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Algebraic and Numeric Biology pp 57–75Cite as

MABSys: Modeling and Analysis of Biological Systems

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Part of the book series: Lecture Notes in Computer Science ((LNTCS,volume 6479))

Abstract

We present the MABSys package which gathers, as much as possible, some functions to carry out the modeling of biochemical reaction networks, their qualitative analysis and the exact simplification of systems of ordinary differential equations. The main functions are illustrated with examples including the corresponding commands. Then we discuss Tyson’s negative feedback oscillator model and the parameters values for which this system oscillates.

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Author information

Authors and Affiliations

  1. University of Lille I, LIFL, Villeneuve d’Ascq, France

    François Lemaire & Asli Ürgüplü

Authors
  1. François Lemaire
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  2. Asli Ürgüplü
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Editor information

Editors and Affiliations

  1. Computational Biology Research Centre (CBRC), National Institute of Advanced Industrial Science and Technology (AIST), 135-0064, Tokyo, Japan

    Katsuhisa Horimoto

  2. Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology, 135-0064, Tokyo, Japan

    Masahiko Nakatsui

  3. Research Institute for Symbolic Computation(RISC), Johannes Kepler University of Linz, 4040, Linz, Austria

    Nikolaj Popov

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Lemaire, F., Ürgüplü, A. (2012). MABSys: Modeling and Analysis of Biological Systems. In: Horimoto, K., Nakatsui, M., Popov, N. (eds) Algebraic and Numeric Biology. Lecture Notes in Computer Science, vol 6479. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-642-28067-2_4

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  • DOI: https://doi.org/10.1007/978-3-642-28067-2_4

  • Publisher Name: Springer, Berlin, Heidelberg

  • Print ISBN: 978-3-642-28066-5

  • Online ISBN: 978-3-642-28067-2

  • eBook Packages: Computer ScienceComputer Science (R0)

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