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DArTFest DNA Array—Applications and Perspectives for Grass Genetics, Genomics and Breeding

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Breeding strategies for sustainable forage and turf grass improvement

Abstract

DArTFest is a DNA microarray developed for the Festuca-Lolium complex, consisting of 7,680 probes. As it offers high-throughput and low-cost screening of thousands of genomic loci, it has been successfully used in a number of projects. These include the analysis of interspecific, intraspecific and intravarietal genetic variation, genetic mapping, assigning markers to chromosomal segments, comparative analysis of the Festuca and Lolium genomes against model plant species rice and Brachypodium, an analysis of genomic constitution of Festulolium cultivars and QTL mapping of agronomically important traits such as resistance against crown rust and frost tolerance. In order to facilitate the use of DArT markers linked to traits of interests, a large number of them has been already sequenced and conversion to PCR-based markers is in progress.

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References

  • Anhalt UCM, Heslop-Harrison P, Byrne S, Guillard A, Barth S (2008) Segregation distortion in Lolium: evidence for genetic effects. Theor Appl Genet 117:297–306

    Article  PubMed  CAS  Google Scholar 

  • Baird JH, Kopecký D, Lukaszewski AJ, Green RL, Bartoš J, Doležel J (2011) Genetic diversity of turf-type tall fescue using Diversity Arrays technology. Crop Science 52:408–412

    Google Scholar 

  • Bartoš J, Sandve SR, Kölliker R, Kopecký D, Christelová P, Stočes S, Østrem L, Larsen A, Kilian A, Rognli OA, Doležel J (2011) Genetic mapping of DArT markers in the Festuca-Lolium complex and their use in freezing tolerance association analysis. Theor Appl Genet 122:1133–1147

    Article  PubMed  Google Scholar 

  • Kopecký D, Bartoš J, Lukaszewski AJ, Baird JH, Černoch V, Kölliker R, Rognli OA, Blois H, Caig V, Lübberstedt T, Studer B, Shaw P, Doležel J, Kilian A (2009) Development and mapping of DArT markers within the–Festuca—Lolium complex. BMC Genomics 10:473

    Article  PubMed  Google Scholar 

  • Kopecký D, Havránková M, Loureiro J, Castro S, Lukaszewski AJ, Bartoš J, Kopecká J, Doležel J (2010) Physical distribution of homoeologous recombination in individual chromosomes of Lolium multiflorum/Festuca pratensis substitutions. Cytogen Genome Res 129:162–172

    Article  Google Scholar 

  • Kopecký D, Bartoš J, Christelová P, Černoch V, Kilian A, Doležel J (2011) Genomic constitution of Festuca´Lolium hybrids revealed by the DArTFest array. Theor Appl Genet 122:355–363

    Article  PubMed  Google Scholar 

  • Studer B, Boller B, Herrmann D, Bauer E, Posselt UK, Widmer F, Kölliker R (2006) Genetic mapping reveals a single major QTL for bacterial wilt resistance in Italian ryegrass (Lolium multiflorum Lam.). Theor Appl Genet 113:661–671

    Article  PubMed  CAS  Google Scholar 

  • Tomaszewski C, Byrne S, Foito A, Kildea S, Kopecky D, Dolezel J, Heslop-Harrison JS, Stewart D and Barth S (2011) Genetic linkage mapping in an F2 perennial ryegrass population using DArT markers. Plant Breeding 131:345–349

    Google Scholar 

  • Wenzl P, Li H, Carling J, Zhou M, Raman H, Paul E, Hearnden P, Maier C, Xia L, Caig V, Ovesná J, Cakir M, Poulsen D, Wang J, Raman R, Smith KP, Muehlbauer GJ, Chalmers KJ, Kleinhofs A, Huttner E, Kilian A (2006) A high-density consensus map of barley linking DArT markers to SSR, RFLP and STS loci and agricultural traits. BMC Genomics 7:206

    Article  PubMed  Google Scholar 

Download references

Acknowledgements

This work has been supported by the Ministry of Education, Youth and Sports of the Czech Republic and the European Regional Development Fund (Operational Programme Research and Development for Innovations No. CZ.1.05/2.1.00/01.0007) and by the Ministry of Agriculture of the Czech Republic (grant award NAZV QH71267).

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Correspondence to D. Kopecký .

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Kopecký, D. et al. (2013). DArTFest DNA Array—Applications and Perspectives for Grass Genetics, Genomics and Breeding. In: Barth, S., Milbourne, D. (eds) Breeding strategies for sustainable forage and turf grass improvement. Springer, Dordrecht. https://doi.org/10.1007/978-94-007-4555-1_14

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