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Pyicos: A Flexible Tool Library for Analyzing Protein-Nucleotide Interactions with Mapped Reads from Deep Sequencing

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Book cover Bioinformatics for Personalized Medicine (JBI 2010)

Part of the book series: Lecture Notes in Computer Science ((LNBI,volume 6620))

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Abstract

Deep DNA or RNA sequencing and posterior mapping to a reference sequence is becoming a standard procedure in molecular biology research. Analyzing millions of mapped reads is a challenging task that doesn’t have a unique solution, because experiments using deep sequencing technology vary a great deal among each other. This is why we have developed a flexible tool library called Pyicos, which aims to help biologists in their research when performing their analysis on mapped reads.

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© 2012 Springer-Verlag Berlin Heidelberg

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González-Vallinas, J., Althammer, S., Eyras, E. (2012). Pyicos: A Flexible Tool Library for Analyzing Protein-Nucleotide Interactions with Mapped Reads from Deep Sequencing. In: Freitas, A.T., Navarro, A. (eds) Bioinformatics for Personalized Medicine. JBI 2010. Lecture Notes in Computer Science(), vol 6620. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-642-28062-7_9

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  • DOI: https://doi.org/10.1007/978-3-642-28062-7_9

  • Publisher Name: Springer, Berlin, Heidelberg

  • Print ISBN: 978-3-642-28061-0

  • Online ISBN: 978-3-642-28062-7

  • eBook Packages: Computer ScienceComputer Science (R0)

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