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The Global Challenge of Genomics Education: A Path to the Future

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Book cover Genomics Applications for the Developing World

Part of the book series: Advances in Microbial Ecology ((AMIE))

Abstract

Since the nine genes of a bacteriophage were first sequenced in 1977 (Sanger et al. 1977), genomics research has transformed the study of genetics and has stimulated the emergence of an ever-lengthening list of new research specializations, including computational genomics, bioinformatics, metagenomics, pharmacogenomics, structural genomics, and more. The much-heralded publication of the human genome in Nature (Feb. 15, 2001) and Science (Feb. 16, 2001) marked not only a major advancement of knowledge but also a fundamental change in how biological research is done (Butler 2001). It has been noted that “When historians look back at this turning of the millennium, they will note that the major scientific breakthrough of the era was the characterization in ultimate detail of the genetic instructions that make a human being” (Collins and Jegalian 1999).

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References

  • Ai YC, Jermiin L et al (2003) Teaching bioinformatics: a student-centred and problem based approach. CAL-laborate 10:25–30

    CAS  Google Scholar 

  • American Association for the Advancement of Science (2003) Benchmarks for science literacy. New York: Oxford University Press

    Article  Google Scholar 

  • American Educational Research Association. American Psychological Association, & National Council on Measurement in Education (1999) Standards for educational and psychological testing. American Educational Research Association, Washington, DC

    Google Scholar 

  • Andersson S, Brodin E et al. (2001) Theory-anchored evaluation applied to a CSCL intense course in Bioinformatics. Accessed on 26 Apr 2012 at www.eculturenet.org/mmi/euro-cscl/Papers/94.doc

  • Bartlett JC (2005) Bioinformatics education in an MLIS program: the McGill experience. J Can Health Libr Assoc 26:79–81

    Article  Google Scholar 

  • Brass A (2000) Bioinformatics education—a UK perspective. Bioinformatics 16(2):77

    Article  PubMed  CAS  Google Scholar 

  • Brewer CA, Smith D (2011) Vision and change in undergraduate biology education: a call to action. American Association for the Advancement of Science, Washington, DC

    Google Scholar 

  • BSCS (2003) Bioinformatics and the human genome project. Accessed on 26 Apr 2012. Available at: http://www.bscs.org/curriculumdevelopment/highschool/humangenome/bioinformatics/

  • Butler D (2001) Postgenomics: data, data, everywhere…. Nature 414:840–841

    Article  PubMed  CAS  Google Scholar 

  • Calva E, Cardoso MJ, Gavilondo JV (2002) Avoiding the genomics divide. Trends Biotechnol 20:368–370

    Article  PubMed  Google Scholar 

  • Cattley S, Arthur JW (2007) BioManager: the use of a bioinformatics web application as a teaching tool in undergraduate bioinformatics training. Brief Bioinform 8(6):457

    Article  PubMed  CAS  Google Scholar 

  • Collins FS, Jegalian KG (1999) Genomics and the future. Sci Am 281:50–55

    Google Scholar 

  • J. Craig Venter Institute (2010) First self-replicating synthetic bacterial cell (Press release), Rockville. http://www.jcvi.org/cms/press/press-releases/full-text/article/first-self-replicatingsynthetic-bacterial-cell-constructed-by-j-craig-venter-institute-researcher/

  • Daar AS, Thorsteinsdóttir H, Martin DK, Smith AC, Nast S, Singer PA (2002) Top ten biotechnologies for improving health in developing countries. Nat Genet 32:229–232

    Article  PubMed  CAS  Google Scholar 

  • Doyle MP (ed) (2000) Academic excellence: the role of research in the physical sciences at undergraduate institutions. Research Corporation, Tucson

    Google Scholar 

  • Duann J, Nehm RH (2010) Assessing the educational efficacy of genomics modules, labs, and curricula: finding out what works. Paper presented at OCCBIO, Columbus

    Google Scholar 

  • Gabric KM (2003) Bioinformatics in the biology classroom. Retrieved from 21 Oct 2004. Accessed on 26 Apr 2012 at http://www.actionbioscience.org/education/gabric.htm

  • Greenhow C, Robelia B, Hughes JE (2009) Web 2.0 and classroom research: what path should we take now? Educ Res 38(4):246–259

    Article  Google Scholar 

  • Guadron L, Sajan AM, Plante O, George S, Gosser Y (2010) Genome science education for engineering majors. Paper presented at Fall 2010 mid-Atlantic ASEE conference, Villanova University, Villanova, 15–16 Oct 2010

    Google Scholar 

  • Handelsman J, Miller S, Pfund C (2006) Scientific Teaching. W.H. Freeman

    Google Scholar 

  • Hatfull GF, Pedulla ML, Jacobs-Sera D, Cichon PM, Foley A, Ford ME, Gonda RM, Houtz JM, Andrew J, Hryckowian AJ, Kelchner VK, Namburi S, Pajcini KV, Popovich MG, Schleicher DT, Simanek BZ, Smith AL, Zdanowicz GM, Kumar V, Peebles CL, Jacobs WR Jr, Lawrence JG, Hendrix RW (2006) Exploring the mycobacteriophage metaproteome: phage genomics as an educational platform. PLoS Genet 2(6):e92

    Article  PubMed  Google Scholar 

  • Haury DL (2000) High school biology textbooks do not meet national standards (ERIC digest). ERIC Clearinghouse for Science, Mathematics, and Environmental Education, Columbus

    Google Scholar 

  • Haury DL (2001) Learning about the human genome, Part 1: Challenge to science educators (ERIC digest). ERIC Clearinghouse for Science, Mathematics, and Environmental Education, Columbus

    Google Scholar 

  • Hulleman C, Harackiewicz JM (2009) Promoting interest and performance in high school science classes. Science 326:1410–1412

    Article  PubMed  CAS  Google Scholar 

  • Jurkowski A, Reid AH, Labov JB (2007) Metagenomics: a call for bringing a new science into the classroom (while it’s still new). CBE Life Sci Educ 6:260–265

    Article  PubMed  Google Scholar 

  • Kortsarts Y, Morris R et al. (2008) Interdisciplinary introductory course in bioinformatics. Accessed online 26 Apr 2012 at isedj.org/8/27/ISEDJ.8(27).Kortsarts.pdf

  • Krathwohl DR (2002) A revision of bloom’s taxonomy: an overview. Theory Pract 41(4):212–218

    Article  Google Scholar 

  • Labov JB (2004) From the national academies: the challenges and opportunities for improving undergraduate science education through introductory courses. Cell Biol Educ 3:212–214

    Article  PubMed  Google Scholar 

  • Labov JB, Reid AH, Yamamoto KR (2010) Integrated biology and undergraduate education: a new biology education for the twenty-first century. CBE Life Sci Educ 9:10–16

    Article  PubMed  Google Scholar 

  • Locks AM, Gregerman SR (2008) Undergraduate research as an institutional retention strategy: the University of Michigan Model. In: Taraban R, Blanton RL (eds) Creating effective undergraduate research programs in science: the transformation from student to scientist. Teachers College Press, New York, pp 11–32

    Google Scholar 

  • Lopatto D (2004) Survey of undergraduate research experiences (SURE): first findings. Cell Biol Educ 3:270–277

    Article  PubMed  Google Scholar 

  • Lopatto D, Alvarez C, Barnard D, Chandrasekaran C, Chung H-M, Du C, Eckdahl T, Goodman AL, Hauser C, Jones CJ, Kopp OR, Kuleck GA, McNeil G, Morris R, Myka JL, Nagengast A, Overvoorde PJ, Poet JL, Reed K, Regisford G, Revie D, Rosenwald A, Saville K, Shaw M, Skuse GR, Smith C, Smith M, Spratt M, Stamm J, Thompson JS, Wilson BA, Witkowski C, Youngblom J, Leung W, Shaffer CD, Buhler J, Mardis E, Elgin SCR (2008) Genomics education partnership. Science 322:684–685

    Article  PubMed  CAS  Google Scholar 

  • Masiga DK, Isokpehi RD (2004) Opportunities in Africa for training in genome science. Afr J Biotechnol 3(2):117–122

    Google Scholar 

  • Munn M, Skinner PO, Conn L, Horsma HG, Gregory P (1999) The involvement of genome researchers in high school science education. Genome Res 9(7):597–607

    PubMed  CAS  Google Scholar 

  • National Research Council (1996) The national science education standards. The National Academies Press, Washington, DC

    Google Scholar 

  • National Research Council (2000) How people learn: brain, mind, experience, and school. National Academies Press, Washington, DC

    Google Scholar 

  • National Research Council (2001) Knowing what students know. National Academies Press, Washington, DC

    Google Scholar 

  • National Research Council (2003a) Bio 2010: Transforming undergraduate education for future research biologists. National Academies Press, Washington, DC

    Google Scholar 

  • National Research Council (2003b) Engaging schools: fostering high school students’ motivation to learn. National Academy Press, Washington, DC

    Google Scholar 

  • National Research Council (2009) A new biology for the 21st century: ensuring the United States leads the coming biology revolution. The National Academies Press, Washington, DC

    Google Scholar 

  • Nehm RH, Budd AF (2006) Missing “links” in bioinformatics education: expanding students’ conceptions of bioinformatics using a biodiversity database of living & fossil reef corals. Am Biol Teach 68(7):91–97

    Article  Google Scholar 

  • Organization for Economic Cooperation and Development (OECD) (2004) The quality of the teaching workforce. Policy brief, OECD observer. Accessed on 26 Apr 2012. Available at www.oecd.org/publications/Pol_brief

  • Pestka E, Lim SH et al (2010) Education outcomes related to including genomics activities in nursing practice in Singapore. Int J Nurs Pract 16(3):282–288

    Article  PubMed  Google Scholar 

  • Ranganathan S (2009) Towards a career in bioinformatics. BMC Bioinformatics 10(Suppl 15):S1

    Article  PubMed  Google Scholar 

  • Rose MR, Oakley TH (2007) The new biology: beyond the modern synthesis. Biol Direct 2:30

    Article  PubMed  Google Scholar 

  • Rutherford FJ, Ahlgren A (1991) Science for all Americans. New York: Oxford University Press

    Article  PubMed  Google Scholar 

  • Sanger F, Air GM, Barrell BG, Brown NL, Coulson AR, Fiddes JC, Hutchison CA, Slocombe PM, Smith M (1977) Nucleotide sequence of bacteriophage X174 DNA. Nature 265:687–695

    Article  PubMed  CAS  Google Scholar 

  • Sczyrba A, Konermann S et al (2008) Two interactive bioinformatics courses at the Bielefeld University Bioinformatics Server. Brief Bioinform 9(3):243

    Article  PubMed  Google Scholar 

  • Shachak A, Fine S (2008) The effect of training on biologists acceptance of bioinformatics tools: a field experiment. J Am Soc Info Sci Technol 59(5):719–730

    Article  CAS  Google Scholar 

  • Shachak A, Ophir R et al (2005) Applying instructional design theories to bioinformatics education in microarray analysis and primer design workshops. CBE Life Sci Educ 4(3):199

    Article  Google Scholar 

  • Shaffer CD, Alvarez C, Bailery C, Barnard D, Ghalla S, Chandrasekaran C, Chandrasekaran V, Chung H, Dorer DR, Du C, Eckdahl TT, Poet JL, Frohlich D, Goodman AL, Gosser Y, Hauser C, Hooper LLM, Johnson D, Jones CJ, Kaehler M, Kokan N, Kopp OR, Kuleck GA, NcNeil G, Moss R, Myka JL, Nagengast A, Morris R, Overvoorde PJ, Shoop E, Parrish S, Reed K, Regisford EG, Revie D, Rosenwald AG, Saville K, Schroeder S, Shaw M, Skuse G, Smith C, Smith M, Spana EP, Spratt M, Stamm J, Thompson JS, Wawersik M, Wilson BA, Youngblom J, Leung W, Buhler J, Mardis ER, Lopatto D, Elgin SCR (2010) The genomics education partnership: successful integration of research into laboratory classes at a diverse group of undergraduate institutions. CBE Life Sci Educ 9:55–69

    Article  PubMed  Google Scholar 

  • Shapiro JA (2009) Revisiting the central dogma in the 21st century. Ann N Y Acad Sci 1178:6–28

    Article  PubMed  CAS  Google Scholar 

  • Slawson EE, Shaffer CD, Malone CD, Leung W, Kellmann E, Shevchek RB, Craig CA, Bloom SM, Bogenpohl J II, Dee J, Morimoto ETA, Myoung J, Nett AS, Ozsolak F, Tittiger ME, Zeug A, Mary-Lou Pardue M, Buhler J, Mardis ER, Elgin S (2006) Comparison of dot chromosome sequences from D. melanogaster and D. virilis reveals an enrichment of DNA transposon sequences in heterochromatic domains. Genome Biol 7(2):R15

    Article  PubMed  Google Scholar 

  • Takayama K et al (2005) Teaching visualizing the science of genomics. In: Gilbert JK (ed) Visualization in science education. Springer, Dordrecht, pp 217–251

    Chapter  Google Scholar 

  • Tolvanen M, Vihinen M (2004) Virtual bioinformatics distance learning suite. Biochem Mol Biol Educ 32(3):156–160

    Article  PubMed  CAS  Google Scholar 

  • Tongsima W, Tongsima S et al (2008) Outlook on Thailand’s genomics and computational biology research and development. PLoS Comput Biol 4(7):e1000115

    Article  PubMed  Google Scholar 

  • University of Minnesota (2008) Educational benefits of social networking sites uncovered. ScienceDaily. http://www.sciencedaily.com/releases/2008/06/080620133907.htm. Retrieved 28 May 2011

  • Wefer SH, Sheppard K (2008) Bioinformatics in high school biology curricula: a study of state science standards. CBE Life Sci Educ 7(1):155

    Article  PubMed  Google Scholar 

  • Zeti AMH, Shamsir MS et al (2009) Bioinformatics in Malaysia: hope, initiative, effort, reality, and challenges. PLoS Comput Biol 5(8):e1000457

    Article  PubMed  Google Scholar 

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Correspondence to David L. Haury .

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Haury, D.L., Nehm, R.H. (2012). The Global Challenge of Genomics Education: A Path to the Future. In: Nelson, K., Jones-Nelson, B. (eds) Genomics Applications for the Developing World. Advances in Microbial Ecology. Springer, New York, NY. https://doi.org/10.1007/978-1-4614-2182-5_19

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