus alpinus) from aquaculture and natural population in North America. Aquaculture 2005; 244: 63–75.
Estoup A, Gharbi K, SanCristobal M, Chevalet C, Haffray P, Guyomard R. Parentage assignment using microsatellites in turbot (Scophthalmus maximus) and rainbow trout (Oncorhynchus mykiss) hatchery populations. Can. J. Fish. Aquat. Sci. 1998; 55: 715–725.
Selvamani MJP, Degnan SM, Degnan BM. Microsatellite genotyping of individual abalone larvae: parentage assignment in aquaculture. Mar. Biotechnol. 2001; 3: 478–485.
Hara M, Sekino M. Efficient detection of parentage in cultured Japanese flounder Paralichthys olivaceus using microsatellite DNA marker. Aquaculture 2003; 217: 107–114.
Castro J, Bouza C, Presa P, Pino-Querido A, Riaza A, Ferreiro I, Sánchez L, Martínez P. Potential sources of error in parentage assessment of turbot (Scophthalmus maximus) using microsatellite loci. Aquaculture 2004; 242: 119–135.
Jerry DR, Preston NP, Crocos PJ, Keys S, Meadows JRS, Li Y. Parentage determination of Kuruma shrimp Penaeus (Marsupenacus) japonicus using microsatellite markers (Bate). Aquaculture 2004; 235: 237–247.
Sekino M, Saitoh K, Yamada T, Hara M, Yamashita Y. Genetic tagging of released Japanese flounder (Paralichthys olivaceus) based on polymorphic DNA markers. Aquaculture 2005; 244: 49–61.
Perez-Enriquez R, Takagi M, Taniguchi N. Genetic variability and pedigree tracing of a hatchery-reared stock of red sea bream (Pagrus major) used for stock enhancement, based on microsatellite DNA markers. Aquaculture 1999; 173: 413–423.
Jackson TR, Martin-Robichaud DJ, Reith ME. Application of DNA markers to the management of Atlantic halibut (Hippoglossus hippoglossus) broodstock. Aquaculture 2003; 220: 245–259.
Jeong D-S, Umino T, Kuroda K, Hayashi M, Nakagawa H, Kang J-C, Morishima K, Arai K. Genetic divergence and population structure of black sea bream Acanthopagrus schlegeli inferred from microsatellite analysis. Fish. Sci. 2003; 69: 896–902.
Borrell YJ, Alvarez J, Vazquez E, Pato CF, Tapia CM, Sanchez JA, Blanco G. Applying microsatellites to the management of farmed turbot stocks (Scophthalmus maximus L.) in hatcheries. Aquaculture 2004; 241: 133–150.
Sekino M, Sugaya T, Hara M, Taniguchi N. Relatedness inferred from microsatellite genotypes as a tool for broodstock management of Japanese flounder Paralichthysolivaceus. Aquaculture 2004; 233: 163–172.
Ortega-Villaizan Romo M, Suzuki S, Nakajima M, Taniguchi N. Genetic evaluation of interindividual relatedness for broodstock management of the rare species barfin flounder Verasper moseri using microsatellite DNA markers. Fish. Sci. 2006; 72: 33–39.
Satoh N, Fujioka T, Shimizu Y. Ingestion of live food by the larvae of brown sole Pleuronectes herzensteini at different temperatures in the Hokkaido region. Sci. Rep. Hokkaido Fish. Exp. Stn. 2003; 64: 113–120.
Satoh N, Sugimoto T. Effects of feeding intervals on the growth of the juveniles of brown sole Pleuronectes herzensteini. Sci. Rep. Hokkaido Fish. Exp. Stn. 2004; 66: 1–5.
Kim SG, Morishima K, Arai K. Isolation and Characterization of polymorphic microsatellite DNA markers in the brown sole, Pleuronectes herzensteini. Mol. Ecol. Notes 2007; 7: 79–81.
Schuelke M. An economic method for the fluorescent labeling of PCR fragments. Nat. Biotechnol. 2000; 18: 233–234.
Lorenz E, Frees KL, Schwartz DA. M13-tailed primers improve the readability and usability of microsatellite analyses performed with two different allele-sizing methods. Biotechniques 2001; 31: 24–27.
Duchesne P, Godbout MH, Bernatchez L. PAPA (package for the analysis of parental allocation): a computer program for simulated and real parental allocation. Mol. Ecol. Notes 2002; 2: 191–193.
San Cristobal M, Chevalet C. Error tolerant parent identification from a finite set of individuals. Genet. Res. 1997; 70: 53–62.
Raymond M, Rousset F. GENEPOP (version 1.2.): population genetics software for exact tests and ecumenicism. J. Hered. 1995; 86: 248–249.
Lande R, Barrowclough GF. Effective population size, genetic variation, and their use in population management. In: Soule ME (ed.): Viable Populations for Conservation. Cambridge University Press, Cambridge, UK. 1987; 87–123.
Ortega-Villaizan Romo M, Aritaki M, Taniguchi N. Pedigree analysis of recaptured fish in the stock enhancement program of spotted halibut Verasper variegates. Fish. Sci. 2006; 72: 48–52.
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Kim, S.G., Morishima, K., Satoh, N. et al. Parentage assignment in hatchery population of brown sole Pleuronectes herzensteini by microsatellite DNA markers. Fish Sci 73, 1087–1093 (2007). https://doi.org/10.1111/j.1444-2906.2007.01440.x
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DOI: https://doi.org/10.1111/j.1444-2906.2007.01440.x