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International Conference on Intelligent Computing

ICIC 2011: Bio-Inspired Computing and Applications pp 462–469Cite as

Similarity Analysis of DNA Sequences Based on Three 2-D Cumulative Ratio Curves

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Part of the book series: Lecture Notes in Computer Science ((LNBI,volume 6840))

Abstract

Based on three classifications of the DNA bases, three 2-D graphical representations of DNA primary sequences were proposed. These are called R/Y-ratio curve, M/K-ratio curve and W/S-ratio curve, respectively. The presented method has the advantages that (a) there is no loss of information when transferring a DNA sequence to its mathematical representation; and (b) the coordinates of every node on the three 2-D curves have clear biological implication. As an example, the similarities among the coding sequences of the first exon of beta-globin gene from eight species were examined.

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Author information

Authors and Affiliations

  1. Intelligent Computing Laboratory, Hefei Institute of Intelligent Machines, Chinese Academy of Sciences, P.O. Box 1130, Hefei, Anhui, 230031, China

    Hong-Jie Yu

  2. School of Science, Anhui Science and Technology University, Fengyang, Anhui, 233100, China

    Hong-Jie Yu

  3. Department of Automation, University of Science and Technology of China, Hefei, China

    Hong-Jie Yu

Authors
  1. Hong-Jie Yu
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Editor information

Editors and Affiliations

  1. School of Electronics and Information Engineering, Tongji University, 4800 Caoan Road, 201804, Shanghai, China

    De-Shuang Huang

  2. School of Computer and Communication Engineering, Zhengzhou University of Light Industry, No. 5, Dongfeng Road, Jinshui District, 450002, Zhengzhou, Henan, China

    Yong Gan

  3. School of Electrical, Computer & Telecommunications Engineering, University of Wollongong, 2522, P.O. Box, North Wollongong, NSW, Australia

    Prashan Premaratne

  4. School of Computer Science and Engineering, Inha University, 402-751, Inchon, Korea

    Kyungsook Han

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© 2012 Springer-Verlag Berlin Heidelberg

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Cite this paper

Yu, HJ. (2012). Similarity Analysis of DNA Sequences Based on Three 2-D Cumulative Ratio Curves. In: Huang, DS., Gan, Y., Premaratne, P., Han, K. (eds) Bio-Inspired Computing and Applications. ICIC 2011. Lecture Notes in Computer Science(), vol 6840. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-642-24553-4_61

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  • DOI: https://doi.org/10.1007/978-3-642-24553-4_61

  • Publisher Name: Springer, Berlin, Heidelberg

  • Print ISBN: 978-3-642-24552-7

  • Online ISBN: 978-3-642-24553-4

  • eBook Packages: Computer ScienceComputer Science (R0)

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