Abstract
Purpose
The aim of our study is to provide a precise quantification for the association between DNA methyltransferase 3B (DNMT3B) variations (rs2424913 C/T, rs1569686 G/T, rs6087990 T/C and rs2424908 T/C) and the risk of cancer.
Methods
We performed a systematic literature review and assessed the methodological quality of included case–control designed studies based on Newcastle–Ottawa Scale. Pooled odds ratios (ORs) and corresponding 95 % confidence intervals (95 % CIs) were calculated to assess the strengths of the associations.
Results
We identified 34 studies for pooled analyses. Overall, the results demonstrated that rs2424913 polymorphism was significantly associated with negative cancer risk in the African population (CT vs TT: OR 0.10, 95 % CI 0.02–0.63, P = 0.01; CT+CC vs TT: OR 0.14, 95 % CI 0.03–0.76, P = 0.02), and the rs1569686 polymorphism was significantly associated with a subtly decreased cancer risk (GT vs TT: OR 0.80, 95 % CI 0.72–0.90, P < 0.01; GT+GG vs TT: OR 0.84, 95 % CI 0.76–0.94, P < 0.01), particularly in the Asian population (GT vs TT: OR 0.79, 95 % CI 0.66–0.96, P < 0.01) and in colorectal cancer subgroup (G vs T: OR 0.69, 95 % CI 0.54–0.88, P < 0.01). In addition, the rs6087990 polymorphism was associated with decreased risk in Asian population (T vs C: OR 0.77, 95 % CI 0.62–0.96, P = 0.02). Similarly, the rs2424908 polymorphism was observed as a protective factor for cancer in the Asian population (CT+CC vs TT: OR 0.79, 95 % CI 0.66–0.95, P = 0.01).
Conclusions
DNMT3B polymorphisms might be associated with decreased cancer risk especially in the Asian population and for colorectal cancer. Further multicentric studies are still needed to confirm the results.
Similar content being viewed by others
References
Adami H-O, Day N, Trichopoulos D, Willett W (2001) Primary and secondary prevention in the reduction of cancer morbidity and mortality. Eur J Cancer 37:118–127
Aung PP, Matsumura S, Kuraoka K, Kunimitsu K, Yoshida K et al (2005) No evidence of correlation between the single nucleotide polymorphism of DNMT3B promoter and gastric cancer risk in a Japanese population. Oncol Rep 14:1151–1154
Bachman KE, Rountree MR, Baylin SB (2001) Dnmt3a and Dnmt3b are transcriptional repressors that exhibit unique localization properties to heterochromatin. J Biol Chem 276:32282–32287
Bamshad M, Wooding S, Salisbury BA, Stephens JC (2004) Deconstructing the relationship between genetics and race. Nat Rev Genet 5:598–609
Bao Q, He B, Pan Y, Tang Z, Zhang Y et al (2011) Genetic variation in the promoter of DNMT3B is associated with the risk of colorectal cancer. Int J Colorectal Dis 26:1107–1112
Bheemanaik S, Reddy Y, Rao D (2006) Structure, function and mechanism of exocyclic DNA methyltransferases. Biochem J 399:177–190
Bjornsson HT, Daniele Fallin M, Feinberg AP (2004) An integrated epigenetic and genetic approach to common human disease. Trends Genet 20:350–358
Bourc’his D, Xu G-L, Lin C-S, Bollman B, Bestor TH (2001) Dnmt3L and the establishment of maternal genomic imprints. Science 294:2536–2539
Chang K-P, Hao S-P, Liu C-T, Cheng M-H, Chang Y-L et al (2007) Promoter polymorphisms of <i>DNMT3B</i> and the risk of head and neck squamous cell carcinoma in Taiwan: a case–control study. Oral Oncol 43:345–351
Chang K-P, Hao S-P, Tsang N-M, Chang Y-L, Cheng M-H et al (2008) Gene expression and promoter polymorphisms of DNA methyltransferase 3B in nasopharyngeal carcinomas in Taiwanese people: a case–control study. Oncol Rep 19:217–222
Chen YC, Hunter DJ (2005) Molecular epidemiology of cancer. CA Cancer J Clin 55:45–54
Daraei A, Salehi R, MohamadHashem F (2011) DNA-methyltransferase 3B 39179 G>T polymorphism and risk of sporadic colorectal cancer in a subset of Iranian population. J Res Med Sci Off J Isfahan Univ Med Sci 16:807
de Vogel S, Wouters KA, Gottschalk RW, van Schooten FJ, de Goeij AF et al (2009) Genetic variants of methyl metabolizing enzymes and epigenetic regulators: associations with promoter CpG island hypermethylation in colorectal cancer. Cancer Epidemiol Biomark Prev 18:3086–3096
DerSimonian R, Laird N (1986) Meta-analysis in clinical trials. Control Clin Trials 7:177–188
Ezzikouri S, Benazzouz M, Afifi R, Hassar M, Akil A et al (2009) Single nucleotide polymorphism in DNMT3B promoter and its association with hepatocellular carcinoma in a Moroccan population. Infect Genet Evol 9:877–881
Fan H, Zhang F, Hu J, Liu D, Zhao Z (2008a) Promoter polymorphisms of DNMT3B and the risk of colorectal cancer in Chinese: a case–control study. J Exp Clin Cancer Res 27:1–6
Fan H, Liu D-S, Zhang S-H, Hu J-B, Zhang F et al (2008b) DNMT3B 579 G>T promoter polymorphism and risk of esophagus carcinoma in Chinese. World J Gastroenterol 14:2230
Fang C, Sun W, Han H, Shi L, Wang L et al (2012) The -149C>T polymorphism of DNMT3B is not associated with colorectal cancer risk: evidence from a meta-analysis based on case–control studies. Exp Ther Med 4:728–732
Foulkes WD (2008) Inherited susceptibility to common cancers. N Engl J Med 359:2143–2153
Goll MG, Bestor TH (2005) Eukaryotic cytosine methyltransferases. Annu Rev Biochem 74:481–514
Guo X, Zhang L, Wu M, Wang N, Liu Y et al (2010) Association of the DNMT3B polymorphism with colorectal adenomatous polyps and adenocarcinoma. Mol Biol Rep 37:219–225
Hernández-Sotelo D, García-Aguilar R, Castro-Coronel Y, Magaña JJ, Leyva-Vazquez MA et al (2013) The 46359CT polymorphism of DNMT3B is associated with the risk of cervical cancer. Mol Biol Rep 40:4275–4280
Hong Y-S, Lee H-J, You C-H, Roh M-S, Kwak J-Y et al (2007) DNMT3b 39179G T polymorphism and the risk of adenocarcinoma of the colon in Koreans. Biochem Genet 45:155–163
Hu J, Fan H, Liu D, Zhang S, Zhang F et al (2010) DNMT3B promoter polymorphism and risk of gastric cancer. Dig Dis Sci 55:1011–1016
Iacopetta B, Heyworth J, Girschik J, Grieu F, Clayforth C et al (2009) The MTHFR C677T and ΔDNMT3B C-149T polymorphisms confer different risks for right-and left-sided colorectal cancer. Int J Cancer 125:84–90
Jemal A, Bray F, Center MM, Ferlay J, Ward E et al (2011) Global cancer statistics. CA Cancer J Clin 61:69–90
Jones PA, Baylin SB (2002) The fundamental role of epigenetic events in cancer. Nat Rev Genet 3:415–428
Jones JS, Amos CI, Pande M, Gu X, Chen J et al (2006) DNMT3b polymorphism and hereditary nonpolyposis colorectal cancer age of onset. Cancer Epidemiol Biomark Prev 15:886–891
Karpinski P, Myszka A, Ramsey D, Misiak B, Gil J et al (2010) Polymorphisms in methyl-group metabolism genes and risk of sporadic colorectal cancer with relation to the CpG island methylator phenotype. Cancer Epidemiol 34:338–344
Lao Y, Wu H, Zhao C, Wu Q, Qiao F et al (2013) Promoter polymorphisms of DNA methyltransferase 3B and risk of hepatocellular carcinoma. Biomed Rep 1:771–775
Lee SJ, Jeon H-S, Jang J-S, Park SH, Lee GY et al (2005) DNMT3B polymorphisms and risk of primary lung cancer. Carcinogenesis 26:403–409
Li G, Wang L-E, Chamberlain RM, Amos CI, Spitz MR et al (2004) p73 G4C14-to-A4T14 polymorphism and risk of lung cancer. Cancer Res 64:6863–6866
Li Y, Dai Y, Wu C-L, Per P, Cao X-H et al (2005) The C46359Tpolymorphismof DNMT3Bpromoter gene and pathogenesis of acute leukemia. Chin J Intern Med 44:588–591
Liu D-S (2008a) Association between DNMT3B C46359T Polymorphisms and the Susceptibility to esophageal cancer. J Southeast Univ (Med Sci Edi) 27:319–323
Liu D-S (2008b) Association between DNMT3B-283SNP polymorphisms and the susceptibility to gastric cancer. Nei Mong J Tradit Chin Med 27:187–188
Liu Z, Wang L, Wang L-E, Sturgis EM, Wei Q (2008) Polymorphisms of the <i> DNMT3B</i> gene and risk of squamous cell carcinoma of the head and neck: a case–control study. Cancer Lett 268:158–165
Liu H, Jiao Y, Guan Y, Lao Y, Zhao C et al (2012) The DNMT3B-579 G>T promoter polymorphism and risk of lung cancer. Exp Ther Med 3:525–529
Mantel N, Haenszel W (2004) Statistical aspects of the analysis of data from retrospective studies of disease. Chall Epidemiol Issues Sel Read 1:533–553
Meng Q, Zhang J, Lian B, Song C (2013) Genetic polymorphism of DNA methyltransferase 3B 149 C>T and risk of colorectal cancer: a meta-analysis. Tumor Biol 35:1-6
Moher D, Liberati A, Tetzlaff J, Altman DG (2009) Preferred reporting items for systematic reviews and meta-analyses: the PRISMA statement. Ann Intern Med 151:264–269
Montgomery KG, Liu M, Eccles DM, Campbell IG (2004) The DNMT3B C→T promoter polymorphism and risk of breast cancer in a British population: a case–control study. Breast Cancer Res 6:R390–R394
Mostowska A, Sajdak S, Pawlik P, Lianeri M, Jagodzinski PP (2013) DNMT1, DNMT3A and DNMT3B gene variants in relation to ovarian cancer risk in the Polish population. Mol Biol Rep 40:4893–4899
Okano M, Bell DW, Haber DA, Li E (1999) DNA methyltransferases Dnmt3a and Dnmt3b are essential for de novo methylation and mammalian development. Cell 99:247–257
Paz MF, Fraga MF, Avila S, Guo M, Pollan M et al (2003) A systematic profile of DNA methylation in human cancer cell lines. Cancer Res 63:1114–1121
Peters JL, Sutton AJ, Jones DR, Abrams KR, Rushton L (2006) Comparison of two methods to detect publication bias in meta-analysis. JAMA 295:676–680
Reeves SG, Mossman D, Meldrum CJ, Kurzawski G, Suchy J et al (2008) The -149C > T SNP within the DeltaDNMT3B gene, is not associated with early disease onset in hereditary non-polyposis colorectal cancer. Cancer Lett 265:39–44
Robertson KD, Uzvolgyi E, Liang G, Talmadge C, Sumegi J et al (1999) The human DNA methyltransferases (DNMTs) 1, 3a and 3b: coordinate mRNA expression in normal tissues and overexpression in tumors. Nucleic Acids Res 27:2291–2298
Shen H, Wang L, Spitz MR, Hong WK, Mao L et al (2002) A novel polymorphism in human cytosine DNA-methyltransferase-3B promoter is associated with an increased risk of lung cancer. Cancer Res 62:4992–4995
Siegel R, Ma J, Zou Z, Jemal A (2014) Cancer statistics, 2014. CA Cancer J Clin 64:9–29
Singal R, Das PM, Manoharan M, Reis IM, Schlesselman JJ (2005) Polymorphisms in the DNA methyltransferase 3b gene and prostate cancer risk. Oncol Rep 14:569–573
Srivastava K, Srivastava A, Mittal B (2010) DNMT3B-579 G>T promoter polymorphism and risk of gallbladder carcinoma in North Indian population. J Gastrointest Cancer 41:248–253
Succi M, de Castro TB, Galbiatti ALS, Arantes LMRB, da Silva JNG et al (2014) DNMT3B C46359T and SHMT1 C1420T polymorphisms in the folate pathway in carcinogenesis of head and neck. Mol Biol Rep 41:581–589
Sun M, Yang X, Xu W, Yao G, Pan H et al (2012) Association of DNMT1 and DNMT3B polymorphisms with breast cancer risk in Han Chinese women from South China. Genet Mol Res 11:4330–4341
Wang L, Rodriguez M, Kim ES, Xu Y, Bekele N et al (2004) A novel C/T polymorphism in the core promoter of human de novo cytosine DNA methyltransferase 3B6 is associated with prognosis in head and neck cancer. Int J Oncol 25:993–1002
Wang Y-M, Wang R, Wen D-G, Li Y, Guo W et al (2005) Single nucleotide polymorphism in DNA methyltransferase 3B promoter and its association with gastric cardiac adenocarcinoma in North China. World J Gastroenterol 11:3623
Weber M, Hellmann I, Stadler MB, Ramos L, Pääbo S et al (2007) Distribution, silencing potential and evolutionary impact of promoter DNA methylation in the human genome. Nat Genet 39:457–466
Wells G, Shea B, O’connell D, Peterson J, Welch V et al (2000) The Newcastle–Ottawa Scale (NOS) for assessing the quality of nonrandomised studies in meta-analyses. http://www.ohri.ca/programs/clinical_epidemiology/oxford.asp
Wu Y, Lin J-S (2007) DNA methyltransferase 3B promoter polymorphism and its susceptibility to primary hepatocellular carcinoma in the Chinese Han nationality population: a case–control study. World J Gastroenterol 13:6082
Xu F (2013) Associated study on the SNPs of DNMT3A/3B wih genetic susceptibility to colorectal cancer, Master's thesis (in Chinese). Tianjin Medical University. http://www.cnki.net/KCMS/detail/detail.aspx?QueryID=7&CurRec=1&recid=&filename=1013321896.nh&dbname=CMFDLAST2014&dbcode=CMFD&pr=&urlid=&yx=&v=MjM2ODFyQ1VSTDZlWmVacEZ5amhVYnZJVkYyNkhiQzZIOW5GcVpFYlBJUjhlWDFMdXhZUzdEaDFUM3FUcldNMUY=
Yang M (2006) Association of polymorphisms in DNMT3B gene with susceptibility of non-small-cell lung cancer in Chinese population, Master's thesis (in Chinese). Jilin University. http://www.cnki.net/KCMS/detail/detail.aspx?QueryID=5&CurRec=8&recid=&filename=2008062951.nh&dbname=CMFD9908&dbcode=CMFD&pr=&urlid=&yx=&v=MDA5NzBqSnJwRWJQSVI4ZVgxTHV4WVM3RGgxVDNxVHJXTTFGckNVUkw2ZVplWnBGeWpoVXJ2TFYxMjdGck8rSE4=
Yang X-X, He X-Q, Li F-X, Wu Y-S, Gao Y et al (2012) Risk-association of DNA methyltransferases polymorphisms with gastric cancer in the southern chinese population. Int J Mol Sci 13:8364–8378
Zhang S-H (2008) Association between DNA methyltansferases 3B (DNMT3B) promoter and the Susceptibility to gastric cancer, Master's thesis (in Chinese). Jiamusi University. http://www.cnki.net/KCMS/detail/detail.aspx?QueryID=1&CurRec=66&recid=&filename=2008212880.nh&dbname=CMFD0911&dbcode=CMFD&pr=&urlid=&yx=&v=MjU2OTM1RWJQSVI4ZVgxTHV4WVM3RGgxVDNxVHJXTTFGckNVUkw2ZVplWnBGeWpnVmJ6SlYxMjdGckc1SE5uRXI=
Zhang S-H, Yang L-H, Ma X-M (2011) Association between SNP(149C/T) of DNMT3B gene and the risk of lung cancer in Jiamusi. Chin J Gerontol 31:4090–4092
Zheng Q, T-t Zeng, Chen J, Liu H, Zhang H et al (2013) Association between DNA methyltransferases 3B gene polymorphisms and the susceptibility to acute myeloid leukemia in Chinese Han population. PLoS One 8:e74626
Zhu S, Zhang H, Tang Y, Liu P, Wang J (2012) DNMT3B polymorphisms and cancer risk: a meta analysis of 24 case–control studies. Mol Biol Rep 39:4429–4437
Acknowledgments
This research was supported by People’s Republic of China National Natural Science Foundation of China (No. 81202278), and Program for Science & Technology Innovation Talents in Universities of Henan Province (No. 2010HASTIT027), and Excellent Youth Foundation of He’nan Scientific Committee (No. 124100510007).
Conflict of interest
The authors declare no potential conflicts of interest.
Author information
Authors and Affiliations
Corresponding author
Rights and permissions
About this article
Cite this article
Duan, F., Cui, S., Song, C. et al. Systematic evaluation of cancer risk associated with DNMT3B polymorphisms. J Cancer Res Clin Oncol 141, 1205–1220 (2015). https://doi.org/10.1007/s00432-014-1894-x
Received:
Accepted:
Published:
Issue Date:
DOI: https://doi.org/10.1007/s00432-014-1894-x