Abstract
Avian influenza viruses A/turkey/Almaty/535/04 (H11N9) and A/herring gull/Atyrau/2186/07 (H11N2) isolated in Kazakhstan were characterized as low pathogenic in biological and genetic studies. Putative glycosylation sites were identical to the putative sites in published H11, N2, and N9 isolates sequences. Compared with published data no additional basic amino acid residues were found in the hemagglutinin (HA) cleavage site of these Kazakhstan strains. Phylogenetic analysis revealed a rare case of Eurasian-American reassortment in the HA gene of A/herring gull/Atyrau/2186/07 (H11N2) virus and significant sequence difference of the HA and the neuraminidase genes of the virus A/turkey/Almaty/535/04 (H11N9) from the previously published GenBank viruses.
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References
B.C. Easterday, V.S. Hinshaw, D.A. Halvorson, in Diseases of poultry, ed. by D.W. Calnek, et al. (Iowa State Press, Ames, 1997), p. 583
J. Banks, E. Speidel, D.J. Alexander, Characterisation of an avian influenza A virus isolated from a human is an intermediate host necessary for the emergence of pandemic influenza viruses. Arch. Virol. 143, 781–787 (1998)
T. Ito, J. Couceiro, S. Kelm et al., Molecular basis for the generation in pigs of influenza A viruses with pandemic potential. J. Virol. 72, 7367–7373 (1998)
C. Scholtissek, Molecular epidemiology of influenza. Arch. Virol. Suppl. 13, 99–103 (1997)
R.G. Webster, Influenza virus: transmission between species and relevance to emergence of the next human pandemic. Arch. Virol. Suppl. 13, 105–113 (1997)
D.K. Lvov, S.S. Yamnikova, I.T. Fedyakina, Ecology and evolution of influenza virus in Russia (1979–2002). Vopr. Virusol. 3, 17–24 (2004). (in Russian)
Meeting to Conclude and Endorse the Proposed Central Asian Flyway Action Plan to Conserve Migratory Waterbirds and their Habitats. (New Delhi, India 10–12 June, 2005), http://www.cms.int/bodies/meetings/regional/caf/wrd/inf_04_2_Kazakhstan_Country_Report.doc. Accessed 11 June 2010
M.Kh. Sayatov, A. Kydyrmanov, S. Asanova, N. Ishmukhametova, K. Daulbayeva, L. Shakhvorostova, K. Zhumatov, Influenza A virus surveillance in wild birds in Northern and Eastern Caspian in 2002–2006. Proceedings of International Conference Preparedness to the influenza pandemic—an international outlook, 79–80, Saint-Petersburg, Russia, March 15–17, 2007
J. Li, C.J. Cardona, Z. Xing, P.R. Woolcock, Genetic and phenotypic characterization of a low-pathogenicity avian influenza H11N9 virus. Arch. Virol. 153, 1899–1908 (2008)
S. Payungporn, P. Phakdeewirot, S. Chutinimitkul et al., Single-step multiplex reverse transcription-polymerase Chain reaction (RT-PCR) for Influenza A virus subtype H5N1 detection. Viral Immunol. 17, 588–593 (2004)
Office International des Epizooties (OIE), Manual of Diagnostic Tests and Vaccines for Terrestrial Animals 2010, Chapter 2.3.4 Avian influenza, (2010)
L.J. Reed, H. Muench, A simple method for estimating fifty percent endpoints. Am. J. Hyg. 27, 493–497 (1938)
WHO, Manual on Animal Influenza Diagnosis and Surveillance. (WHO, Geneva, 2002), pp. 28–47
E. Hoffmann, J. Stech, Y. Guan, R.G. Webster, D.R. Perez, Universal primer set for the full-length amplification of all influenza A viruses. Arch. Virol. 146, 2275–2289 (2001)
K. Tamura, J. Dudley, M. Nei, S. Kumar, MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol. Biol. Evol. 24, 1596–1599 (2007)
K. Tamura, M. Nei, Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees. Mol. Biol. Evol. 10, 512–526 (1993)
S.F. Altschul, W. Gish, W. Miller, E.W. Myers, D.J. Lipman, Basic local alignment search tool. J. Mol. Biol. 215, 403–410 (1990)
E. Nobusawa, T. Aoyama, H. Kato, Y. Suzuki, Y. Tateno, K. Nakajima, Comparison of complete amino acid sequences and receptor-binding properties among 13 serotypes of hemagglutinins of influenza A viruses. Virology 182, 475–485 (1991)
D.L. Suarez, M.L. Perdue, Multiple alignment comparison of the non-structural genes of influenza A viruses. Virus Res. 54, 59–69 (1998)
J.J. Treanor, M.H. Snader, W.T. London, B.R. Murphy, The B allele of the NS gene of avian influenza viruses, but not the A allele, attenuates a human influenza A virus for squirrel monkeys. Virology 171, 1–9 (1989)
S. Pawar, A. Chakrabarti, S. Cherian, S. Pande, M. Nanaware, S. Raut, B. Pal, S. Jadhav, S. Kode, S. Koratkar, V. Thite, A. Mishra, An avian influenza A(H11N1) virus from a wild aquatic bird revealing a unique Eurasian-American genetic reassortment. Virus Genes 41, 14–22 (2010)
D.A. Senne, Avian influenza in North and South America, 2002–2005. Avian Dis. 51(1 Suppl), 167–173 (2007)
C.M. Jonassen, K. Handeland, Avian influenza virus screening in wild waterfowl in Norway, 2005. Avian Dis. 51(1 Suppl), 425–428 (2007)
A.C. Hurt, P.M. Hansbro, P. Selleck, B. Olsen, C. Minton, A.W. Hampson, I.G. Barr, Isolation of avian influenza viruses from two different transhemispheric migratory shorebird species in Australia. Arch. Virol. 151, 2301–2309 (2006)
O.T. Gorman, R.O. Donis, Y. Kawaoka, R.G. Webster, Evolution of influenza A virus PB2 genes: implications for evolution of the ribonucleoprotein complex and origin of human influenza A virus. J. Virol. 64, 4893–4902 (1990)
O.T. Gorman, W.J. Bean, Y. Kawaoka, R.G. Webster, Evolution of the nucleoprotein gene of influenza A virus. J. Virol. 64, 1487–1497 (1990)
T. Ito, O.T. Gorman, Y. Kawaoka, W.J. Bean, R.G. Webster, Evolutionary analysis of the influenza A virus M gene with comparison of the M1 and M2 proteins. J. Virol. 65, 5491–5498 (1991)
Y. Kawaoka, O.T. Gorman, T. Ito, K. Wells, R.O. Donis, M.R. Castrucci, I. Donatelli, R.G. Webster, Influence of host species on the evolution of the nonstructural (NS) gene of influenza A viruses. Virus Res. 55, 143–156 (1998)
L. Widjaja, S.L. Krauss, R.J. Webby, T. Xie, R.G. Webster, Matrix gene of influenza A viruses isolated from wild aquatic birds: ecology and emergence of influenza A viruses. J. Virol. 78, 8771–8779 (2004)
V.G. Dugan, R. Chen, D.J. Spiro, N. Sengamalay, J. Zaborsky, E. Ghedin et al., The evolutionary genetics and emergence of avian influenza viruses in wild birds. PLoS Pathog 4, e1000076 (2008)
S.S. Yamnikova, A.S. Gambaryan, V.A. Aristova, D.K. Lvov, N.F. Lomakina, V. Munster, P. Lexmond, R.A. Fouchier, A/H13 and A/H16 influenza viruses: different lines of one precursors. Vopr. Virusol. 4, 10–18 (2009). (in Russian)
N.V. Makarova, N.V. Kaverin, S. Krauss, D. Senne, R.G. Webster, Transmission of Eurasian avian H2 influenza virus to shorebirds in North America. J. Gen. Virol. 80, 3167–3171 (1999)
J.M. Pearce, A.M. Ramey, H.S. Ip, R. E. Gill Jr, Limited evidence of trans-hemispheric movement of avian influenza viruses among contemporary North American shorebird isolates. Virus Res. 148(1–2), 44–50 (2010)
Acknowledgments
Research studies were conducted within the framework of projects “Epidemiological monitoring of Kazakhstan part of the Caspian Sea for indication of different pathogens circulating in populations of wild birds, animals and fish and their molecular-biological characterization” and “Development of PCR kit for simultaneous ortho- and paramyxoviruses infections diagnostics” funded by Education and Science Ministry of the Republic of Kazakhstan. The authors would like to thank M. Lipkind (Kimron Veterinary Institute, Beit Dagan, Israel) and Dr R. Fouchier (Institute of Virology of Erasmus Medical Center, Rotterdam, The Netherlands) for kindly providing the spectrum of antiNA and subtype specific anti-haemagglutinin sera for subtyping of our viruses. We are thankful to Dr. Mary Pantin-Jackwood (Southeast Poultry Research Laboratory, Athens, USA), Simon Goodman (Institute of Comparative Biology, University of Leeds, UK) for critical viewing and editing this article and Dr. Jinling Li for kindly providing her H11 article. We also thank Alexander Shevtsov and other colleagues from National Center of Biotechnology (Astana, Kazakhstan) for skillful sequencing of our viruses.
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Karamendin, K., Kydyrmanov, A., Zhumatov, K. et al. Phylogenetic analysis of avian influenza viruses of H11 subtype isolated in Kazakhstan. Virus Genes 43, 46–54 (2011). https://doi.org/10.1007/s11262-011-0603-y
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DOI: https://doi.org/10.1007/s11262-011-0603-y