MABSys: Modeling and Analysis of Biological Systems

  • François Lemaire
  • Asli Ürgüplü
Conference paper

DOI: 10.1007/978-3-642-28067-2_4

Part of the Lecture Notes in Computer Science book series (LNCS, volume 6479)
Cite this paper as:
Lemaire F., Ürgüplü A. (2012) MABSys: Modeling and Analysis of Biological Systems. In: Horimoto K., Nakatsui M., Popov N. (eds) Algebraic and Numeric Biology. Lecture Notes in Computer Science, vol 6479. Springer, Berlin, Heidelberg

Abstract

We present the MABSys package which gathers, as much as possible, some functions to carry out the modeling of biochemical reaction networks, their qualitative analysis and the exact simplification of systems of ordinary differential equations. The main functions are illustrated with examples including the corresponding commands. Then we discuss Tyson’s negative feedback oscillator model and the parameters values for which this system oscillates.

Keywords

software design systems of ordinary differential equations qualitative analysis 

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Copyright information

© Springer-Verlag Berlin Heidelberg 2012

Authors and Affiliations

  • François Lemaire
    • 1
  • Asli Ürgüplü
    • 1
  1. 1.University of Lille I, LIFLVilleneuve d’AscqFrance

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