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Part of the book series: Current Topics in Microbiology and Immunology ((CT MICROBIOLOGY,volume 369))

Abstract

The origin of hepatitis C virus (HCV) can be conceptualised at several levels. Firstly, origins might refer to its dramatic spread throughout the Western world and developing countries throughout the twentieth century. As a blood-borne virus, this epidemic was fuelled by new parenteral transmission routes associated with medical treatments, immunisation, blood transfusion and more recently injecting drug use. At another level, however, origins might refer to the immediate sources of HCV associated with its pandemic spread, now identified as areas in Central and West sub-Saharan Africa and South and South East Asia where genetically diverse variants of HCV appear to have circulated for hundreds of years. Going back a final step to the actual source of HCV infection in these endemic areas, non-human primates have been long suspected as harbouring viruses related to HCV with potential cross-species transmission of variants corresponding to the 7 main genotypes into humans. Although there is tempting analogy between this and the clearly zoonotic origin of HIV-1 from chimpanzees in Central Africa, no published evidence to date has been obtained for infection of HCV-like viruses in either apes or Old World monkey species. Indeed, a radical re-think of both the host range and host-specificity of hepaciviruses is now required following the very recent findings of a non-primate hepacivirus (NPHV) in horses and potentially in dogs. Further research on a much wider range of mammals is needed to better understand the true genetic diversity of HCV-like viruses and their host ranges in the search for the ultimate origin of HCV in humans.

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References

  • Adams NJ, Prescott LE, Jarvis LM et al (1998) Detection of a novel flavivirus related to hepatitis G virus/GB virus C in chimpanzees. J Gen Virol 79:1871–1877

    CAS  PubMed  Google Scholar 

  • Alter HJ, Holland PV, Morrow AG, Purcell RH, Feinstone SM, Moritsugu Y (1975) Clinical and serological analysis of transfusion-associated hepatitis. Lancet ii:838–841

    Google Scholar 

  • Birkenmeyer LG, Desai SM, Muerhoff AS et al (1998) Isolation of a GB virus-related genome from a chimpanzee. J Med Virol 56:44–51

    CAS  PubMed  Google Scholar 

  • Bukh J (1995) Genetic heterogeneity of hepatitis C virus: quasispecies and genotypes. Semin Liver Dis 15:41–63

    CAS  PubMed  Google Scholar 

  • Bukh J, Purcell RH, Miller RH (1993) At least 12 genotypes of hepatitis C virus predicted by sequence analysis of the putative E1 gene of isolates collected worldwide. Proc Natl Acad Sci USA 90:8234–8238

    CAS  PubMed  Google Scholar 

  • Burbelo PD, Dubovi EJ, Simmonds P et al (2012) Serology-enabled discovery of genetically diverse hepaciviruses in a new host. J Virol 86:6171–6178

    CAS  PubMed  PubMed Central  Google Scholar 

  • Candotti D, Temple J, Sarkodie F, Allain JP (2003) Frequent recovery and broad genotype 2 diversity characterize hepatitis C virus infection in Ghana, West Africa. J Virol 77:7914–7923

    CAS  PubMed  PubMed Central  Google Scholar 

  • Choo QL, Kuo G, Weiner AJ, Overby LR, Bradley DW, Houghton M (1989) Isolation of a cDNA derived from a blood-borne non-A, non-B hepatitis genome. Sci 244:359–362

    Google Scholar 

  • Cochrane A, Searle B, Hardie A et al (2002) A genetic analysis of hepatitis C virus transmission between injection drug users. J Infect Dis 186:1212–1221

    CAS  PubMed  Google Scholar 

  • de Bruijne J, Schinkel J, Prins M et al (2009) Emergence of hepatitis C virus genotype 4: phylogenetic analysis reveals three distinct epidemiological profiles. J Clin Microbiol 47:3832–3838

    PubMed  PubMed Central  Google Scholar 

  • Drucker E, Alcabes PG, Marx PA (2001) The injection century: massive unsterile injections and the emergence of human pathogens. Lancet 358:1989–1992

    CAS  PubMed  Google Scholar 

  • Epstein JH, Quan PL, Briese T et al (2010) Identification of GBV-D, a novel GB-like flavivirus from old world frugivorous bats (Pteropus giganteus) in Bangladesh. PLoS Pathog 6:e1000972

    PubMed  PubMed Central  Google Scholar 

  • Feinstone SM, Kapikian AZ, Purcell RH (1975) Transfusion-associated hepatitis not due to viral hepatitis A or B. N Engl J Med 292:767–770

    CAS  PubMed  Google Scholar 

  • Foy E, Li K, Sumpter R Jr et al (2005) Control of antiviral defenses through hepatitis C virus disruption of retinoic acid-inducible gene-I signaling. Proc Natl Acad Sci U S A 102:2986–2991

    CAS  PubMed  PubMed Central  Google Scholar 

  • Fretz C, Jeannel D, Stuyver L et al (1995) HCV infection in a rural population of the Central African Republic (CAR): evidence for three additional subtypes of genotype 4. J Med Virol 47:435–437

    CAS  PubMed  Google Scholar 

  • Gao F, Bailes E, Robertson DL et al (1999) Origins of HIV-1 in the chimpanzee Pan troglodytes troglodytes. Nature 397:436–441

    CAS  PubMed  Google Scholar 

  • Hoofnagle JH (2002) Course and outcome of hepatitis C. Hepatology 36:S21–S29

    PubMed  Google Scholar 

  • Jeannel D, Fretz C, Traore Y et al (1998) Evidence for high genetic diversity and long-term endemicity of hepatitis C virus genotypes 1 and 2 in West Africa. J Med Virol 55:92–97

    CAS  PubMed  Google Scholar 

  • Jopling CL, Yi M, Lancaster AM, Lemon SM, Sarnow P (2005) Modulation of hepatitis C virus RNA abundance by a liver-specific MicroRNA. Science 309:1577–1581

    CAS  PubMed  Google Scholar 

  • Kapoor A, Simmonds P, Gerold G et al (2011) Characterization of a canine homolog of hepatitis C virus. Proc Natl Acad Sci U S A 108:11608–11613

    CAS  PubMed  PubMed Central  Google Scholar 

  • Li C, Lu L, Wu X et al (2009) Complete genomic sequences for hepatitis C virus subtypes 4b, 4c, 4d, 4g, 4k, 4l, 4m, 4n, 4o, 4p, 4q, 4r and 4t. J Gen Virol 90:1820–1826

    CAS  PubMed  PubMed Central  Google Scholar 

  • Li C, Cao H, Lu L, Murphy D (2012) Full-length sequences of 11 hepatitis C virus genotype 2 isolates representing five subtypes and six unclassified lineages with unique geographical distributions and genetic variation patterns. J Gen Virol 93:1173–1184

    CAS  PubMed  PubMed Central  Google Scholar 

  • Lu L, Murphy D, Li C et al (2008) Complete genomes of three subtype 6t isolates and analysis of many novel hepatitis C virus variants within genotype 6. J Gen Virol 89:444–452

    CAS  PubMed  Google Scholar 

  • Lyons S, Kapoor A, Sharp CP et al (2012) Prevalence and clinical and virological features of infection with non-primate hepaciviruses in domestic horses. Emerg Inf Dis 18:1976–1982

    Google Scholar 

  • Magiorkinis G, Magiorkinis E, Paraskevis D et al (2009) The global spread of hepatitis C virus 1a and 1b: a phylodynamic and phylogeographic analysis. PLoS Med 6:e1000198

    PubMed  PubMed Central  Google Scholar 

  • Makuwa M, Souquiere S, Telfer P et al (2003) Occurrence of hepatitis viruses in wild-born non-human primates: a 3 year (1998–2001) epidemiological survey in Gabon. J Med Primatol 32:307–314

    CAS  PubMed  Google Scholar 

  • Makuwa M, Souquiere S, Telfer P et al (2006) Hepatitis viruses in non-human primates. J Med Primatol 35:384–387

    CAS  PubMed  Google Scholar 

  • Markov PV, Pepin J, Frost E, Deslandes S, Labbe AC, Pybus OG (2009) Phylogeography and molecular epidemiology of hepatitis C virus genotype 2 in Africa. J Gen Virol 90:2086–2096

    CAS  PubMed  Google Scholar 

  • Martial J, Morice Y, Abel S et al (2004) Hepatitis C virus (HCV) genotypes in the Caribbean island of Martinique: evidence for a large radiation of HCV-2 and for a recent introduction from Europe of HCV-4. J Clin Microbiol 42:784–791

    PubMed  PubMed Central  Google Scholar 

  • Mellor J, Holmes EC, Jarvis LM, Yap PL, Simmonds P, International HCV (1995) Investigation of the pattern of hepatitis C virus sequence diversity in different geographical regions: implications for virus classification. J Gen Virol 76:2493–2507

    CAS  PubMed  Google Scholar 

  • Menendez C, Sancheztapias JM, Alonso PL et al (1999) Molecular evidence of mother-to-infant transmission of hepatitis G virus among women without known risk factors for parenteral infections. J Clin Microbiol 37:2333–2336

    CAS  PubMed  PubMed Central  Google Scholar 

  • Mizokami M, Tanaka Y, Miyakawa Y (2006) Spread times of hepatitis C virus estimated by the molecular clock differ among Japan, the United States and Egypt in reflection of their distinct socioeconomic backgrounds. Intervirology 49:28–36

    PubMed  Google Scholar 

  • Muerhoff AS, Leary TP, Simons JN et al (1995) Genomic organization of GB viruses A and B: two new members of the flaviviridae associated with GB agent hepatitis. J Virol 69:5621–5630

    CAS  PubMed  PubMed Central  Google Scholar 

  • Nakano T, Lu L, Liu P, Pybus OG (2004) Viral gene sequences reveal the variable history of hepatitis C virus infection among countries. J Infect Dis 190:1098–1108

    CAS  PubMed  Google Scholar 

  • Ndjomou J, Pybus OG, Matz B (2003) Phylogenetic analysis of hepatitis C virus isolates indicates a unique pattern of endemic infection in Cameroon. J Gen Virol 84:2333–2341

    CAS  PubMed  Google Scholar 

  • Nelson PK, Mathers BM, Cowie B et al (2011) Global epidemiology of hepatitis B and hepatitis C in people who inject drugs: results of systematic reviews. Lancet 378:571–583

    PubMed  PubMed Central  Google Scholar 

  • Nicot F, Legrand-Abravanel F, Sandres-Saune K et al (2005) Heterogeneity of hepatitis C virus genotype 4 strains circulating in south-western France. J Gen Virol 86:107–114

    CAS  PubMed  Google Scholar 

  • Parera M, Martrus G, Franco S, Clotet B, Martinez MA (2012) Canine hepacivirus NS3 serine protease can cleave the human adaptor proteins MAVS and TRIF. PLoS ONE 7:e42481

    CAS  PubMed  PubMed Central  Google Scholar 

  • Pawlotsky JM (2003) The nature of interferon-alpha resistance in hepatitis C virus infection. Curr Opin Infect Dis 16:587–592

    CAS  PubMed  Google Scholar 

  • Pepin J, Labbe AC (2012) Noble goals, unforeseen consequences: control of tropical diseases in colonial Central Africa and the iatrogenic transmission of blood-borne viruses. Trop Med Int Health 16:744–753

    Google Scholar 

  • Pradat P, Trepo C (2000) HCV: epidemiology, modes of transmission and prevention of spread. Baillieres Best Pract Res Clin Gastroenterol 14:201–210

    CAS  PubMed  Google Scholar 

  • Prince AM, Brotman B, Grady GF et al (1974) Long incubation post-transfusion hepatitis without evidence of exposure to hepatitis B virus. Lancet ii:241–246

    Google Scholar 

  • Pybus OG, Charleston MA, Gupta S, Rambaut A, Holmes EC, Harvey PH (2001) The epidemic behavior of the hepatitis C virus. Science 292:2323–2325

    CAS  PubMed  Google Scholar 

  • Pybus OG, Drummond AJ, Nakano T, Robertson BH, Rambaut A (2003) The epidemiology and iatrogenic transmission of hepatitis C virus in Egypt: a bayesian coalescent approach. Mol Biol Evol 20:381–387

    CAS  PubMed  Google Scholar 

  • Pybus OG, Markov PV, Wu A, Tatem AJ (2007) Investigating the endemic transmission of the hepatitis C virus. Int J Parasitol 37:839–849

    CAS  PubMed  Google Scholar 

  • Pybus OG, Barnes E, Taggart R et al (2009) Genetic history of hepatitis C virus in East Asia. J Virol 83:1071–1082

    CAS  PubMed  Google Scholar 

  • Ruggieri A, Argentini C, Kouruma F et al (1996) Heterogeneity of hepatitis C virus genotype 2 variants in West Central Africa (Guinea Conakry). J Gen Virol 77:2073–2076

    CAS  PubMed  Google Scholar 

  • Seeff LB (2002) Natural history of chronic hepatitis C. Hepatology 36:S35–S46

    PubMed  Google Scholar 

  • Sharp PM, Simmonds P (2011) Evaluating the evidence for virus/host co-evolution. Curr Opin Virol 1:436–441

    PubMed  Google Scholar 

  • Shepard CW, Finelli L, Alter MJ (2005) Global epidemiology of hepatitis C virus infection. Lancet Infect Dis 5:558–567

    PubMed  Google Scholar 

  • Simmonds P, Holmes EC, Cha TA et al (1993) Classification of hepatitis C virus into six major genotypes and a series of subtypes by phylogenetic analysis of the NS-5 region. J Gen Virol 74:2391–2399

    CAS  PubMed  Google Scholar 

  • Simmonds P, Bukh J, Combet C et al (2005) Consensus proposals for a unified system of nomenclature of hepatitis C virus genotypes. Hepatology 42:962–973

    CAS  PubMed  Google Scholar 

  • Simmonds P, Becher P, Collett MS, Gould EA, Heinz FX, Meyers G, Monath T, Pletnev A, Rice CM, Stiasny K, Thiel HJ, Weiner A, Bukh J (2011) Flaviviridae. In: King AMQ, Adams MJ, Carstens EB, Lefkowitz EJ (eds) Virus taxonomy. Elsevier, Oxford, pp 1003–1020

    Google Scholar 

  • Simons JN, Pilot-Matias TJ, Leary TP et al (1995) Identification of two flavivirus-like genomes in the GB hepatitis agent. Proc Natl Acad Sci USA 92:3401–3405

    CAS  PubMed  Google Scholar 

  • Smith DB, Pathirana S, Davidson F et al (1997) The origin of hepatitis C virus genotypes. J Gen Virol 78:321–328

    CAS  PubMed  Google Scholar 

  • Stapleton JT, Foung S, Muerhoff AS, Bukh J, Simmonds P (2011) The GB viruses: a review and proposed classification of GBV-A, GBV-C (HGV), and GBV-D in genus pegivirus within the family Flaviviridae. J Gen Virol 92:233–246

    CAS  PubMed  PubMed Central  Google Scholar 

  • Stuyver L, Rossau R, Wyseur A et al (1993) Typing of hepatitis C virus isolates and characterization of new subtypes using a line probe assay. J Gen Virol 74:1093–1102

    CAS  PubMed  Google Scholar 

  • Sulbaran MZ, Di Lello FA, Sulbaran Y et al (2010) Genetic history of hepatitis C virus in Venezuela: high diversity and long time of evolution of HCV genotype 2. PLoS ONE 5:e14315

    CAS  PubMed  PubMed Central  Google Scholar 

  • Tamura K, Dudley J, Nei M, Kumar S (2007) MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol Biol Evol 24:1596–1599

    CAS  PubMed  Google Scholar 

  • Thomas DL (2000) Hepatitis C epidemiology. Curr Top Microbiol Immunol 242:25–41

    CAS  PubMed  Google Scholar 

  • Thomas F, Nicot F, Sandres-Saune K et al (2007) Genetic diversity of HCV genotype 2 strains in south western France. J Med Virol 79:26–34

    CAS  PubMed  Google Scholar 

  • Tokita H, Shrestha SM, Okamoto H et al (1994a) Hepatitis C virus variants from Nepal with novel genotypes and their classification into the third major group. J Gen Virol 75:931–936

    CAS  PubMed  Google Scholar 

  • Tokita H, Okamoto H, Tsuda F et al (1994b) Hepatitis C virus variants from Vietnam are classifiable into the seventh, eighth, and ninth major genetic groups. Proc Natl Acad Sci USA 91:11022–11026

    CAS  PubMed  Google Scholar 

  • Tokita H, Okamoto H, Luengrojanakul P et al (1995) Hepatitis C virus variants from Thailand classifiable into five novel genotypes in the sixth (6b), seventh (7c, 7d) and ninth (9b, 9c) major genetic groups. J Gen Virol 76:2329–2335

    CAS  PubMed  Google Scholar 

  • Utama A, Tania NP, Dhenni R et al (2010) Genotype diversity of hepatitis C virus (HCV) in HCV-associated liver disease patients in Indonesia. Liver Int 30:1152–1160

    CAS  PubMed  Google Scholar 

  • Wansbrough-Jones MH, Frimpong E, Cant B, Harris K, Evans MRW, Teo CG (1998) Prevalence and genotype of hepatitis C virus infection in pregnant women and blood donors in Ghana. Trans R Soc Trop Med Hyg 92:496–499

    CAS  PubMed  Google Scholar 

  • Wasley A, Alter MJ (2000) Epidemiology of hepatitis C: geographic differences and temporal trends. Semin Liver Dis 20:1–16

    CAS  PubMed  Google Scholar 

  • Xu LZ, Larzul D, Delaporte E, Brechot C, Kremsdorf D (1994) Hepatitis C virus genotype 4 is highly prevalent in central Africa (Gabon). J Gen Virol 75:2393–2398

    CAS  PubMed  Google Scholar 

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Simmonds, P. (2013). The Origin of Hepatitis C Virus. In: Bartenschlager, R. (eds) Hepatitis C Virus: From Molecular Virology to Antiviral Therapy. Current Topics in Microbiology and Immunology, vol 369. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-642-27340-7_1

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