Abstract
The structural microheterogeneity of heparin and heparan sulfate is one of the major reasons for the multifunctionality exhibited by this class of molecules. In a physiological context, these molecules primarily exert their effects extracellularly by mediating key processes of cellular cross-talk and signaling leading to the modulation of a number of different biological activities including development, cell proliferation, and inflammation. This structural diversity is biosynthetically imprinted in a nontemplate-driven manner and may also be dynamically remodeled as cellular function changes. Understanding the structural information encoded in these molecules forms the basis for attempting to understand the complex biology they mediate. This chapter provides an overview of the origin of the structural microheterogeneity observed in heparin and heparan sulfate, and the orthogonal analytical methodologies that are required to help decipher this information.
This is a preview of subscription content, log in via an institution.
Buying options
Tax calculation will be finalised at checkout
Purchases are for personal use only
Learn about institutional subscriptionsReferences
Beccati D, Roy S, Yu F, Gunay NS, Capila I, Lech M, Linhardt RJ, Venkataraman G (2010) Identification of a novel structure in heparin generated by potassium permanganate oxidation. Carbohydr Polymer 82:699–705
Bisio A, Mantegazza A, Urso E, Naggi A, Torri G, Viskov C, Casu B (2007) High-performance liquid chromatographic/mass spectrometric studies on the susceptibility of heparin species to cleavage by heparanase. Semin Thromb Hemost 33:488–495
Canales A, Angulo J, Ojeda R, Bruix M, Fayos R, Lozano R, Gimenez-Gallego G, Martin-Lomas M, Nieto PM, Jimenez-Barbero J (2005) Conformational flexibility of a synthetic glycosylaminoglycan bound to a fibroblast growth factor. FGF-1 recognizes both the (1)C(4) and (2)S(O) conformations of a bioactive heparin-like hexasaccharide. J Am Chem Soc 127:5778–5779
Capila I, Linhardt RJ (2002) Heparin-protein interactions. Angew Chem Int Ed Engl 41:391–412
Casu B, Guerrini M, Naggi A, Torri G, De-Ambrosi L, Boveri G, Gonella S, Ronzoni G (1995) Differentiation of beef and pig mucosal heparins by NMR spectroscopy. Thromb Haemost 74:1205
Casu B, Guerrini M, Naggi A, Torri G, De-Ambrosi L, Boveri G, Gonella S, Cedro A, Ferro L, Lanzarotti E, Paterno M, Attolini M, Valle MG (1996) Characterization of sulfation patterns of beef and pig mucosal heparins by nuclear magnetic resonance spectroscopy. Arzneimittelforschung 46:472–477
Chi L, Wolff JJ, Laremore TN, Restaino OF, Xie J, Schiraldi C, Toida T, Amster IJ, Linhardt RJ (2008) Structural analysis of bikunin glycosaminoglycan. J Am Chem Soc 130:2617–2625
Ernst S, Langer R, Cooney CL, Sasisekharan R (1995) Enzymatic degradation of glycosaminoglycans. Crit Rev Biochem Mol Biol 30:387–444
Faham S, Hileman RE, Fromm JR, Linhardt RJ, Rees DC (1996) Heparin structure and interactions with basic fibroblast growth factor. Science 271:1116–1120
Ferro DR, Provasoli A, Ragazzi M, Casu B, Torri G, Bossennec V, Perly B, Sinay P, Petitou M, Choay J (1990) Conformer populations of L-iduronic acid residues in glycosaminoglycan sequences. Carbohydr Res 195:157–167
Guerrini M, Bisio A, Torri G (2001) Combined quantitative (1)H and (13)C nuclear magnetic resonance spectroscopy for characterization of heparin preparations. Semin Thromb Hemost 27:473–482
Guerrini M, Raman R, Venkataraman G, Torri G, Sasisekharan R, Casu B (2002) A novel computational approach to integrate NMR spectroscopy and capillary electrophoresis for structure assignment of heparin and heparan sulfate oligosaccharides. Glycobiology 12:713–719
Guerrini M, Naggi A, Guglieri S, Santarsiero R, Torri G (2005) Complex glycosaminoglycans: profiling substitution patterns by two-dimensional nuclear magnetic resonance spectroscopy. Anal Biochem 337:35–47
Guerrini M, Guglieri S, Naggi A, Sasisekharan R, Torri G (2007) Low molecular weight heparins: structural differentiation by bidimensional nuclear magnetic resonance spectroscopy. Semin Thromb Hemost 33:478–487
Guerrini M, Beccati D, Shriver Z, Naggi A, Viswanathan K, Bisio A, Capila I, Lansing JC, Guglieri S, Fraser B, Al-Hakim A, Gunay NS, Zhang Z, Robinson L, Buhse L, Nasr M, Woodcock J, Langer R, Venkataraman G, Linhardt RJ, Casu B, Torri G, Sasisekharan R (2008) Oversulfated chondroitin sulfate is a contaminant in heparin associated with adverse clinical events. Nat Biotechnol 26:669–675
Guimond SE, Puvirajesinghe TM, Skidmore MA, Kalus I, Dierks T, Yates EA, Turnbull JE (2009) Rapid purification and high sensitivity analysis of heparan sulfate from cells and tissues: toward glycomics profiling. J Biol Chem 284:25714–25722
Henriksen J, Ringborg LH, Roepstorrf P (2004) On-line size-exclusion chromatography/mass spectrometry of low molecular mass heparin. J Mass Spectrom 39:1305–1312
Juhasz P, Biemann K (1994) Mass spectrometric molecular-weight determination of highly acidic compounds of biological significance via their complexes with basic polypeptides. Proc Natl Acad Sci USA 91:4333–4337
Karamanos NK, Vanky P, Tzanakakis GN, Tsegenidis T, Hjerpe A (1997) Ion-pair high-performance liquid chromatography for determining disaccharide composition in heparin and heparan sulphate. J Chromatogr A 765:169–179
Kuberan B, Lech M, Zhang L, Wu ZL, Beeler DL, Rosenberg RD (2002) Analysis of heparan sulfate oligosaccharides with ion pair-reverse phase capillary high performance liquid chromatography-microelectrospray ionization time-of-flight mass spectrometry. J Am Chem Soc 124:8707–8718
Kuberan B, Beeler DL, Lech M, Wu ZL, Rosenberg RD (2003) Chemoenzymatic synthesis of classical and non-classical anticoagulant heparan sulfate polysaccharides. J Biol Chem 278:52613–52621
Lindahl U (2007) Heparan sulfate-protein interactions – a concept for drug design? Thromb Haemost 98:109–115
Lindahl U, Backstrom G, Hook M, Thunberg L, Fransson LA, Linker A (1979) Structure of the antithrombin-binding site in heparin. Proc Natl Acad Sci USA 76:3198–3202
Lindahl U, Kusche-Gullberg M, Kjellen L (1998) Regulated diversity of heparan sulfate. J Biol Chem 273:24979–24982
Linhardt RJ, Gunay NS (1999) Production and chemical processing of low molecular weight heparins. Semin Thromb Hemost 25(Suppl 3):5–16
Linhardt RJ, Rice KG, Kim YS, Lohse DL, Wang HM, Loganathan D (1988) Mapping and quantification of the major oligosaccharide components of heparin. Biochem J 254:781–787
Linhardt RJ, Loganathan D, al-Hakim A, Wang HM, Walenga JM, Hoppensteadt D, Fareed J (1990) Oligosaccharide mapping of low molecular weight heparins: structure and activity differences. J Med Chem 33:1639–1645
Liu J, Shriver Z, Pope RM, Thorp SC, Duncan MB, Copeland RJ, Raska CS, Yoshida K, Eisenberg RJ, Cohen G, Linhardt RJ, Sasisekharan R (2002) Characterization of a heparan sulfate octasaccharide that binds to herpes simplex virus type 1 glycoprotein D. J Biol Chem 277:33456–33467
Liu H, Zhang Z, Linhardt RJ (2009) Lessons learned from the contamination of heparin. Nat Prod Rep 26:313–321
Liu R, Xu Y, Chen M, Weiwer M, Zhou X, Bridges AS, DeAngelis PL, Zhang Q, Linhardt RJ, Liu J (2010) Chemoenzymatic design of heparan sulfate oligosaccharides. J Biol Chem 285:34240–34249
Myette JR, Shriver Z, Kiziltepe T, McLean MW, Venkataraman G, Sasisekharan R (2002) Molecular cloning of the heparin/heparan sulfate delta 4,5 unsaturated glycuronidase from Flavobacterium heparinum, its recombinant expression in Escherichia coli, and biochemical determination of its unique substrate specificity. Biochemistry 41:7424–7434
Myette JR, Shriver Z, Claycamp C, McLean MW, Venkataraman G, Sasisekharan R (2003) The heparin/heparan sulfate 2-O-sulfatase from Flavobacterium heparinum. Molecular cloning, recombinant expression, and biochemical characterization. J Biol Chem 278:12157–12166
Myette JR, Soundararajan V, Shriver Z, Raman R, Sasisekharan R (2009) Heparin/heparan sulfate 6-O-sulfatase from Flavobacterium heparinum: integrated structural and biochemical investigation of enzyme active site and substrate specificity. J Biol Chem 284:35177–35188
Raman R, Venkataraman G, Ernst S, Sasisekharan V, Sasisekharan R (2003) Structural specificity of heparin binding in the fibroblast growth factor family of proteins. Proc Natl Acad Sci USA 100:2357–2362
Rej R, Jaseja M, Perlin AS (1989) Importance for blood anticoagulant activity of a 2-sulfate group on L-iduronic acid residues in heparin. Thromb Haemost 61:540
Rhomberg AJ, Ernst S, Sasisekharan R, Biemann K (1998) Mass spectrometric and capillary electrophoretic investigation of the enzymatic degradation of heparin-like glycosaminoglycans. Proc Natl Acad Sci USA 95:4176–4181
Rosenberg RD, Lam L (1979) Correlation between structure and function of heparin. Proc Natl Acad Sci USA 76:1218–1222
Saad OM, Leary JA (2003) Compositional analysis and quantification of heparin and heparan sulfate by electrospray ionization ion trap mass spectrometry. Anal Chem 75:2985–2995
Saad OM, Leary JA (2005) Heparin sequencing using enzymatic digestion and ESI-MSn with HOST: a heparin/HS oligosaccharide sequencing tool. Anal Chem 77:5902–5911
Saad OM, Ebel H, Uchimura K, Rosen SD, Bertozzi CR, Leary JA (2005) Compositional profiling of heparin/heparan sulfate using mass spectrometry: assay for specificity of a novel extracellular human endosulfatase. Glycobiology 15:818–826
Salmivirta M, Lidholt K, Lindahl U (1996) Heparan sulfate: a piece of information. FASEB J 10:1270–1279
Sanderson PN, Huckerby TN, Nieduszynski IA (1987) Conformational equilibria of alpha-L-iduronate residues in disaccharides derived from heparin. Biochem J 243:175–181
Shi X, Zaia J (2009) Organ-specific heparan sulfate structural phenotypes. J Biol Chem 284:11806–11814
Shukla D, Liu J, Blaiklock P, Shworak NW, Bai X, Esko JD, Cohen GH, Eisenberg RJ, Rosenberg RD, Spear PG (1999) A novel role for 3-O-sulfated heparan sulfate in herpes simplex virus 1 entry. Cell 99:13–22
Sugahara K, Kitagawa H (2002) Heparin and heparan sulfate biosynthesis. IUBMB Life 54:163–175
Toida T, Yoshida H, Toyoda H, Koshiishi I, Imanari T, Hileman RE, Fromm JR, Linhardt RJ (1997) Structural differences and the presence of unsubstituted amino groups in heparan sulphates from different tissues and species. Biochem J 322(Pt 2):499–506
Venkataraman G, Shriver Z, Raman R, Sasisekharan R (1999) Sequencing complex polysaccharides. Science 286:537–542
Wardrop D, Keeling D (2008) The story of the discovery of heparin and warfarin. Br J Haematol 141:757–763
Wolff JJ, Amster IJ, Chi L, Linhardt RJ (2007) Electron detachment dissociation of glycosaminoglycan tetrasaccharides. J Am Soc Mass Spectrom 18:234–244
Yates EA, Santini F, Guerrini M, Naggi A, Torri G, Casu B (1996) 1H and 13C NMR spectral assignments of the major sequences of twelve systematically modified heparin derivatives. Carbohydr Res 294:15–27
Acknowledgement
The authors thank Dr. Daniela Beccati for providing Fig. 4.
Author information
Authors and Affiliations
Corresponding author
Editor information
Editors and Affiliations
Rights and permissions
Copyright information
© 2012 Springer-Verlag Berlin Heidelberg
About this chapter
Cite this chapter
Shriver, Z., Capila, I., Venkataraman, G., Sasisekharan, R. (2012). Heparin and Heparan Sulfate: Analyzing Structure and Microheterogeneity. In: Lever, R., Mulloy, B., Page, C. (eds) Heparin - A Century of Progress. Handbook of Experimental Pharmacology, vol 207. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-642-23056-1_8
Download citation
DOI: https://doi.org/10.1007/978-3-642-23056-1_8
Published:
Publisher Name: Springer, Berlin, Heidelberg
Print ISBN: 978-3-642-23055-4
Online ISBN: 978-3-642-23056-1
eBook Packages: Biomedical and Life SciencesBiomedical and Life Sciences (R0)