Abstract
Colonial Volvocales (green algae) are a model lineage for the study of the evolution of sexual reproduction because isogamy, anisogamy, and oogamy are recognized within the closely related group, and several mating type (sex)-specific genes were identified in the closely related unicellular Chlamydomonas reinhardtii during the past century. In 2006, we first identified a sex-specific gene within the colonial Volvocales using the anisogamous colonial volvocalean alga Pleodorina starrii, namely, a male-specific gene called “OTOKOGI,” which is a homologue of the minus mating type-determining gene MID of the isogamous C. reinhardtii. Thus, it was speculated that the derived or minus mating type of C. reinhardtii is homologous to the male in the anisogamous/oogamous members of the colonial Volvocales. The discovery of the male-specific gene facilitated comparative studies of the mating-type locus (MT) (primitive sex chromosomal region) because it must be localized in MT. Recently, our international research group determined the genome sequence of MT in the oogamous Volvox carteri. V. carteri MT shows remarkable expansion and divergence relative to that from C. reinhardtii. Five new female-limited “HIBOTAN” genes and ten male-limited genes (including “OTOKOGI”) were identified in V. carteri MT. These observations suggest that the origins of femaleness and maleness are principally affected by the evolution of MT, which has undergone a remarkable expansion and gain of new male- and female-limited genes. Our recent results regarding the evolution of the volvocalean MT gene MAT3/RB are also discussed in relationship to the evolution of male–female sexual dimorphism.
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1 Introduction
There is a great deal of interest in sexual reproduction because we are the progeny of our parents who produced sperm and immotile eggs (oogamy), which differ markedly in size and motility. In contrast, primitive organisms sometimes exhibit isogamy (equally sized gametes); in this case, we cannot distinguish between males and females. Therefore, evolutionary transition from isogamy to anisogamy (small and large motile gametes) to oogamy (Bold and Wynne 1985), or the origin of male and female sexes, is one of the most interesting issues in biological research. Although such male–female sexual dimorphism has arisen repeatedly in the evolution of eukaryotes (Kirk 2006), no molecular genetic evidence had been reported for the evolutionary link between male and female and mating types of isogamy until our recent study (Nozaki et al. 2006a), possibly because animals and land plants have no extant isogamous relatives (Rokas et al. 2005; Laurin-Lemay et al. 2012).
Colonial volvocalean algae represent a useful model lineage for the study of such an evolutionary link because isogamy, anisogamy, and oogamy can be recognized within the closely related organisms (Nozaki et al. 2000; Herron et al. 2009), and several mating type-specific genes had been identified in the related unicellular model species, Chlamydomonas reinhardtii (Ferris and Goodenough 1994, 1997). This review focuses on studies of sexual reproduction of the colonial Volvocales as well as the related C. reinhardtii.
2 Sexual Reproduction in the Colonial Volvocales
Figure 19.1 presents a summary of the vegetative organization and modes of sexual reproduction in volvocine algae. It is interesting that, in this lineage, the primitive colonial organization also has a primitive type of sexual reproduction (Nozaki and Ito 1994).
In the colonial volvocalean Gonium pectorale, vegetative spheroids are flattened with 8 or 16 cells, and sexual reproduction is isogamous with no differentiation between female and male gametes. Both the two conjugating isogametes bear a mating papilla, which is called the bilateral mating papilla (Nozaki 1984, 1996; Mogi et al. 2012) (Figs. 19.1, 19.2). Plasmogamy is initiated by the union of the tips of the mating papillae from mating-type plus and minus gametes.
In Eudorina elegans, vegetative spheroids are spheroidal with 16 or 32 cells, and sexual reproduction is anisogamous with flagellate female and male gametes. In sexual reproduction, bundles of male gametes called “sperm packets” are formed. Sperm packets swim to a female spheroid and dissociate into individual male gametes that penetrate the female for gametic union (Goldstein 1964; Nozaki 1983, 1996) (Fig. 19.3).
Volvox carteri is oogamous and has more than 500 cells in a spheroid. When inducing sexual reproduction, dwarf male and special female sexual spheroids are formed. The male spheroid produces sperm packets that swim to the female spheroid, which contains a number of eggs (Nozaki 1988) (Fig. 19.4). V. carteri shows prominent male–female differentiation (Kirk 1998; Nozaki 1996).
3 Determining the Evolutionary Process of Sexual Reproduction and Tracing Gender-Specific Genes of the Colonial Volvocales
To determine the evolutionary process of the sexual reproduction characteristics in colonial Volvocales, detailed and robust phylogenetic relationships of the members are needed. Therefore, we carried out cladistic analysis of morphological characteristics of vegetative and reproductive phases (Nozaki and Ito 1994; Nozaki et al. 1996) and multigene phylogeny of plastid protein-coding genes (Nozaki et al. 2000; Nozaki 2003). Based on our phylogenetic analyses of morphological and multigene sequence data, a possible evolutionary scenario of sexual reproduction could be deduced. In relationship to the increase in spheroid cell number, female and male genders evolved with the formation of sperm packets from isogamy with bilateral mating papillae (Fig. 19.5). Therefore, it was of interest to determine the genetic basis underlying this evolution of sex. However, mating type-specific genes had not been identified within colonial Volvocales, despite studies of the mating type-specific genes, including the sex-determining minus dominance (MID) gene in the close relative C. reinhardtii (Ferris and Goodenough 1994, 1997).
There are two possible explanations for difficulties in identifying mating type-specific genes from colonial Volvocales. The first is the rapid evolution of the sex-related genes. Ferris et al. (1997) could not isolate MID homologues from G. pectorale and V. carteri based on Southern blotting, and they discussed the rapid evolution of sex-related genes. The second is loss of fertility or sexual activity during long-term maintenance of culture strains (Coleman 1975). Strains obtained from the culture collections that have been maintained in living culture for more than 10 years cannot generally be induced to reproduce sexually to study sexual reproduction, especially in anisogamous and oogamous species. Therefore, we used newly designed degenerate polymerase chain reaction (PCR) primers and new strains of the anisogamous volvocalean Pleodorina starrii to identify gender-specific genes. P. starrii was described by Nozaki et al. (2006a) based on samples collected in Japanese lakes in 2000–2001, and it is heterothallic with sperm packet formation occurring even within the male strain (Nozaki et al. 2006a, b).
4 Problems Regarding the Evolutionary Link Between Isogametic Mating Types and Male–Female Differentiation
In volvocine algae, sex is determined by a single mating-type locus (MT) with two haplotypes that specify sexual differentiation. Although MT segregates as a single Mendelian trait, it is a complex genomic region containing both shared and sex-limited genes that are rearranged with respect to each other and do not undergo meiotic recombination (Umen 2011). Sexual reproduction of the unicellular volvocalean C. reinhardtii is isogametic, with plus and minus mating types. The minus mating type of this species represents a “dominant sex” because occasionally produced diploid cells exhibit the minus mating phenotype (Ebersold 1967); when the minus mating type-determining gene MID is lacking, the phenotype of the sex changes from minus to plus, forming a fertilization tubule (Goodenough et al. 1982). Therefore, mating type minus in C. reinhardtii can be considered a “derived type of sex.” However, the evolutionary link between isogamous mating type plus/minus and female–male differentiation cannot be deduced, even based on comparison of modes of uniparental inheritance of the organelle genomes. In C. reinhardtii, the plastid genome is inherited from the plus mating type parent, whereas the mitochondrial genome is inherited from the minus parent (Boynton et al. 1987). In contrast, both the plastid and mitochondrial genomes are inherited from the female parent in the oogamous alga V. carteri (Adams et al. 1990). Thus, homologues of some C. reinhardtii mating type-specific genes were needed to be identified in the anisogamous or oogamous members of colonial Volvocales.
5 Discovery of the Male-Specific Gene “OTOKOGI”
The male-specific gene isolated from P. starrii is a homologue of the MID gene of C. reinhardtii (Nozaki et al. 2006a). The MID gene is located in the rearranged (R) domain of the minus MT or primitive sex chromosome in C. reinhardtii (Ferris and Goodenough 1994). The R domain in the sex chromosome is different between plus and minus mating types. To isolate the MID gene in P. starrii, new degenerate primers were designed, and RNA was extracted from P. starrii male cultures that produced abundant male gametes in nitrogen-deficient medium (Nozaki et al. 2006a).
The new male-specific gene (PlestMID) is called “OTOKOGI,” meaning “manliness” or “chivalry” in Japanese (Nozaki et al. 2006a; Nozaki 2008). Figure 19.6 shows the amino acid alignment of the Pleodorina MID gene, i.e., “OTOKOGI,” and two Chlamydomonas MID genes. These three genes have essentially the same molecular structure with an RWP-RK domain (Fig. 19.6). Southern blotting analysis indicated that both “OTOKOGI” and its pseudogene are present in the nuclear genome of the male strain but lacking in the female strain (Nozaki et al. 2006a). Genomic PCR of six Pleodorina strains also demonstrated that “OTOKOGI” and its pseudogene are present only in male strains (Nozaki et al. 2006a). Using antibody staining, “OTOKOGI” protein was shown to be accumulated in the male gametic nuclei (Nozaki et al. 2006a) (Fig. 19.7). Therefore, the Pleodorina “OTOKOGI” gene may participate in differentiation of male gametes, and thus the dominant or minus mating type of the isogamous C. reinhardtii is homologous to the male in the anisogamous volvocalean Pleodorina. In Volvocales, the derived type of sex evolved to male, whereas the basic type of sex evolved to female.
6 Female-Limited “HIBOTAN” Genes Resolved in the Volvox carteri Genome
Even though the evolutionary link between male–female differentiation and isogametic mating types was determined (Nozaki et al. 2006a), genes contributing to the evolution of femaleness and maleness from isogametic mating types remained unclear. In colonial Volvocales, the female sex evolved from the original type of sex (plus mating type) in isogamy (Nozaki et al. 2006a), and female-specific genes are lacking or rare in higher animals and land plants. Thus, the female-specific gene “HIBOTAN” may be lacking in the evolution of femaleness of colonial Volvocales. Genomic data regarding MT or the sex chromosomal region of the anisogamous or oogamous members were needed.
In 2010, we published a paper on the genome analyses of the MT of V. carteri that exhibits the production of eggs and sperm (Ferris et al. 2010). This publication was based on co-research between the United States (USA) and Japan, which originally started in 2005 when Dr. Patrick Ferris came to Japan and became a guest researcher at the Graduate School of Science, University of Tokyo. The Japanese team contributed to cloning of the V. carteri “OTOKOGI” gene and construction of a male V. carteri BAC library.
The V. carteri MT shows remarkable expansion and divergence relative to that from C. reinhardtii, which has equal-sized gametes, and is about five times larger and contains more genes than the C. reinhardtii MT. Our transcriptome analysis using next-generation sequencing identified five new female-limited “HIBOTAN” genes and ten male-limited genes, including “OTOKOGI,” in the MT locus of V. carteri (Fig. 19.8). None of the five “HIBOTAN” genes was identified in the C. reinhardtii MT (Ferris et al. 2010). Thus, the origins of femaleness and maleness are principally affected by the evolution of the MT or sex chromosome that has undergone remarkable expansion and gain of new male- and female-limited genes. However, our study (Ferris et al. 2010) was based on the comparison of only two evolutionary extremes, the isogamous unicellular Chlamydomonas and the oogamous multicellular Volvox (Fig. 19.5). Thus, genome information on the MT from intermediate colonial Volvocales is needed to determine the evolutionary significance of expansion of the MT as well as the male- and female-limited genes newly identified in V. carteri (Charlesworth and Charlesworth 2010).
7 Origin of the Gender-Based Divergence of the Mating Locus Gene MAT3 from Oogamous Volvox carteri
Our recent comparative study of MT from oogamous V. carteri, with MT from an isogamous species, C. reinhardtii, revealed major differences in the size and sex-based differentiation of MT genes (Ferris et al. 2010). V. carteri MT was found to show a much higher degree of sex-based differentiation in its shared genes (those with an allele in both mating haplotypes or sexes). Shared genes that have become masculinized and feminized in sequence or expression, as occurred in V. carteri, are candidates for contributing to male–female sexual dimorphism. However, there had been no investigations of MT genes in the context of the isogamy to anisogamy/oogamy transition in volvocine algae other than the previously described comparison of C. reinhardtii and V. carteri (Ferris et al. 2010; Charlesworth and Charlesworth 2010).
One candidate regulator of gamete size is the mating locus gene MAT3, which encodes a homologue of the retinoblastoma (RB) tumor suppressor protein. In C. reinhardtii, MAT3 is closely linked to MT and regulates cell size and cell-cycle progression (Umen and Goodenough 2001; Fang et al. 2006). In contrast to C. reinhardtii, in which the minus and plus MAT3 alleles are nearly identical and function interchangeably (Umen and Goodenough 2001; Merchant et al. 2007), high degrees of male–female sequence differentiation and sex-regulated alternative splicing were observed for V. carteri MAT3 (Ferris et al. 2010). These observations led Ferris et al. (2010) to suggest that MAT3 homologues may be related to control of gamete size in colonial volvocine algae, as predicted earlier by the gamete size regulator recruitment model for the evolution of anisogamy/oogamy from isogamous mating types (Charlesworth 1978). Thus, Hiraide et al. (2013) sequenced the full-length coding regions of MAT3 from plus and minus mating types of isogamous Gonium pectorale and Yamagishiella unicocca, from males and females of anisogamous Eudorina sp. and Pleodorina starrii, and from males and females of oogamous Volvox africanus. In contrast to V. carteri, MAT3 homologues from the five colonial species examined had almost identical nucleotide sequences between the two sexes (Fig. 19.9). Our phylogenetic analysis of MAT3 sequences suggested that the extensive MAT3 divergence in the V. carteri lineage may have occurred recently in the ancestor of the three V. carteri forms after their divergence from the anisogamous lineage containing P. starrii and Eudorina sp. (Fig. 19.10). These observations suggest the roles of genetic determinants other than or in addition to MAT3 in the evolution of anisogamy in colonial volvocalean algae.
8 Conclusions
The considerable expansion of oogamous V. carteri MT is based mostly on the increase in the noncoding DNA region, but V. carteri MT contains more coding regions or genes than C. reinhardtii MT (Ferris et al. 2010). Similar expansion of noncoding DNA regions was recently recognized in the mitochondrial and plastid genomes from colonial Volvocales (Smith and Lee 2009, 2010; Hamaji et al. 2013; Smith et al. 2013). Smith et al. (2013) demonstrated that ratios of noncoding DNA regions in the mitochondrial and plastid genomes increase in relationship to the increase in spheroid cell number (from unicellular Chlamydomonas to Gonium to Pleodorina to Volvox) (see Fig. 19.1). This increase may be explained by the mutational hazard hypothesis (Lynch 2007), which argues that genome expansion is a product of a low effective population size (Ne), which results in increased random genetic drift, or a low mutation rate (μ), which reduces the burden of harboring excess DNA. Therefore, a gradual increase in MT size as a function of the increase in spheroid cell number, which may result in a decrease in Ne, may also be considered within colonial Volvocales. However, the origins and evolution of the many gender-specific genes found in V. carteri MT remain unexplained on the basis of the present limited data from colonial volvocalean MT.
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This work was supported by the MEXT/JSPS KAKENHI (grant numbers 24112707 and 24247042 to H.N.).
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Nozaki, H. (2014). Origin of Female/Male Gender as Deduced by the Mating-Type Loci of the Colonial Volvocalean Greens. In: Sawada, H., Inoue, N., Iwano, M. (eds) Sexual Reproduction in Animals and Plants. Springer, Tokyo. https://doi.org/10.1007/978-4-431-54589-7_19
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