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Deconfounding the Effects of Resting State Activity on Task Activation Detection in fMRI

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Multimodal Brain Image Analysis (MBIA 2012)

Part of the book series: Lecture Notes in Computer Science ((LNIP,volume 7509))

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Abstract

Inferring brain activation from functional magnetic resonance imaging (fMRI) data is greatly complicated by the presence of strong noise. Recent studies suggest that part of the noise in task fMRI data actually pertains to ongoing resting state (RS) brain activity. Due to the sporadic nature of RS temporal dynamics, pre-specifying temporal regressors to reduce the confounding effects of RS activity on task activation detection is far from trivial. In this paper, we propose a novel approach that exploits the intrinsic task-rest relationships in brain activity for addressing this challenging problem. With an approximate task activation pattern serving as a seed, we first infer areas in the brain that are intrinsically connected to this seed from RS-fMRI data. We then apply principal component analysis to extract the RS component within the task fMRI time courses of the identified intrinsically-connected brain areas. Using the learned RS modulations as confound regressors, we re-estimate the task activation pattern, and repeat this process until convergence. On real data, we show that removal of the estimated RS modulations from task fMRI data significantly improves activation detection. Our results thus provide further support for the presence of continual RS activity superimposed on task fMRI response.

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References

  1. Friston, K.J., Holmes, A.P., Worsley, K.J., Poline, J.B., Frith, C.D., Frackowiak, R.S.J.: Statistical Parametric Maps in Functional Imaging: A General Linear Approach. Hum. Brain Mapp. 2, 189–210 (1995)

    Google Scholar 

  2. Fox, M.D., Raichle, M.E.: Spontaneous Fluctuations in Brain Activity Observed with Functional Magnetic Resonance Imaging. Nat. Rev. Neurosci. 8, 700–711 (2007)

    Google Scholar 

  3. Fox, M.D., Snyder, A.Z., Vincent, J.L., Raichle, M.E.: Intrinsic Fluctuations within Cortical Systems Account for Intertrial Variability in Human Behaviour. Neuron 56, 171–184 (2007)

    Google Scholar 

  4. Smith, S.M., Fox, P.T., Miller, K.L., Glahn, D.C., Fox, P.M., Mackay, C.E., Filippini, N., Watkins, K.E., Toro, R., Laird, A.R., Beckmann, C.F.: Correspondence of the Brain’s Functional Architecture During Activation and Rest. Proc. Natl. Acad. Sci. 106, 13040–13045 (2009)

    Google Scholar 

  5. Ng, B., Abugharbieh, R., Varoquaux, G., Poline, J.B., Thirion, B.: Connectivity-Informed fMRI Activation Detection. In: Fichtinger, G., Martel, A., Peters, T. (eds.) MICCAI 2011, Part II. LNCS, vol. 6892, pp. 285–292. Springer, Heidelberg (2011)

    Chapter  Google Scholar 

  6. Honey, C.J., Thivierge, J.P., Sporns, O.: Can Structure Predict Function in the Human Brain? NeuroImage 52, 766–776 (2010)

    Google Scholar 

  7. Damoiseaux, J.S., Greicius, M.D.: Greater than the Sum of its Parts: A Review of Studies Combining Structural Connectivity and Resting-state Functional Connectivity. Brain Struct. Funct. 213, 525–533 (2009)

    Google Scholar 

  8. Biswal, B., Yetkin, F.Z., Haughton, V.M., Hyde, J.S.: Functional Connectivity in the Motor Cortex of Resting Human Brain Using Echo-planar MRI. Magn. Reson. Med. 34, 537–541 (1995)

    Google Scholar 

  9. Ng, B., Hamarneh, G., Abugharbieh, R.: Modeling Brain Activation in fMRI Using Group MRF. IEEE Trans. Med. Imaging 31, 1113–11123 (2012)

    Google Scholar 

  10. Nichols, T., Hayasaka, S.: Controlling the Familywise Error Rate in Functional Neuroimaging: A Comparative Review. Stat. Methods Med. Research 12, 419–446 (2003)

    Google Scholar 

  11. Benjamini, Y., Hochberg, Y.: Controlling the False Discovery Rate: A Practical and Powerful Approach to Multiple Testing. J. Royal Stat. Soc. Series B 57, 125–133 (1995)

    MathSciNet  Google Scholar 

  12. McKeown, M.J., Makeig, S., Brown, G.G., Jung, T.-P., Kindermann, S.S., Bell, A.J., Sejnowski, T.J.: Analysis of fMRI Data by Blind Separation into Independent Spatial Components. Hum. Brain Mapp. 6, 160–188 (1998)

    Article  Google Scholar 

  13. Tucholka, A., Thirion, B., Perrot, M., Pinel, P., Mangin, J.-F., Poline, J.-B.: Probabilistic Anatomo-Functional Parcellation of the Cortex: How Many Regions? In: Metaxas, D., Axel, L., Fichtinger, G., Székely, G. (eds.) MICCAI 2008, Part II. LNCS, vol. 5242, pp. 399–406. Springer, Heidelberg (2008)

    Chapter  Google Scholar 

  14. Thyreau, B., Thirion, B., Flandin, G., Poline, J.B.: Anatomo-functional Description of the Brain: A Probabilistic Approach. In: 31st IEEE International Conference on Acoustics, Speech, and Signal Processing, pp. 1109–1112 (2006)

    Google Scholar 

  15. Van Den Heuvel, M., Mandl, R., Hulshoff Pol, H.: Normalized Cut Group Clustering of Resting-state fMRI Data. PLoS ONE 3, e2001 (2008)

    Google Scholar 

  16. Liu, Z., Zhang, N., Chen, W., He, B.: Mapping the Bilateral Visual Integration by EEG and fMRI. NeuroImage 46, 989–997 (2009)

    Article  Google Scholar 

  17. Clare, S.: Magnetic Resonance Imaging of Brain Function. Methods Enzymol. 385, 134–148 (2004)

    Google Scholar 

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Yoldemir, B., Ng, B., Abugharbieh, R. (2012). Deconfounding the Effects of Resting State Activity on Task Activation Detection in fMRI. In: Yap, PT., Liu, T., Shen, D., Westin, CF., Shen, L. (eds) Multimodal Brain Image Analysis. MBIA 2012. Lecture Notes in Computer Science, vol 7509. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-642-33530-3_5

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  • DOI: https://doi.org/10.1007/978-3-642-33530-3_5

  • Publisher Name: Springer, Berlin, Heidelberg

  • Print ISBN: 978-3-642-33529-7

  • Online ISBN: 978-3-642-33530-3

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