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Part of the book series: Soil Biology ((SOILBIOL,volume 11))

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References

  • Almeida Engler de J, Montagu Van M, Engler G (1994) Hybridization in situ of whole-mount messenger RNA in plants. Plant Mol Biol Rep 12:321–331

    Google Scholar 

  • Arabidopsis Genome Initiative (2000) Analysis of the genome sequence of the flowering plant Arabidopsis thaliana. Nature 408:796–815

    Article  Google Scholar 

  • Bertucci F, Beranrd K, Loriod B, Chang YC, Granjeaud S, Birnbaum D, Ntuyen C, Peck K, Jordan B (1999) Sensitivity issues in DNA array-based expression measurements and performance of nylon microarrays for small samples. Hum Mol Genet 8:1715–1722

    Article  PubMed  CAS  Google Scholar 

  • Butler D, Pockley P (2000) Monsanto makes rice genome public. Nature 404:534

    Article  PubMed  CAS  Google Scholar 

  • Chelly J, Kahn A (1994) RT-PCR and mRNA quantitation. In: Mullis DB, Ferre F, Gibbs RA (eds) The polymerase chain reaction. Birkhauser, Boston, pp 97–109

    Google Scholar 

  • Childs GV (1999) In situ hybridization with non-radioactive probes. In: Methods in molecular biology. Humana, Totowa, pp 131–141

    Google Scholar 

  • Chuaqui RF, Bonner RF, Best CJ, Gillespie JW, Flaig MJ, Hewitt SM, Phillips JL, Krizman DB, Tangrea MA, Ahram M, Linehan WM, Knezevic V, Emmert-Buck MR (2002) Post-analysis follow-up and validation of microarray experiments. Nat Genet 32:509–514

    Article  PubMed  CAS  Google Scholar 

  • Davenport RJ (2001) Rice genome. Syngenta finishes, consortium goes on. Science 291:807

    Article  PubMed  CAS  Google Scholar 

  • Eisen MB, Brown PO (1999) DNA arrays for analysis of gene expression. Methods Enzymol 303:179–205

    Article  PubMed  CAS  Google Scholar 

  • Eisen MB, Spellman PT, Brown PO, Botstein D (1998) Cluster analysis and display of genome-wide expression patterns. Proc Natl Acad Sci USA 95:14863–14868

    Article  PubMed  CAS  Google Scholar 

  • Fodor S (1997) Massively parallel genomics. Science 277:393

    Article  CAS  Google Scholar 

  • Jason W, O’Neill J W, Bier E (1994) Double-label in situ hybridization using biotin and digoxigenin-tagged RNA probes. BioTechniques 17:870–875

    Google Scholar 

  • Lockhart DJ, Winzeler EA (2000) Genomics, gene expression and DNA arrays. Nature 405:827–836

    Article  PubMed  CAS  Google Scholar 

  • Sambrook J, Fritsch EF, Maniatis T (1989) Molecular cloning: a laboratory manual. Cold Spring Harbor Laboratory, Plainview

    Google Scholar 

  • Schneeberger C, Speiser P, Kury F, Zeillinger R (1995) Quantitative detection of reverse transcriptase-PCR products by means of a novel and sensitive DNA stain. PCR Methods Appl 4:234–238

    PubMed  CAS  Google Scholar 

  • Sperisen P, Wang SM, Reichenbach, P, Nabholz M (1992) A PCR-based assay for reporter gene expression. PCR Methods Appl 1:164–170

    PubMed  CAS  Google Scholar 

  • Taniguchi M, Miura K, Iwao H, Yamanaka S (2001) Quantitative assessment of DNA microarrays — comparison with Northern blot analyses. Genomics 71:34–39

    Article  PubMed  CAS  Google Scholar 

  • Tautz D, Pfeifle C (1989) A nonradioactive in situ hybridization method for the localization of specific RNAs in Drosophila embryos reveals translational control of the segmentation gene hunchback. Chromosoma 98:81–85

    Article  PubMed  CAS  Google Scholar 

  • Trayhurn P, Duncan JS, Nestor A, Thomas MEA, Rayner DV (1994) Chemiluminescent detection of mRNAs on Northern blots with digoxigenin end-labeled oligonucleoides. Anal Biochem 222:224–230

    Article  PubMed  CAS  Google Scholar 

  • Wilkinson DG (1994) In situ hybridization. A practical approach. IRL Press, Oxford

    Google Scholar 

  • Yadetie F, Sandvik AK, Bergum H, Norsett K, Laegreid A (2004) Miniaturized fluorescent RNA dot blot method for rapid quantitation of gene expression. BMC Biotechnol 4:12

    Article  PubMed  Google Scholar 

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Yadav, S.K., Singla-Pareek, S.L., Pareek, A. (2007). Transcriptome Analysis. In: Varma, A., Oelmüller, R. (eds) Advanced Techniques in Soil Microbiology. Soil Biology, vol 11. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-540-70865-0_7

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