Abstract
This short chapter, meant as a general introduction to the book, briefly retraces the development of DNA arrays in the early 1990s, the advent of actual microarrays in 1995 and the rapid development of expression profiling in the following years. A number of early references and some original illustrations provide the specific flavour of these beginnings. A discussion on why this technology was both sorely needed and technically within reach by this time leads to an outline of the current major types of DNA arrays and, beyond, on the implementation of this approach for proteins, peptides, tissues and other entities. Finally, the organisation of the book is briefly presented.
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References
Adams MD, Kelley JM, Gocayne JD, Dubnick M, Polymeropoulos MH, Xiao H, Merril CR, Wu A, Olde B, Moreno RF et al (1991) Complementary DNA sequencing: expressed sequence tags and human genome project. Science 252:1651–1656
Amemiya Y, Miyahara J (1988) Imaging plate illuminates many fields. Nature 336:89–90
Chang SH, Han JL, Tseng SY, Lee HY, Lin CW, Lin YC, Jeng WY, Wang AH, Wu CY, Wong CH (2010) Glycan array on aluminum oxide-coated glass slides through phosphonate chemistry. J Am Chem Soc 132:13371–13380
Chen JJW, Wu R, Yang PC, Huang JY, Sher YP, Han MH, Kao WC, Lee PJ, Chiu TF, Chang F, Chu YW, Wu CW, Peck K (1998) Profiling expression patterns and isolating differentially expressed genes by cDNA microarray system with colorimetry detection. Genomics 51:313–324
Craig AG, Nizetic D, Hoheisel JD, Zehetner G, Lehrach H (1990) Ordering of cosmid clones covering the herpes simplex virus type I (HSV-I) genome: a test case for fingerprinting by hybridisation. Nucleic Acids Res 18:2653–2660
Gress TM, Hoheisel JD, Lennon GG, Zehetner G, Lehrach H (1992) Hybridization fingerprinting of high-density cDNA-library arrays with cDNA pools derived from whole tissues. Mamm Genome 3:609–661
Hilhorst R, Houkes L, van den Berg A, Ruijtenbeek R (2009) Peptide microarrays for detailed, high-throughput substrate identification, kinetic characterization, and inhibition studies on protein kinase A. Anal Biochem 387:150–161
International HapMap Consortium (2005) A haplotype map of the human genome. Nature 437:1299–1320
Joos T, Bachmann J (2009) Protein microarrays: potentials and limitations. Front Biosci 14:4376–4385
Khrapko KR, Lysov YuP, Khorlin AA, Ivanov IB, Yershov GM, Vasilenko SK, Florentiev VL, Mirzabekov AD (1991) A method for DNA sequencing by hybridization with oligonucleotide matrix. DNA Seq 1:375–388
Kononen J, Bubendorf L, Kallioniemi A, Bärlund M, Schraml P, Leighton S, Torhorst J, Mihatsch MJ, Sauter G, Kallioniemi OP (1998) Tissue microarrays for high-throughput molecular profiling of tumor specimens. Nat Med 4:844–847
Lennon GG, Lehrach H (1991) Hybridization analyses of arrayed cDNA libraries. Trends Genet 7:314–317
Michiels F, Craig AG, Zehetner G, Smith GP, Lehrach H (1987) Molecular approaches to genome analysis: a strategy for the construction of ordered overlapping clone libraries. Comput Appl Biosci 3:203–210
Nguyen C, Rocha D, Granjeaud S, Baldit M, Bernard K, Naquet P, Jordan BR (1995) Differential gene expression in the murine thymus assayed by quantitative hybridization of arrayed cDNA clones. Genomics 29:207–215
Oliver SG, van der Aart QJ, Agostoni-Carbone ML, Aigle M, Alberghina L, Alexandraki D, Antoine G, Anwar R, Ballesta JP, Benit P et al (1992) The complete DNA sequence of yeast chromosome III. Nature 357:38–46
Pease AC, Solas D, Sullivan EJ, Cronin MT, Holmes CP, Fodor SP (1994) Light-generated oligonucleotide arrays for rapid DNA sequence analysis. Proc Natl Acad Sci USA 91:5022–5026
Redon R, Ishikawa S, Fitch KR et al (2006) Global variation in copy number in the human genome. Nature 444:444–454
Schena M, Shalon D, Davis RW, Brown PO (1995) Quantitative monitoring of gene expression patterns with a complementary DNA microarray. Science 270:467–470
Schena M, Shalon D, Heller R, Chai A, Brown PO, Davis RW (1996) Parallel human genome analysis: microarray-based expression monitoring of 1000 genes. Proc Natl Acad Sci USA 93:10614–10619
Southern EM, Maskos U, Elder JK (1992) Analyzing and comparing nucleic acid sequences by hybridization to arrays of oligonucleotides: evaluation using experimental models. Genomics 13:1008–1017
Wu N, Castel D, Debily MA, Vigano MA, Alibert O, Mantovani R, Iljin K, Romeo PH, Gidrol X (2011) Large scale RNAi screen reveals that the inhibitor of DNA binding 2 (ID2) protein is repressed by p53 family member p63 and functions in human keratinocyte differentiation. J Biol Chem 286:20870–20879
Yu X, Schneiderhan-Marra N, Joos TO (2010) Protein microarrays for personalized medicine. Clin Chem 56:376–387
Zhao N, Hashida H, Takahashi N, Misumi Y, Sakaki Y (1995) High-density cDNA filter analysis: a novel approach for large-scale, quantitative analysis of gene expression. Gene 156:207–213
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© 2012 Springer-Verlag Berlin Heidelberg
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Jordan, B. (2012). The Microarray Paradigm and Its Various Implementations. In: Jordan, B. (eds) Microarrays in Diagnostics and Biomarker Development. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-642-28203-4_1
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DOI: https://doi.org/10.1007/978-3-642-28203-4_1
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