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Molecular cloning of an arabidopsis homologue of GCN2, a protein kinase involved in co-ordinated response to amino acid starvation

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Abstract

DNA homologous to the yeast (Saccharomyces cerevisiae) protein kinase gene, GCN2, was amplified from arabidopsis [Arabidopsis thaliana (L.) Heynh.] RNA and given the name AtGCN2. The AtGCN2 peptide sequence included adjacent protein kinase and histidyl tRNA synthetase-like domains and showed 45% sequence identity with the GCN2 peptide sequence in the protein kinase domain. AtGCN2 transcripts were detectable in RNA from roots, leaves, stems, buds, flowers, siliques and seedlings. GCN2 is required for yeast cells to respond to amino acid starvation. Expression of AtGCN2 in yeast gcn2 mutants complemented the mutation, enabling growth in the presence of sulfometuron methyl, an inhibitor of branched-chain amino acid biosynthesis, and 3-aminotriazole, an inhibitor of histidine biosynthesis.

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Abbreviations

3-AT:

3-aminotriazole

eIF2α:

α subunit of eukaryotic translation initiation factor-2

RACE:

rapid amplification of cDNA ends

SM:

sulfometuron methyl

References

  • Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25:3389–3402

    PubMed  Google Scholar 

  • Chang L-Y, Yang WY, Browning K, Roth D (1999) Specific in vitro phosphorylation of plant eIF2α by eukaryotic eIF2α kinases. Plant Mol Biol 41:363–370

    Article  CAS  PubMed  Google Scholar 

  • Chang L-Y, Yang WY, Roth D (2000) Functional complementation by wheat eIF2α in the yeast GCN2-mediated pathway. Biochem Biophys Res Commun 279:468–474

    Article  CAS  PubMed  Google Scholar 

  • Chen J-J, Throop MS, Gehrke L, Kuo I, Pal JK, Brodsky M, London IM (1991) Cloning of the cDNA of the heme-regulated eukaryotic initiation factor-2 alpha (eIF2α) kinase of rabbit reticulocytes—homology to yeast GCN2 protein kinase and human double-stranded RNA-dependent eIF2α kinase. Proc Natl Acad Sci USA 88:7729–7733

    CAS  PubMed  Google Scholar 

  • Chong KL, Feng L, Schappert K, Meurs E, Donahue TF, Friessen JD, Hovanessian AG, Williams BRG (1992) Human P68 kinase exhibits growth suppression in yeast and homology to the translational regulator GCN2. EMBO J 11:1553–1562

    CAS  PubMed  Google Scholar 

  • Crum CJ, Hiddinga HJ, Roth DA (1988) Tobacco mosaic virus infection stimulates the phosphorylation of a plant protein associated with double-stranded RNA-dependent protein kinase activity. J Biol Chem 263:13440–13443

    CAS  PubMed  Google Scholar 

  • Falco SC, Dumas KS (1985) Genetic analysis of mutants of Saccharomyces cerevisiae resistant to the herbicide sulfometuron methyl. Genetics 109:21–35

    CAS  PubMed  Google Scholar 

  • Gietz RD, Schiestl RH, Willems AR, Woods RA (1995) Studies on the transformation of intact yeast cells by the LiAc/S-DNA/PEG procedure. Yeast 11:355–360

    CAS  PubMed  Google Scholar 

  • Guyer D, Patton D, Ward E (1995) Evidence for cross-pathway regulation of metabolic gene expression in plants. Proc Natl Acad Sci USA 92:4997–5000

    CAS  PubMed  Google Scholar 

  • Hinnebusch AG (1992) General and pathway-specific regulatory mechanisms controlling the synthesis of amino acid biosynthetic enzymes in Saccharomyces cerevisiae. In: Jones EW, Pringle JR, Broach JB (eds) Mol Cell Biol Yeast Saccharomyces, vol 2, Gene Expression. Cold Spring Harbor Laboratory Press, New York, pp 319–414

  • Hinnebusch AG (1994) Translational control of GCN4—an in vivo barometer of initiation factor activity. Trends Biochem Sci 19:409–414

    CAS  PubMed  Google Scholar 

  • Hinnebusch AG (1997) Translational regulation of yeast GCN4—a window on factors that control initiator-tRNA binding to the ribosome. J Biol Chem 272:21661–21664

    Article  CAS  PubMed  Google Scholar 

  • Hinnebusch AG, Fink GR (1983) Positive regulation in the general amino acid control of Saccharomyces cerevisiae. Proc Natl Acad Sci USA 80:5374–5378

    CAS  PubMed  Google Scholar 

  • Icely PL, Gros P, Bergeron JJM, Devault A, Afar DEH, Bell JC (1991) TIK, a novel serine threonine kinase, is recognized by antibodies directed against phosphotyrosine. J Biol Chem 266:16073–16077

    CAS  PubMed  Google Scholar 

  • Langland JO, Langland L, Zeman C, Saha D, Roth DA (1996) Phosphorylation of plant eukaryotic initiation factor-2 by the plant encoded double-stranded RNA-dependent protein kinase, pPKR, and inhibition of protein synthesis in vitro. J Biol Chem 271:4539–4544

    Article  CAS  PubMed  Google Scholar 

  • Mellor H, Flowers KM, Kimball SR, Jefferson LS (1994a) Cloning and characterization of cDNA encoding rat hemin-sensitive initiation factor-2 alpha (eIF2α) kinase—evidence for multi-tissue expression. J Biol Chem 269:10201–10204

    CAS  PubMed  Google Scholar 

  • Mellor H, Flowers KM, Kimball SR, Jefferson LS (1994b) Cloning and characterization of a cDNA encoding rat PKR, the double-stranded RNA-dependent eukaryotic initiation factor-II kinase. Biochim Biophys Acta 1219:693–696

    Article  CAS  PubMed  Google Scholar 

  • Meurs E, Chong K, Galabru J, Thomas NSB, Kerr IM, Williams BRG, Hovanessian AG (1990) Molecular cloning and characterization of the human double stranded RNA-activated protein kinase induced by interferon. Cell 62:379–390

    CAS  PubMed  Google Scholar 

  • Natarajan K, Meyer MR, Jackson BM, Slade D, Roberts C, Hinnebusch AG, Marton MJ (2001) Transcriptional profiling shows that Gcn4p is a master regulator of gene expression during amino acid starvation in yeast. Mol Cell Biol 21:4347–4368

    CAS  PubMed  Google Scholar 

  • Sambrook J, Fritsch EF, Maniatis T (1989) Molecular cloning. A laboratory manual, 2nd edn. Cold Spring Harbor Laboratory Press, New York

  • Samuel CE (1993) The eIF2α protein kinases, regulators of translation in eukaryotes from yeasts to humans. J Biol Chem 268:7603–7608

    CAS  PubMed  Google Scholar 

  • Santoyo J, Alcalde J, Mendez R, Pulido D, de Haro C (1997) Cloning and characterization of a cDNA encoding a protein synthesis initiation factor-2 alpha (eIF2α) kinase from Drosophila melanogaster—homology to yeast GCN2 protein kinase. J Biol Chem 272:12544–12550

    Article  CAS  PubMed  Google Scholar 

  • Sattlegger E, Hinnebusch AG, Barthelmess IB (1998) cpc-3, the Neurospora crassa homologue of yeast GCN2, encodes a polypeptide with juxtaposed eIF2α kinase and histidyl-tRNA synthetase-related domains required for general amino acid control. J Biol Chem 273:20404–20416

    Article  CAS  PubMed  Google Scholar 

  • Wek RC, Jackson BM, Hinnebusch AG (1989) Juxtaposition of domains homologous to protein kinases and histidyl transfer RNA synthetases in GCN2 protein suggests a mechanism for coupling GCN4 expression to amino acid availability. Proc Natl Acad Sci USA 86:4579–4583

    CAS  PubMed  Google Scholar 

  • Wolfner M, Yep D, Messenguy F, Fink GR (1975) Integration of amino acid biosynthesis into the cell cycle of Saccharomyces cerevisiae. J Mol Biol 96:273–290

    CAS  PubMed  Google Scholar 

  • Zhao J, Williams CC, Last RL (1998) Induction of Arabidopsis tryptophan pathway enzymes and camalexin by amino acid starvation, oxidative stress, and an abiotic elicitor. Plant Cell 10:359–370

    Google Scholar 

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Acknowledgement

Rothamsted receives grant-aided support from the Biotechnology and Biological Sciences Research Council of the United Kingdom.

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Correspondence to Nigel G. Halford.

Additional information

The nucleotide sequence of AtGCN2 has been deposited in the EMBL database under accession number AJ459823

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Zhang, Y., Dickinson, J.R., Paul, M.J. et al. Molecular cloning of an arabidopsis homologue of GCN2, a protein kinase involved in co-ordinated response to amino acid starvation. Planta 217, 668–675 (2003). https://doi.org/10.1007/s00425-003-1025-4

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  • DOI: https://doi.org/10.1007/s00425-003-1025-4

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