Skip to main content

The Genetics of Virologic Response

  • Chapter
  • First Online:
Book cover Chronic Hepatitis C Virus

Abstract

The field of medicine is changing rapidly, and the future holds the potential to “personalize” treatment by determining the genome of both patients and pathogens to administer the appropriate therapies. Within the field of hepatology, multiple genetic discoveries have led to new insights into the biology of hepatitis C (HCV) infection and improved ability to predict an individual patient’s response to therapy. Major discoveries in this area include the finding of SNPs near the IL28B gene that are related to sustained virologic response (SVR) and rapid virologic response (RVR) in patients with genotype 1, spontaneous clearance of HCV after acute infection, and SVR in those patients with genotypes 2 and 3 that do not achieve an RVR. Additionally, the IL28B polymorphisms add insight into the variation of treatment response among different ethnicities, and this finding is estimated to explain approximately half of the difference in treatment response rates between patients of African-American and European-American background. Additional genetic findings including variation in the IL-6 haplotype, differences in MHC allele expression, and polymorphisms that lead to increased steatosis and insulin resistance have also provided new insights into differences in response to treatment for hepatitis C.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Chapter
USD 29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 129.00
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Hardcover Book
USD 169.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

References

  1. Manns MP, McHutchison JG, Gordon SC, et al. Peginterferon alfa-2b plus ribavirin compared with interferon alfa-2b plus ribavirin for initial treatment of chronic hepatitis C: a randomised trial. Lancet. 2001;358(9286):958–65.

    Article  PubMed  CAS  Google Scholar 

  2. Fried MW, Shiffman ML, Reddy KR, et al. Peginterferon alfa-2a plus ribavirin for chronic hepatitis C virus infection. N Engl J Med. 2002;347(13):975–82.

    Article  PubMed  CAS  Google Scholar 

  3. Hadziyannis SJ, Sette Jr H, Morgan TR, et al. Peginterferon-alpha2a and ribavirin combination therapy in chronic hepatitis C: a randomized study of treatment duration and ribavirin dose. Ann Intern Med. 2004;140(5):346–55.

    PubMed  CAS  Google Scholar 

  4. Romero-Gomez M, Del Mar Viloria M, Andrade RJ, et al. Insulin resistance impairs sustained response rate to peginterferon plus ribavirin in chronic hepatitis C patients. Gastroenterology. 2005;128(3):636–41.

    Article  PubMed  CAS  Google Scholar 

  5. Simmonds P, Holmes EC, Cha TA, et al. Classification of hepatitis C virus into six major genotypes and a series of subtypes by phylogenetic analysis of the NS-5 region. J Gen Virol. 1993;74(Pt 11):2391–9.

    Article  PubMed  CAS  Google Scholar 

  6. Bukh J, Miller RH, Purcell RH. Genetic heterogeneity of hepatitis C virus: quasispecies and genotypes. Semin Liver Dis. 1995;15(1):41–63.

    Article  PubMed  CAS  Google Scholar 

  7. Robertson B, Myers G, Howard C, et al. Classification, nomenclature, and database development for hepatitis C virus (HCV) and related viruses: proposals for standardization. International Committee on Virus Taxonomy. Arch Virol. 1998;143(12):2493–503.

    Article  PubMed  CAS  Google Scholar 

  8. Simmonds P. Genetic diversity and evolution of hepatitis C virus–15 years on. J Gen Virol. 2004;85(Pt 11):3173–88.

    Article  PubMed  CAS  Google Scholar 

  9. Gonzalez-Peralta RP, Qian K, She JY, et al. Clinical implications of viral quasispecies heterogeneity in chronic hepatitis C. J Med Virol. 1996;49(3):242–7.

    Article  PubMed  CAS  Google Scholar 

  10. Donlin MJ, Cannon NA, Yao E, et al. Pretreatment sequence diversity differences in the full-length ­hepatitis C virus open reading frame correlate with early response to therapy. J Virol. 2007;81(15):8211–24.

    Article  PubMed  CAS  Google Scholar 

  11. Cannon NA, Donlin MJ, Fan X, Aurora R, Tavis JE. Hepatitis C virus diversity and evolution in the full open-reading frame during antiviral therapy. PLoS One. 2008;3(5):e2123.

    Article  PubMed  Google Scholar 

  12. Aurora R, Donlin MJ, Cannon NA, Tavis JE. Genome-wide hepatitis C virus amino acid covariance networks can predict response to antiviral therapy in humans. J Clin Invest. 2009;119(1):225–36.

    PubMed  CAS  Google Scholar 

  13. Yee LJ, Im K, Borg B, Yang H, Liang TJ. Interleukin-6 haplotypes and the response to therapy of chronic hepatitis C virus infection. Genes Immun. 2009;10(4):365–72.

    Article  PubMed  CAS  Google Scholar 

  14. McCarthy JJ, Li JH, Thompson A, et al. Replicated association between an IL28B gene variant and a sustained response to pegylated interferon and ribavirin. Gastroenterology. 2010;138(7):2307–14.

    Article  PubMed  Google Scholar 

  15. O’Brien T. BH, Pfeiffer R, et al. Association of IL28B genotype with virological response to pegylated-interferon plus ribavirin in patients with advanced chronic hepatitis C enrolled in the HALT-C trial. J Hepatol. 2010;52 suppl 1:S454.

    Article  Google Scholar 

  16. Rauch A, Kutalik Z, Descombes P, et al. Genetic variation in IL28B is associated with chronic hepatitis C and treatment failure: a genome-wide association study. Gastroenterology. 2010;138(4):1338–45. 1345 e1331-1337.

    Article  PubMed  CAS  Google Scholar 

  17. Halfon P, Bourlière M, Ouzan D, et al. 1167 IL-28 Gene variation predicts who will respond to interferon-based treatment of chronic hepatitis c in a french cohort. J Hepatol. 2010;52 Suppl 1:S451–1.

    Article  Google Scholar 

  18. Stattermayer AF, Stauber R, Hofer H, et al. Impact of IL28B genotype on the early and sustained virologic response in treatment-naive patients with chronic hepatitis C. Clin Gastroenterol Hepatol. 2010;9(4):344–50.e2. doi:10.1016/j.cgh.2010.07.019.

    Google Scholar 

  19. Muir AJ, Bornstein JD, Killenberg PG. Peginterferon alfa-2b and ribavirin for the treatment of chronic hepatitis C in blacks and non-Hispanic whites. N Engl J Med. 2004;350(22):2265–71.

    Article  PubMed  CAS  Google Scholar 

  20. Ge D, Fellay J, Thompson AJ, et al. Genetic variation in IL28B predicts hepatitis C treatment-induced viral clearance. Nature. 2009;461(7262):399–401.

    Article  PubMed  CAS  Google Scholar 

  21. Thomas DL, Thio CL, Martin MP, et al. Genetic variation in IL28B and spontaneous clearance of hepatitis C virus. Nature. 2009;461(7265):798–801.

    Article  PubMed  CAS  Google Scholar 

  22. Suppiah V, Moldovan M, Ahlenstiel G, et al. IL28B is associated with response to chronic hepatitis C interferon-alpha and ribavirin therapy. Nat Genet. 2009;41(10):1100–4.

    Article  PubMed  CAS  Google Scholar 

  23. Tanaka Y, Nishida N, Sugiyama M, et al. Genome-wide association of IL28B with response to pegylated interferon-alpha and ribavirin therapy for chronic hepatitis C. Nat Genet. 2009;41(10):1105–9.

    Article  PubMed  CAS  Google Scholar 

  24. Robek MD, Boyd BS, Chisari FV. Lambda interferon inhibits hepatitis B and C virus replication. J Virol. 2005;79(6):3851–4.

    Article  PubMed  CAS  Google Scholar 

  25. Marcello T, Grakoui A, Barba-Spaeth G, et al. Interferons alpha and lambda inhibit hepatitis C virus replication with distinct signal transduction and gene regulation kinetics. Gastroenterology. 2006;131(6):1887–98.

    Article  PubMed  Google Scholar 

  26. Muir AJ, Shiffman ML, Zaman A, et al. Phase 1b study of pegylated interferon lambda 1 with or without ribavirin in patients with chronic genotype 1 hepatitis C virus infection. Hepatology. 2010;52(3):822–32.

    Article  PubMed  CAS  Google Scholar 

  27. Ghany MG, Strader DB, Thomas DL, Seeff LB. Diagnosis, management, and treatment of hepatitis C: an update. Hepatology. 2009;49(4):1335–74.

    Article  PubMed  CAS  Google Scholar 

  28. Mangia A, Thompson AJ, Santoro R, et al. An IL28B polymorphism determines treatment response of hepatitis C virus genotype 2 or 3 patients who do not achieve a rapid virologic response. Gastroenterology. 2010;139(3):821–7. 827 e821.

    Article  PubMed  CAS  Google Scholar 

  29. Thompson AJ, Muir AJ, Sulkowski MS, et al. Interleukin-28B polymorphism improves viral kinetics and is the strongest pretreatment predictor of sustained virologic response in genotype 1 hepatitis C virus. Gastroenterology. 2010;139(1):120–9.e118.

    Google Scholar 

  30. Yee LJ, Im K, Wahed AS, et al. Polymorphism in the human major histocompatibility complex and early viral decline during treatment of chronic hepatitis C. Antimicrob Agents Chemother. 2009;53(2):615–21.

    Article  PubMed  CAS  Google Scholar 

  31. Tillmann HL, Thompson AJ, Patel K, et al. A Polymorphism Near IL28B Is Associated With Spontaneous Clearance of Acute Hepatitis C Virus and Jaundice. Gastroenterology. 2010;139(5):1586–92.

    Article  PubMed  CAS  Google Scholar 

  32. Grebely J, Petoumenos K, Hellard M, et al. Potential role for Interleukin-28B genotype in treatment decision-making in recent hepatitis C virus infection. Hepatology. 2010;52(4):1216–24.

    Article  PubMed  CAS  Google Scholar 

  33. Iuliano AD, Feingold E, Wahed AS, et al. Host genetics, steatosis and insulin resistance among African Americans and Caucasian Americans with hepatitis C virus genotype-1 infection. Intervirology. 2009;52(1):49–56.

    Article  PubMed  Google Scholar 

  34. Kwo PY, Lawitz EJ, McCone J, et al. Efficacy of boceprevir, an NS3 protease inhibitor, in combination with peginterferon alfa-2b and ribavirin in treatment-naive patients with genotype 1 hepatitis C infection (SPRINT-1): an open-label, randomised, multicentre phase 2 trial. Lancet. 2010;376(9742):705–16.

    Article  PubMed  CAS  Google Scholar 

  35. McHutchison JG, Everson GT, Gordon SC, et al. Telaprevir with peginterferon and ribavirin for chronic HCV genotype 1 infection. N Engl J Med. 2009;360(18):1827–38.

    Article  PubMed  CAS  Google Scholar 

  36. Fellay J, Thompson AJ, Ge D, et al. ITPA gene variants protect against anaemia in patients treated for chronic hepatitis C. Nature. 2010;464(7287):405–8.

    Article  PubMed  CAS  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Andrew J. Muir MD, MHS .

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2012 Springer Science+Business Media, LLC

About this chapter

Cite this chapter

Jazwinski, A.B., Muir, A.J. (2012). The Genetics of Virologic Response. In: Shiffman, M. (eds) Chronic Hepatitis C Virus. Springer, New York, NY. https://doi.org/10.1007/978-1-4614-1192-5_15

Download citation

  • DOI: https://doi.org/10.1007/978-1-4614-1192-5_15

  • Published:

  • Publisher Name: Springer, New York, NY

  • Print ISBN: 978-1-4614-1191-8

  • Online ISBN: 978-1-4614-1192-5

  • eBook Packages: MedicineMedicine (R0)

Publish with us

Policies and ethics