Skip to main content

MicroRNA Molecules, Master Regulators, Biomarkers, and Potential Therapies

  • Chapter
  • First Online:
Book cover Studies on Arthritis and Joint Disorders

Abstract

A group of small noncoding RNAs-known as microRNAs-are master posttranscriptional regulators of cellular processes during specification and also preserve tissue homeostasis in adults. Most of the microRNA molecules (miRNAs) are tissue and stage specific, so that patterns of miRNA expression can be useful biomarkers in neoplastic, degenerative, and inflammatory diseases. Environmental factors have a great impact on the pathogenesis of rheumatic diseases, due to their ability to induce epigenetic modifications in gene expression patterns. A common vehicle of exogenously induced epigenetic modifications is oxidative stress. A number of miRNA are induced by redox-sensitive transcription factors and/or by epigenetic modifications. These miRNAs participate in the cellular response to oxidative stress either by protecting cells or promoting damage. In this sense, high-throughput miRNA expression studies can identify miRNA signatures that will help assess the risk of oxidative stress-dependent damage in defined cell populations. Importantly, a single miRNA can regulate an entire molecular pathway through the binding and translational inhibition of several end products. Furthermore, some miRNAs control the activity of transcriptional regulators. This ability makes miRNA attractive as therapeutic agents, an emerging field that is starting to be explored.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Chapter
USD 29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 139.00
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 179.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book
USD 219.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

Abbreviations

Ago:

Argonaute

DGCR:

DiGeorge critical region

DNMT:

DNA methyltransferase

DUSP:

Domain in ubiquitin-specific proteases

ERK:

Extracellular signal-regulated kinase

FGF:

Fibroblastic growth factor(s)

Fox:

Forkhead box transcription factor

GSH:

Reduced glutathione

GW:

Glycin-tryptophan dipeptide-rich protein

HDAC:

Histone deacetylase(s)

HIF:

Hypoxia-inducible factor

HO:

Heme oxygenase

ICOS:

Inducible T cell costimulator

IFN:

Interferon

IL:

Interleukin

IRAK:

Interleukin-1 receptor-associated kinase

IRF:

Interferon regulatory factor

LDL:

Low-density lipoproteins

MMP:

Metalloproteinase

miRNA:

MicroRNA molecule(s)

NF:

Nuclear factor

NO:

Nitric oxide

NOS:

Nitric oxide synthase

Nrf2:

Erythroid 2-related factor

P bodies:

Processing bodies

PBMC:

Peripheral blood mononuclear cells

PDCD:

Programmed cell death

PDGF:

Platelet-derived growth factor

PDGFR:

Platelet-derived growth factor receptor

PTPN:

Protein tyrosine phosphatase nonreceptor type

RISC:

RNA-induced silencing complex

ROS:

Reactive oxygen species

RUNX:

Runt-related transcription factor

SOD:

Superoxide dismutase

SPARC:

Secreted protein acidic and rich in cysteine

SP:

Specificity protein

TCR:

T cell receptor

TLR:

Toll-like receptor(s)

TNF:

Tumor necrosis factor

TRAF:

Tumor necrosis factor receptor-associated factor

TRBP:

TAR RNA-binding protein

Txnrd:

Thioredoxin reductase

UTR:

Untranslated region

VCAM:

Vascular cell adhesion molecule

VEGF:

Vascular endothelial growth factor

References

  1. van der Krol AR, Mur LA, Beld M, Mol JN, Stuitje AR (1990) Flavonoid genes in petunia: addition of a limited number of gene copies may lead to a suppression of gene expression. Plant Cell 2:291–299

    PubMed  Google Scholar 

  2. Elbashir SM, Harborth J, Lendeckel W, Yalcin A, Weber K, Tuschl T (2001) Duplexes of 21-nucleotide RNAs mediate RNA interference in cultured mammalian cells. Nature 411: 494–498

    Article  PubMed  CAS  Google Scholar 

  3. Fire A, Xu S, Montgomery MK, Kostas SA, Driver SE, Mello CC (1998) Potent and specific genetic interference by double-stranded RNA in Caenorhabditis elegans. Nature 391: 806–811

    Article  PubMed  CAS  Google Scholar 

  4. Kim DH, Behlke MA, Rose SD, Chang MS, Choi S, Rossi JJ (2005) Synthetic dsRNA Dicer substrates enhance RNAi potency and efficacy. Nat Biotechnol 23:222–226

    Article  PubMed  CAS  Google Scholar 

  5. Jakymiw A, Pauley KM, Li S et al (2007) The role of GW/P-bodies in RNA processing and silencing. J Cell Sci 120:1317–1323

    Article  PubMed  CAS  Google Scholar 

  6. Ambros V (2004) The functions of animal microRNAs. Nature 431:350–355

    Article  PubMed  CAS  Google Scholar 

  7. Pillai RS, Bhattacharyya SN, Filipowicz W (2007) Repression of protein synthesis by miRNAs: how many mechanisms? Trends Cell Biol 17:118–126

    Article  PubMed  CAS  Google Scholar 

  8. Bhattacharyya SN, Filipowicz W (2007) Argonautes and company: sailing against the wind. Cell 128:1027–1028

    Article  PubMed  CAS  Google Scholar 

  9. Baek D, Villen J, Shin C, Camargo FD, Gygi SP, Bartel DP (2008) The impact of microRNAs on protein output. Nature 455:64–71

    Article  PubMed  CAS  Google Scholar 

  10. Berezikov E, Chung WJ, Willis J, Cuppen E, Lai EC (2007) Mammalian mirtron genes. Mol Cell 28:328–336

    Article  PubMed  CAS  Google Scholar 

  11. Stram Y, Kuzntzova L (2006) Inhibition of viruses by RNA interference. Virus Genes 32: 299–306

    Article  PubMed  CAS  Google Scholar 

  12. Vagin VV, Sigova A, Li C, Seitz H, Gvozdev V, Zamore PD (2006) A distinct small RNA pathway silences selfish genetic elements in the germline. Science 313:320–324

    Article  PubMed  CAS  Google Scholar 

  13. Jovanovic M, Hengartner MO (2006) miRNAs and apoptosis: RNAs to die for. Oncogene 25:6176–6187

    Article  PubMed  CAS  Google Scholar 

  14. Tang X, Tang G, Ozcan S (2008) Role of microRNAs in diabetes. Biochim Biophys Acta 1779:697–701

    Article  PubMed  CAS  Google Scholar 

  15. Kalis M, Bolmeson C, Esguerra JL et al (2011) Beta-cell specific deletion of Dicer1 leads to defective insulin secretion and diabetes mellitus. PLoS One 6:e29166

    Article  PubMed  CAS  Google Scholar 

  16. Tsai LM, Yu D (2010) MicroRNAs in common diseases and potential therapeutic applications. Clin Exp Pharmacol Physiol 37:102–107

    Article  PubMed  CAS  Google Scholar 

  17. Schonthaler HB, Guinea-Viniegra J, Wagner EF (2011) Targeting inflammation by modulating the Jun/AP-1 pathway. Ann Rheum Dis 70(Suppl 1):i109–i112

    Article  PubMed  CAS  Google Scholar 

  18. Cobb BS, Hertweck A, Smith J et al (2006) A role for Dicer in immune regulation. J Exp Med 203:2519–2527

    Article  PubMed  CAS  Google Scholar 

  19. Muljo SA, Ansel KM, Kanellopoulou C, Livingston DM, Rao A, Rajewsky K (2005) Aberrant T cell differentiation in the absence of Dicer. J Exp Med 202:261–269

    Article  PubMed  CAS  Google Scholar 

  20. Chong MM, Rasmussen JP, Rudensky AY, Littman DR (2008) The RNAseIII enzyme Drosha is critical in T cells for preventing lethal inflammatory disease. J Exp Med 205:2005–2017

    Article  PubMed  CAS  Google Scholar 

  21. O’Carroll D, Mecklenbrauker I, Das PP et al (2007) A Slicer-independent role for Argonaute 2 in hematopoiesis and the microRNA pathway. Genes Dev 21:1999–2004

    Article  PubMed  Google Scholar 

  22. McKenna SA, Kim I, Liu CW, Puglisi JD (2006) Uncoupling of RNA binding and PKR kinase activation by viral inhibitor RNAs. J Mol Biol 358:1270–1285

    Article  PubMed  CAS  Google Scholar 

  23. Mavrakis KJ, Leslie CS, Wendel HG (2011) Cooperative control of tumor suppressor genes by a network of oncogenic microRNAs. Cell Cycle 10:2845–2849

    Article  PubMed  CAS  Google Scholar 

  24. Hunter MP, Ismail N, Zhang X et al (2008) Detection of microRNA expression in human peripheral blood microvesicles. PLoS One 3:e3694

    Article  PubMed  Google Scholar 

  25. Bloomston M, Frankel WL, Petrocca F et al (2007) MicroRNA expression patterns to differentiate pancreatic adenocarcinoma from normal pancreas and chronic pancreatitis. JAMA 297: 1901–1908

    Article  PubMed  CAS  Google Scholar 

  26. Deapen D, Escalante A, Weinrib L et al (1992) A revised estimate of twin concordance in systemic lupus erythematosus. Arthritis Rheum 35:311–318

    Article  PubMed  CAS  Google Scholar 

  27. Sanchez-Pernaute O, Ospelt C, Neidhart M, Gay S (2008) Epigenetic clues to rheumatoid arthritis. J Autoimmun 30:12–20

    Article  PubMed  CAS  Google Scholar 

  28. Jiang T, Zhou X, Taghizadeh K, Dong M, Dedon PC (2007) N-formylation of lysine in histone proteins as a secondary modification arising from oxidative DNA damage. Proc Natl Acad Sci USA 104:60–65

    Article  PubMed  CAS  Google Scholar 

  29. Druz A, Betenbaugh M, Shiloach J (2012) Glucose depletion activates mmu-miR-466h-5p expression through oxidative stress and inhibition of histone deacetylation. Nucleic Acids Res 40(15):7291–7302

    Article  PubMed  CAS  Google Scholar 

  30. Liu C, Zhou C, Gao F et al (2011) MiR-34a in age and tissue related radio-sensitivity and serum miR-34a as a novel indicator of radiation injury. Int J Biol Sci 7:221–233

    Article  PubMed  CAS  Google Scholar 

  31. Krek A, Grun D, Poy MN et al (2005) Combinatorial microRNA target predictions. Nat Genet 37:495–500

    Article  PubMed  CAS  Google Scholar 

  32. Naugler WE, Karin M (2008) The wolf in sheep’s clothing: the role of interleukin-6 in immunity, inflammation and cancer. Trends Mol Med 14:109–119

    Article  PubMed  CAS  Google Scholar 

  33. Sidiropoulos PI, Goulielmos G, Voloudakis GK, Petraki E, Boumpas DT (2008) Inflammasomes and rheumatic diseases: evolving concepts. Ann Rheum Dis 67:1382–1389

    Article  PubMed  CAS  Google Scholar 

  34. Clark A (2000) Post-transcriptional regulation of pro-inflammatory gene expression. Arthritis Res 2:172–174

    Article  PubMed  CAS  Google Scholar 

  35. Feldmann M, Brennan FM, Williams RO, Elliott MJ, Maini RN (1995) Cytokine expression and networks in rheumatoid arthritis: rationale for anti-TNF alpha antibody therapy and its mechanism of action. J Inflamm 47:90–96

    PubMed  CAS  Google Scholar 

  36. Firestein GS (2003) Evolving concepts of rheumatoid arthritis. Nature 423:356–361

    Article  PubMed  CAS  Google Scholar 

  37. Ishikawa S, Mima T, Aoki C et al (2009) Abnormal expression of the genes involved in cytokine networks and mitochondrial function in systemic juvenile idiopathic arthritis identified by DNA microarray analysis. Ann Rheum Dis 68:264–272

    Article  PubMed  CAS  Google Scholar 

  38. Nakasa T, Miyaki S, Okubo A et al (2008) Expression of microRNA-146 in rheumatoid arthritis synovial tissue. Arthritis Rheum 58:1284–1292

    Article  PubMed  CAS  Google Scholar 

  39. Pauley KM, Satoh M, Chan AL, Bubb MR, Reeves WH, Chan EK (2008) Upregulated miR-146a expression in peripheral blood mononuclear cells from rheumatoid arthritis patients. Arthritis Res Ther 10:R101

    Article  PubMed  Google Scholar 

  40. Stanczyk J, Pedrioli DM, Brentano F et al (2008) Altered expression of MicroRNA in synovial fibroblasts and synovial tissue in rheumatoid arthritis. Arthritis Rheum 58:1001–1009

    Article  PubMed  Google Scholar 

  41. Taganov KD, Boldin MP, Chang KJ, Baltimore D (2006) NF-kappaB-dependent induction of microRNA miR-146, an inhibitor targeted to signaling proteins of innate immune responses. Proc Natl Acad Sci USA 103:12481–12486

    Article  PubMed  CAS  Google Scholar 

  42. Tili E, Michaille JJ, Cimino A et al (2007) Modulation of miR-155 and miR-125b levels following lipopolysaccharide/TNF-alpha stimulation and their possible roles in regulating the response to endotoxin shock. J Immunol 179:5082–5089

    PubMed  CAS  Google Scholar 

  43. O’Connell RM, Kahn D, Gibson WS et al (2010) MicroRNA-155 promotes autoimmune inflammation by enhancing inflammatory T cell development. Immunity 33:607–619

    Article  PubMed  Google Scholar 

  44. Stanczyk J, Ospelt C, Karouzakis E et al (2011) Altered expression of microRNA-203 in rheumatoid arthritis synovial fibroblasts and its role in fibroblast activation. Arthritis Rheum 63: 373–381

    Article  PubMed  Google Scholar 

  45. Bueno MJ, Perez de Castro I, Gomez de Cedron M et al (2008) Genetic and epigenetic silencing of microRNA-203 enhances ABL1 and BCR-ABL1 oncogene expression. Cancer Cell 13: 496–506

    Article  PubMed  CAS  Google Scholar 

  46. Bernatsky S, Boivin JF, Joseph L et al (2006) Mortality in systemic lupus erythematosus. Arthritis Rheum 54:2550–2557

    Article  PubMed  CAS  Google Scholar 

  47. Boers M, Nurmohamed MT, Doelman CJ et al (2003) Influence of glucocorticoids and disease activity on total and high density lipoprotein cholesterol in patients with rheumatoid arthritis. Ann Rheum Dis 62:842–845

    Article  PubMed  CAS  Google Scholar 

  48. Booth AD, Jayne DR, Kharbanda RK et al (2004) Infliximab improves endothelial dysfunction in systemic vasculitis: a model of vascular inflammation. Circulation 109:1718–1723

    Article  PubMed  CAS  Google Scholar 

  49. Ceribelli A, Yao B, Dominguez-Gutierrez PR, Nahid MA, Satoh M, Chan EK (2011) MicroRNAs in systemic rheumatic diseases. Arthritis Res Ther 13:229

    Article  PubMed  CAS  Google Scholar 

  50. Sen CK, Gordillo GM, Khanna S, Roy S (2009) Micromanaging vascular biology: tiny microRNAs play big band. J Vasc Res 46:527–540

    Article  PubMed  CAS  Google Scholar 

  51. Ivan M, Harris AL, Martelli F, Kulshreshtha R (2008) Hypoxia response and microRNAs: no longer two separate worlds. J Cell Mol Med 12:1426–1431

    Article  PubMed  CAS  Google Scholar 

  52. Xie H, Lim B, Lodish HF (2009) MicroRNAs induced during adipogenesis that accelerate fat cell development are downregulated in obesity. Diabetes 58:1050–1057

    Article  PubMed  CAS  Google Scholar 

  53. Hulsmans M, De Keyzer D, Holvoet P (2011) MicroRNAs regulating oxidative stress and inflammation in relation to obesity and atherosclerosis. FASEB J 25:2515–2527

    Article  PubMed  CAS  Google Scholar 

  54. Harris TA, Yamakuchi M, Ferlito M, Mendell JT, Lowenstein CJ (2008) MicroRNA-126 regulates endothelial expression of vascular cell adhesion molecule 1. Proc Natl Acad Sci USA 105:1516–1521

    Article  PubMed  CAS  Google Scholar 

  55. Fang Y, Shi C, Manduchi E, Civelek M, Davies PF (2010) MicroRNA-10a regulation of proinflammatory phenotype in athero-susceptible endothelium in vivo and in vitro. Proc Natl Acad Sci USA 107:13450–13455

    Article  PubMed  CAS  Google Scholar 

  56. McGregor RA, Choi MS (2011) microRNAs in the regulation of adipogenesis and obesity. Curr Mol Med 11:304–316

    Article  PubMed  CAS  Google Scholar 

  57. Chen T, Huang Z, Wang L et al (2009) MicroRNA-125a-5p partly regulates the inflammatory response, lipid uptake, and ORP9 expression in oxLDL-stimulated monocyte/macrophages. Cardiovasc Res 83:131–139

    Article  PubMed  CAS  Google Scholar 

  58. Xiao C, Srinivasan L, Calado DP et al (2008) Lymphoproliferative disease and autoimmunity in mice with increased miR-17-92 expression in lymphocytes. Nat Immunol 9:405–414

    Article  PubMed  CAS  Google Scholar 

  59. Chen CZ, Li L, Lodish HF, Bartel DP (2004) MicroRNAs modulate hematopoietic lineage differentiation. Science 303:83–86

    Article  PubMed  CAS  Google Scholar 

  60. Ceribelli A, Tincani A, Cavazzana I et al (2011) Anti-argonaute2 (Ago2/Su) and -Ro antibodies identified by immunoprecipitation in primary anti-phospholipid syndrome (PAPS). Autoimmunity 44:90–97

    Article  PubMed  CAS  Google Scholar 

  61. Tang Y, Luo X, Cui H et al (2009) MicroRNA-146A contributes to abnormal activation of the type I interferon pathway in human lupus by targeting the key signaling proteins. Arthritis Rheum 60:1065–1075

    Article  PubMed  CAS  Google Scholar 

  62. Wang H, Peng W, Ouyang X, Li W, Dai Y (2012) Circulating microRNAs as candidate biomarkers in patients with systemic lupus erythematosus. Transl Res 160(3):198–206

    Article  PubMed  CAS  Google Scholar 

  63. Zhao S, Wang Y, Liang Y et al (2011) MicroRNA-126 regulates DNA methylation in CD4+ T cells and contributes to systemic lupus erythematosus by targeting DNA methyltransferase 1. Arthritis Rheum 63:1376–1386

    Article  PubMed  CAS  Google Scholar 

  64. Alevizos I, Alexander S, Turner RJ, Illei GG (2011) MicroRNA expression profiles as biomarkers of minor salivary gland inflammation and dysfunction in Sjögren’s syndrome. Arthritis Rheum 63:535–544

    Article  PubMed  CAS  Google Scholar 

  65. Maurer B, Stanczyk J, Jungel A et al (2010) MicroRNA-29, a key regulator of collagen expression in systemic sclerosis. Arthritis Rheum 62:1733–1743

    Article  PubMed  CAS  Google Scholar 

  66. Kim KM, Park SJ, Jung SH et al (2012) miR-182 is a negative regulator of osteoblast proliferation, differentiation, and skeletogenesis through targeting FoxO1. J Bone Miner Res 27:1669–1679

    Article  PubMed  Google Scholar 

  67. Li J, Huang J, Dai L et al (2012) miR-146a, an IL-1beta responsive miRNA, induces vascular endothelial growth factor and chondrocyte apoptosis by targeting Smad4. Arthritis Res Ther 14:R75

    Article  PubMed  CAS  Google Scholar 

  68. Chan SY, Loscalzo J (2010) MicroRNA-210: a unique and pleiotropic hypoxamir. Cell Cycle 9:1072–1083

    Article  PubMed  CAS  Google Scholar 

  69. Bai XY, Ma Y, Ding R, Fu B, Shi S, Chen XM (2011) miR-335 and miR-34a Promote renal senescence by suppressing mitochondrial antioxidative enzymes. J Am Soc Nephrol 22: 1252–1261

    Article  PubMed  CAS  Google Scholar 

  70. Wahid F, Shehzad A, Khan T, Kim YY (2010) MicroRNAs: synthesis, mechanism, function, and recent clinical trials. Biochim Biophys Acta 1803:1231–1243

    Article  PubMed  CAS  Google Scholar 

  71. Nagata Y, Nakasa T, Mochizuki Y et al (2009) Induction of apoptosis in the synovium of mice with autoantibody-mediated arthritis by the intraarticular injection of double-stranded MicroRNA-15a. Arthritis Rheum 60:2677–2683

    Article  PubMed  CAS  Google Scholar 

  72. Yoshizaki K, Wakita H, Takeda K, Takahashi K (2008) Conditional expression of microRNA against E-selectin inhibits leukocyte-endothelial adhesive interaction under inflammatory condition. Biochem Biophys Res Commun 371:747–751

    Article  PubMed  CAS  Google Scholar 

  73. Hu J, Xu Y, Hao J, Wang S, Li C, Meng S (2012) MiR-122 in hepatic function and liver diseases. Protein Cell 3:364–371

    Article  PubMed  CAS  Google Scholar 

  74. Lu LF, Boldin MP, Chaudhry A et al (2010) Function of miR-146a in controlling Treg cell-mediated regulation of Th1 responses. Cell 142:914–929

    Article  PubMed  CAS  Google Scholar 

  75. Hennessy EJ, Parker AE, O’Neill LA (2010) Targeting Toll-like receptors: emerging therapeutics? Nat Rev Drug Discov 9:293–307

    Article  PubMed  CAS  Google Scholar 

  76. Curtale G, Citarella F, Carissimi C et al (2010) An emerging player in the adaptive immune response: microRNA-146a is a modulator of IL-2 expression and activation-induced cell death in T lymphocytes. Blood 115:265–273

    Article  PubMed  CAS  Google Scholar 

  77. Arola-Arnal A, Blade C (2011) Proanthocyanidins modulate microRNA expression in human HepG2 cells. PLoS One 6:e25982

    Article  PubMed  CAS  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Olga Sánchez-Pernaute M.D., Ph.D. .

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2013 Springer Science+Business Media, LLC

About this chapter

Cite this chapter

Sánchez-Pernaute, O., Pérez-Ferro, M. (2013). MicroRNA Molecules, Master Regulators, Biomarkers, and Potential Therapies. In: Alcaraz, M., Gualillo, O., Sánchez-Pernaute, O. (eds) Studies on Arthritis and Joint Disorders. Oxidative Stress in Applied Basic Research and Clinical Practice. Humana Press, New York, NY. https://doi.org/10.1007/978-1-4614-6166-1_19

Download citation

Publish with us

Policies and ethics