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Data-Driven Interactive 3D Medical Image Segmentation Based on Structured Patch Model

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Part of the book series: Lecture Notes in Computer Science ((LNIP,volume 7917))

Abstract

In this paper, we present a novel three dimensional interactive medical image segmentation method based on high level knowledge of training set. Since the interactive system should provide intermediate results to an user quickly, insufficient low level models are used for most of previous methods. To exploit the high level knowledge within a short time, we construct a structured patch model that consists of multiple corresponding patch sets. The structured patch model includes the spatial relationships between neighboring patch sets and the prior knowledge of the corresponding patch set on each local region. The spatial relationships accelerate the search of corresponding patch in test time, while the prior knowledge improves the segmentation accuracy. The proposed framework provides not only fast editing tool, but the incremental learning system through adding the segmentation result to the training set. Experiments demonstrate that the proposed method is useful for fast and accurate segmentation of target objects from the multiple medical images.

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References

  1. Coupe, P., Manjon, J.V., Fonov, V., Pruessner, J., Robles, M., Collins, D.L.: Patch-based segmentation using expert priors: application to hippocampus and ventricle segmentation. Neuroimage 54(2), 940–954 (2011)

    Article  Google Scholar 

  2. Rousseau, F., Habas, P.A., Studholme, C.: Human brain labeling using image similarities. In: Proc. IEEE Conference on Computer Vision and Pattern Recognition (2011)

    Google Scholar 

  3. Lee, S., Park, S.H., Shim, H., Yun, I.D., Lee, S.U.: Optimization of local shape and appearance probabilities for segmentation of knee cartilage in 3-D MR images. Computer Vision and Image Understanding 115(12), 1710–1720 (2011)

    Article  Google Scholar 

  4. Top, A., Hamarneh, G., Abugharbieh, R.: Active Learning for Interactive 3D Image Segmentation. In: Fichtinger, G., Martel, A., Peters, T. (eds.) MICCAI 2011, Part III. LNCS, vol. 6893, pp. 603–610. Springer, Heidelberg (2011)

    Chapter  Google Scholar 

  5. Boykov, Y., Funka-Lea, G.: Graph cuts and efficient N-D image segmentation. International Journal of Computer Vision 70(2), 109–131 (2006)

    Article  Google Scholar 

  6. Shim, H., Chang, S., Tao, C., Wang, J., Kwoh, C., Bae, K.: Knee cartilage: efficient and reproducible segmentation on high-spatial-resolution MR images with the semiautomated graph-cut algorithm method. Radiology 251(2), 548–556 (2009)

    Article  Google Scholar 

  7. Grady, L.: Random walks for image segmentation. IEEE Transactions on Pattern Analysis and Machine Intelligence 28(11), 1768–1783 (2006)

    Article  Google Scholar 

  8. Pohle, R., Toennies, K.D.: Segmentation of medical images using adaptive region growing. In: Proc. SPIE M.I. (2001)

    Google Scholar 

  9. Barnes, C., Shechtman, E., Finkelstein, A., Goldman, D.B.: PatchMatch: A randomized correspondence algorithm for structural image editing. In: Proc. SIGGRAPH (2009)

    Google Scholar 

  10. Barnes, C., Shechtman, E., Goldman, D.B., Finkelstein, A.: The generalized PatchMatch correspondence algorithm. In: Daniilidis, K., Maragos, P., Paragios, N. (eds.) ECCV 2010, Part III. LNCS, vol. 6313, pp. 29–43. Springer, Heidelberg (2010)

    Chapter  Google Scholar 

  11. Shim, H., Kwoh, C., Yun, I., Lee, S., Bae, K.: Simultaneous 3-d segmentation of three bone compartments on high resolution knee mr images from osteoarthritis initiative (oai) using graph-cuts. In: Proc. SPIE M.I. (2009)

    Google Scholar 

  12. Rother, C., Kolmogorov, V., Blake, A.: “GrabCut” - Interactive foreground extraction using iterated graph cuts. In: Proc. SIGGRAPH (2004)

    Google Scholar 

  13. Mory, B., Ardon, R.: Non-euclidean image-adaptive radial basis functions for 3D interactive segmentation. In: Proc. International Conference on Computer Vision (2009)

    Google Scholar 

  14. Wang, D., Yan, C., Shan, S., Chen, X.: Active Learning for Interactive Segmentation with Expected Confidence Change. In: Lee, K.M., Matsushita, Y., Rehg, J.M., Hu, Z. (eds.) ACCV 2012, Part I. LNCS, vol. 7724, pp. 790–802. Springer, Heidelberg (2013)

    Chapter  Google Scholar 

  15. Liu, C., Yuen, J., Torralba, A., Sivic, J., Freeman, W.T.: SIFT flow: Dense correspondence across different scenes. In: Forsyth, D., Torr, P., Zisserman, A. (eds.) ECCV 2008, Part III. LNCS, vol. 5304, pp. 28–42. Springer, Heidelberg (2008)

    Chapter  Google Scholar 

  16. Glocker, B., Komodakis, N., Tziritas, G., Navab, N., Paragios, N.: Dense image registration through MRFs and efficient linear programming. Medical Image Analysis 12(6), 731–741 (2008)

    Article  Google Scholar 

  17. Bleyer, M., Rhemann, C., Rother, C.: PatchMatch stereo - stereo matching with slanted support windows. In: Proc. BMVC (2011)

    Google Scholar 

  18. Zhang, H., Fang, T., Chen, X., Zhao, Q., Quan, L.: Partial similarity based nonparametric scene parsing in certain environment. In: Proc. IEEE Conference on Computer Vision and Pattern Recognition (2011)

    Google Scholar 

  19. Gould, S., Zhang, Y.: patchMatchGraph: Building a graph of dense patch correspondences for label transfer. In: Fitzgibbon, A., Lazebnik, S., Perona, P., Sato, Y., Schmid, C. (eds.) ECCV 2012, Part V. LNCS, vol. 7576, pp. 439–452. Springer, Heidelberg (2012)

    Chapter  Google Scholar 

  20. Bai, X., Wang, J., Simons, D., Sapiro, G.: Video snapcut: robust video object cutout using localized classifiers. In: Proc. SIGGRAPH (2009)

    Google Scholar 

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Park, S.H., Yun, I.D., Lee, S.U. (2013). Data-Driven Interactive 3D Medical Image Segmentation Based on Structured Patch Model. In: Gee, J.C., Joshi, S., Pohl, K.M., Wells, W.M., Zöllei, L. (eds) Information Processing in Medical Imaging. IPMI 2013. Lecture Notes in Computer Science, vol 7917. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-642-38868-2_17

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  • DOI: https://doi.org/10.1007/978-3-642-38868-2_17

  • Publisher Name: Springer, Berlin, Heidelberg

  • Print ISBN: 978-3-642-38867-5

  • Online ISBN: 978-3-642-38868-2

  • eBook Packages: Computer ScienceComputer Science (R0)

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