Abstract
We developed and characterized 13 microsatellite markers for Nuphar submersa, a critically endangered freshwater macrophyte of central Japan. In all the studied populations, ten out of isolated 13 loci showed polymorphism. The 13 loci showed one to five alleles per locus, with observed and expected heterozygosities ranging from 0 to 0.40 and from 0 to 0.67, respectively. Between 5 and 11 of the 13 loci were successfully amplified across the six other Nuphar taxa. The markers described here will be useful for a conservation genetic study of the species and informing the development of effective conservation programs of N. submersa and related species.
References
Goudet J (1995) FSTAT (Version 1.2): a computer program to calculate F-statistics. J Hered 86:485–486
Lian C, Hogetsu T (2002) Development of microsatellite markers in black locust (Robinia pseudoacasia) using a dual-suppression-PCR technique. Mol Ecol Notes 2:211–213
Lian C, Wadud MA, Geng Q, Shimatani K, Hougetsu T (2006) An improved technique for isolating codominant compound microsatellite markers. J Plant Res 119:415–417
Milligan B (1992) Plant DNA isolation. In: Hoelzel AR (ed) Molecular genetic analysis of populations: a practical approach. IRL Press, Oxford, pp 59–88
Ministry of Environment (2007) The red list of vascular plants of Japan. http://www.biodic.go.jp/rdb/rdb_f.html. Accessed 2 Aug 2011 (in Japanese)
Rozen S, Skaletsky H (2000) Primer3 on the WWW for general users and for biologist programmers. In: Krawetz S, Misener S (eds) Bioinformatics methods and protocols: methods in molecular biology. Humana Press, New Jersey, pp 365–386
Shiga T, Ishii J, Isagi Y, Kadono Y (2006) Nuphar submersa (Nymphaeaceae), a new species from central Japan. Acta Phytotax Geobot 57:113–122
Acknowledgments
We thank Y. Tsukasaki, M. Mori, Y. Shibata, S. Shibata, Y. Komine, and Y. Sugita for their helpful support of sampling. We also thank J. Worth for his helpful comments on this manuscript. This work was supported by the Global Environment Research Fund (D-0903) of the Ministry of the Environment, Japan and Grants in Aid for Scientific Research (20770074) from the Japan Society for the Promotion of Science.
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Yokogawa, M., Shiga, T., Kaneko, S. et al. Development of nuclear microsatellite markers for the critically endangered freshwater macrophyte, Nuphar submersa (Nymphaeaceae), and cross-species amplification in six additional Nuphar taxa. Conservation Genet Resour 4, 295–298 (2012). https://doi.org/10.1007/s12686-011-9528-y
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DOI: https://doi.org/10.1007/s12686-011-9528-y