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Advances in Soybean Breeding

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Genetics and Genomics of Soybean

Part of the book series: Plant Genetics and Genomics: Crops and Models ((PGG,volume 2))

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References

  • Arahana, V.S., Garef, G.L., Specht, J.E., Steadman, J.R., and Eskridge, K.M. (2001) Identification of QTLs for resistance to Sclerotinia sclerotiorum in soybean. Crop Sci. 41, 180–188.

    CAS  Google Scholar 

  • Arumuganathan, K. and Earle, E.D. (1991) Nuclear DNA content of some important plant species. Plant Mol. Biol. Rep. 9, 208–219.

    Article  CAS  Google Scholar 

  • Ashfield T., Saghai Maroof, M.A., Webb, D.M., Innes, R.W., Keim, P., Danzer, J.R., Held, D., and Clayton, K. (1998) Rpg1, a soybean gene effective against races of bacterial blight, maps to a cluster of previously identified disease resistance genes. Theor. Appl. Genet. 96, 1013–1021.

    Article  CAS  Google Scholar 

  • Bachman, M.S., Tamulonis, J.P., Nickell, C.D., and Bent, A.F. (2001) Molecular markers linked to brown stem rot resistance genes, Rbs1 and Rbs2 in soybean. Crop Sci. 41, 527–535.

    CAS  Google Scholar 

  • Bhatnagar, S., King, C.A., Purcell, L., Ray, J.D. (2005) Identification and mapping of quantitative trait loci associated with crop responses to water-deficit stress in soybean [Glycine max (L.) Merr.]. The ASA-CSSA-SSSA International Annual Meeting (Abstract), November 6–10, 2005. p 9.

    Google Scholar 

  • Bilyeu, K., Palavalli, L., Sleper, D., and Beuselinck, P. (2003) Three microsomal omega-3 fatty acid desaturase genes contribute to soybean linolenic acid levels. Crop Sci. 43, 1833–1838.

    CAS  Google Scholar 

  • Bilyeu, K., Palavalli, L., Sleper, D., and Beuselinck, P. (2005) Mutations in soybean microsomal omega-3 fatty acid desaturase genes reduce linolenic acid concentration in soybean seeds. Crop Sci. 45, 1830–1836.

    Article  CAS  Google Scholar 

  • Birt, D.F., Hendrick, S. and Alekel, D.L. (2004) Soybean and the prevention of chronic human disease. In: H.R. Boerma and J. E. Specht (Eds), Soybeans: Improvement, Production, and Uses. Agronomy Monographs 3rd ed. No. 16, ASA-CSSA-SSSA, Madison, WI, USA,pp.1047–1117.

    Google Scholar 

  • Blanc, G. and Wolfe, K.H. (2004) Wide spread paleoploidy in model plant species inferred from age distributions of duplicate genes. Plant Cell. 16, 1667–1678.

    Article  PubMed  CAS  Google Scholar 

  • Boerma, H. R. (1979) Comparison of past and recently developed soybean cultivars in maturity groups VI, VII and VIII. Crop Sci. 19, 611–613.

    Google Scholar 

  • Boyer, J.S., Johnson, R.R., and Saupe, S.G. (1980) Afternoon water deficits and grain yields in old and new soybean cultivars. Agron. J. 72, 981–986.

    Google Scholar 

  • Brummer, E.C., Greaf, G.L., Orf, J., Wilcox, J.R., and Shoemaker, R.C. (1997) Mapping QTL for seed protein and oil content in eight soybean populations. Crop Sci. 37, 370–378.

    Google Scholar 

  • Burnham, K.D., Dorrance, A.E., Francis, D.M., Fioritto, R.J., and St. Martin, S.K. (2003) A new locus in soybean for resistance to Phytophthora sojae. Crop Sci. 43, 101–105.

    CAS  Google Scholar 

  • Burton, J.W. (1987) Soybean [(Glycine max (L.) Merr.)]. Field Crop Res. 53, 171–186.

    Article  Google Scholar 

  • Cahill, D.J. and Schmidt, D.H. (2004) Use of marker assistant selection in a product development breeding program. Proceedings of the 4th International Crop Science Congress, 26 Sept- 1 Oct 2004, Brisbane, Australia. ({www.cropscience.org.au}).

    Google Scholar 

  • Carter Jr., T. E., Nelson, R. L., Sneller, C. H. and Cui, Z. (2004) Genetic diversity in soybean. In: H.R. Boerma and J. E. Specht (Eds), Soybeans: Improvement, Production, and Uses. Agronomy Monographs 3rd ed. No. 16, ASA-CSSA-SSSA, Madison, WI, USA, pp. 303–416.

    Google Scholar 

  • Carlson, J.B., and Lersten, N.R. (1987) Reproductive morphology. In: J.R. Wilcox (Ed.), Soybeans: Improvement, Production, and Uses. Agronomy Monographs 2nd ed. No. 16, American Society of Agronomy (ASA), Madison, WI, USA, pp. 95–134.

    Google Scholar 

  • Chakraborthy, N., Curley, J., Neece, D., Diers, B. and Nelson, R. L. (2006) QTLs for soybean seed yield and agronomic traits in populations derived from exotic lines. Poster abstract. Biennial conference on the molecular and cellular biology of the soybean, August 5–8, 2006, Lincoln, Nebraska.

    Google Scholar 

  • Chang, R, Qiu, L., Sun, J., Chen, Y., Li, X. and Xu, Z. (1999) Collection and conservation of soybean germplasm in China. In. H. E. Kauffman (Ed). Proceedings of the World Soybean Conference VI. Superior Printing, Champange, Illinois, USA. pp. 172–176.

    Google Scholar 

  • Chen, Z., and Shoemaker, R.C. (1998) Four genes affecting seed traits in soybeans map to linkage group F. J. Heredity. 89, 211–215.

    Article  CAS  Google Scholar 

  • Choi, I-Y., Hyten, D.L., Matukumalli, L.K., Song, Q., Chaky, J.M., Quigley, C.V., Chase, K., Lark, K.G., Reiter, R.S., Yoon, Hwang, E-Y., Yi, S-I., Young, N.D., Shoe,amker, R.C., Tassell, C.P., Specht, J.E., and Cregan, P. B. (2007) A soybean transcript map: gene distribution, haplotype and Single-nucleotide polymorphism (SNP) analysis. Genetics. 176, 685–696.

    Google Scholar 

  • Chung, J., Babka, H.L., Graef,G.L., Staswick, P.E., Lee, D.J., Cregan, P.B., Shoemaker, R.C., and Specht, J.E. (2003) The seed protein, oil, and yield QTL on soybean linkage group I. Crop Sci. 43, 1053–1067.

    CAS  Google Scholar 

  • Concibido, V.C., Diers, B.W., and Arelli, P.R. (2004) A decade of QTL mapping for cyst nematode resistance in soybean. Crop Sci. 44:1121–1131.

    CAS  Google Scholar 

  • Concibido, V.C., La Vallee, B., McLaird, P., Pineda, N., Meyer, J., Hummel, L., Yang, J., Wu, K., and Delannay, X. (2003) Introgression of a quantitative trait locus for yield from Glycine soja in to commercial soybean cultivars. Theor. Appl. Genet. 106, 575–582.

    CAS  Google Scholar 

  • Concibido, V.C., Denny, R., Lange, D., Danesh, D., Orf, J., and Young, N. (1997) Genome mapping on soybean cyst nematode resistance genes in Peking, PI90763, and PI88788 using DNA markers. Crop Sci. 37, 258–264.

    CAS  Google Scholar 

  • Cregan, P.B., Mudge, J., Fickus, E.W., Danesh, D., Denny, R. and Young, N.D. (1999) Two simple sequence repeat markers to select for soybean cyst nematode resistance conditioned by the rhg1 locus. Theor. Appl. Genet. 99, 811–818.

    Article  CAS  Google Scholar 

  • Demirbas, A., Cregan, P.B., Shoemaker, R.C., Specht, J.E., Graef, G.L., Rector, B.G., Lohnes, D.G., and Fioritto, R.J. (2001) Simple sequence repeat markers linked to the soybean Rps genes for phytophthora resistance. Crop Sci. 41, 1220–1227.

    CAS  Google Scholar 

  • Devine, T.E., and Kuykendall, L.D. (1996) Host genetic control of symbiosis in soybean (Glycine max L.). Plant Soil. 186, 173–187.

    Article  CAS  Google Scholar 

  • Diers, B. (2006) Staying ahead of SCN, alternative sources of resistance. Field Day 2006, University of Illinois, found at http://agronomyday.cropsci.uiuc.edu/2006/tour a/SCN/ (verified on 10-03-07).

    Google Scholar 

  • Diers, B.W., Keim, P., Fehr, W.R., and Shoemaker, R.C. (1992) RFLP analysis of soybean seed protein and oil content. Theor. Appl. Genet. 83, 608–612.

    Article  Google Scholar 

  • Dreher, K., Khairallah, M., Ribaut, J-M. and Morris, M. (2003) Money matters (I) costs of field and laboratory procedures associated with conventional and marker-assisted maize breeding at CIMMYT. Mol. Breeding. 11, 221–234.

    Article  Google Scholar 

  • Falconer, D.S. (1981) Introduction to quantitative genetics. 2nd ed. Longman Inc., New York.

    Google Scholar 

  • Fasoula, V.S., Harris, D.K., and Boerma, H.R. (2005) Validation and designation of quantitative trait loci for seed protein, seed oil, and seed weight from two soybean populations. Crop Sci. 44, 1218–1225.

    Google Scholar 

  • Fulton, T.M., Grandillo, S., Beck-Bunn, T., Friedman, E., Frampton, A., Lopez, J., Petiard, J., Uhlig, J., Zamir, D., and Tanksley, S.D. (2000) Advanced backcross QTL analysis of a Lycopersicon times Lycopersicon parviflorum cross. Theor. Appl. Genet. 100, 1025–1042.

    Article  CAS  Google Scholar 

  • Gai, J., Zhao, T., and Qiu, J. (1997) A review on the advances of soybean breeding since 19981 in China. In: Seed industry and agricultural development, CAASS. China Agric. Press, Beijing, China, pp. 168–174.

    Google Scholar 

  • Githiri, S.M., Watanabe, S., Harada, K., and Takahashi, R. (2006) QTL analysis of flooding tolerance in soybean at an early vegetative growth stage. Plant Breed. 125, 613–618.

    Article  CAS  Google Scholar 

  • Gizlice, Z., Carter, T.E., and Burton, J.W. (1994) Genetic base for North American public soybean cultivars released between 1947 and 1998. Crop Sci. 34, 1143–1151.

    Google Scholar 

  • Guzman, P.S., Diers, B.W., Neece, D.J., St.Martin, S.K., LeRoy, A.R., Grau, C.R., Hughes, T.J., and Nelson, R.L. (2007) QTL associated with yield in three backcross-derived populations of soybean. Crop Sci. 47, 111–122.

    Article  CAS  Google Scholar 

  • Hartwig, E.E. (1973) Varietal development. In: B.E. Caldwell (Ed.), Soybeans: improvement, production, and uses. Publication No. 16, American Society of Agronomy (ASA), Madison, WI, USA, pp. 187–210.

    Google Scholar 

  • Hayes, A.J., Ma, G.R., Buss, G.R., and Maroof, M.A.S. (2000) Molecular marker mapping of RSV4, a gene conferring resistance to all known strains of soybean mosaic virus. Crop Sci. 40, 1434–1437.

    CAS  Google Scholar 

  • Hegstad, J.M., Nickell, C.D., and Vodkin. L.O. (1998) Identifying resistance to phytophthora sojae in selected soybean accessions using RFLP techniques. Crop Sci. 38, 50–55.

    Google Scholar 

  • Hegstad, J.M., Tarter, J.A., Vodkin, L.O., and Nickell, C.D. (2000) Positioning the wp flower color locus on the soybean genome map. Crop Sci. 40, 534–537.

    CAS  Google Scholar 

  • Hill, C.B., Li, Y., and Hartman, G.L. (2006) A single dominant gene for resistance to the soybean aphid in the soybean cultivar Dowling. Crop Sci. 46, 1601–1605.

    Article  Google Scholar 

  • Hymowitz, T. (2004) Speciation and cytogenetics. In: H.R. Boerma and J. E. Specht (Eds), Soybeans: Improvement, Production, and Uses. Agronomy Monographs 3rd ed. No. 16, ASA-CSSA-SSSA, Madison, WI, USA, pp. 97–136.

    Google Scholar 

  • Hymowitz, T. (1990) Soybean: The success story. In: J. Janick and J. E. Simon (Eds), Advances in new crops. Timber Press, Portland, OR, USA, pp. 159–163.

    Google Scholar 

  • Hyten, D.L., and Cregan, P.B. (2006) Saturation of the rhg1 genomic region with SNP markers to determine linkage drag in resistant soybean cultivars and to demonstrate association analysis in soybean. International Plant and Animal Genome (PAG) Conference. January 13–17, 2006, San Diego, CA. p. 414.

    Google Scholar 

  • Hyten, D. L., Pantalone, V.R., Sams, C.E., Saxton, A.M., Landau-Ellis, D., Stefaniak, T.R., and Schmidt, M.E. (2004) Seed quality QTL in a prominent soybean population. Theor. Appl. Genet.109:552–561.

    Article  PubMed  CAS  Google Scholar 

  • Hyten, D. L., Hartman, G. L., Nelson, R. L., Frederick, R. D., Concibido, V. C., Narvel, J. M., and Cregan, P. B. (2007) Map Location of the Rpp1 Locus That Confers Resistance to Soybean Rust in Soybean. Crop Sci. 47, 837–838.

    CAS  Google Scholar 

  • James, C. (2006) global status of commercialized biotech/GM crops- 2005, ISAAA Briefs no 34–2005, Ithaca, New York, USA.

    Google Scholar 

  • Kabelka, E.A., Carlson, S.R., and Diers, B.W. (2005) Localization of two loci that confer resistance to soybean cyst nematode from Glycine soja PI 468916. Crop Sci. 45, 2473–2481.

    Article  CAS  Google Scholar 

  • Karakaya, H.C., tang, Y., Cregan, P.B. and Knap, H.T. (2002) Molecular mapping of the fasciation mutation in soybean in soybean, Glycine max (Leguminose). Am. J. Bot. 89, 559–565.

    Article  CAS  Google Scholar 

  • Khush, G. S. (2005). What it will take to feed 5.0 billion rice consumers in 2030. Plant Mol. Biol. 59, 1–6.

    Article  PubMed  CAS  Google Scholar 

  • Kiang, Y.T. (1990) Linkage analysis of Pgd 1, Pgi 1, pod color (L1), and determinate stem (dt1) loci on soybean linkage group 5. J. Heredity. 81, 401–404.

    Google Scholar 

  • Kim, M. Y., Van, K., Lestari, P., Moon, J. K., and Lee, S. H. (2005) SNP identification and SNAP marker development for a GmNARK gene controlling supernodulation in soybean, Theor. Appl. Genet. 110, 1003–1010.

    Article  PubMed  CAS  Google Scholar 

  • Kisha, T.J., Sneller, C.H., and Diers, B.W. (1997) Relationship between genetic distance among parents and genetic variance in populations of soybean. Crop Sci. 37, 1317–1325.

    Google Scholar 

  • Kuchel, H., Ye, G., Fox, R. and Jefferies, S. (2005) Genetic and economic analysis Sof a targeted marker-assisted wheat breeding strategy. Mol. Breeding. 16, 67–78.

    Article  Google Scholar 

  • Lee, G.J., Carter, T.E. Jr., Li, Z., Gibbs, M.O., Boerma, H.R., Villagarcia, M.R., and Zhou, X. (2004) A major QTL conditioning salt tolerance in S-100 soybean and descendent cultivars. Theor. Appl. Genet. 109, 1610–1619.

    Article  PubMed  CAS  Google Scholar 

  • Lee, S.H., Bailey, M.A., Mian, M.A.R., Carter, Jr., T.E., Ashley, D.A., Hussey, R.S., Parrott, W.A., and Boerma, H.R. (1996) Identification of quantitative trait loci for plant height, lodging, and maturity in a soybean population segregating for growth habit. Theor. Appl. Genet. 92,516–523.

    Google Scholar 

  • Lee, G-J., X. Wu, Shannon, J.G., Sleper, D.A. and Nguyen, H.T. (2006). Genome mapping and molecular breeding in plants: soybean. In: C. Kole (ed). Genome mapping and molecular breeding in plants, Vol. 2 (oilseeds), Springer, USA.

    Google Scholar 

  • Lewers, K.S., Crane, E.H., Bronson, C.R., Schupp, J.M., Keim, P, and Shoemaker, R.C. (1999) Detection of linked QTL for soybean brown stem rot resistance in ‘BSR101’ as expressed in a growth chamber environment. Mol. Breed. 5, 33–42.

    Article  Google Scholar 

  • Li, D., and Pfeiffer, T. (2006) Soybean QTLs for yield and yield components associated with Glycine soja alleles. Abstract. The 11$^th$ Biennial conference on the molecular and cellular biology of the soybean, August 5–8, 2006, Lincoln, Nebraska.

    Google Scholar 

  • Li, X-P., Tian, A-G., Luo, G-Z., Gong, Z-Z., Zhang, J-S., and Chen, S-Y. (2005) Soybean DRE-binding transcription factors that are responsive to abiotic stresses. Theor. Appl. Genet. 110, 1355–1362.

    Article  PubMed  CAS  Google Scholar 

  • Liu, K. (1997) Soybeans: Chemistry, Technology and Utilization. Aspen Publishers, Gaithersburg, Maryland, USA. pp. 532.

    Google Scholar 

  • Lohnes, D.G., and Schmitthenner, A.F. (1997) Position of the phytophthora gene Rps7 on the soybean molecular map. Crop Sci. 37, 555–556.

    CAS  Google Scholar 

  • Luedders, V.D. (1977) Genetic improvement in yield of soybean. Crop Sci. 17, 971–972.

    Google Scholar 

  • Luo, G-Z., Wang, H-W., Huang, J., Tian, A-G., Wang, Y-J., Zhang, J-S., and Chen, S-Y. (2005) A putative plasma membrane cation/protein antiporter from soybean confers salt tolerance in Arabidopsis. Plant Mol. Biol. 59, 809–820.

    Article  PubMed  CAS  Google Scholar 

  • Luquez, V.M., and Guiamet, J.J. (2001) Effects of the ’stay green’ genotype GGd1d1d2d2 on leaf gas exchange, dry matter accumulation and seed yield in soybean (Glycine max L. Merr.). Ann. Bot. 87, 313–318.

    Article  CAS  Google Scholar 

  • Mackill, D.J. (2003) Applications of genomics to rice breeding. Int. Rice Res. Note. 28, 9–15.

    Google Scholar 

  • Mansur, L.M., Lark, K.G. Kross, H., and Oliveira, A. (1993) Internal mapping of quantitative trait loci for reproductive, morphological, and seed traits of soybean (Glycine max L.). Theor. Appl. Genet. 86, 907–913.

    CAS  Google Scholar 

  • Mansur, L.M., Orf, J.H., Chase, K., Jarvik, T., Cregan, P.B., and Lark, K.G. (1996) Genetic mapping of agronomic traits using recombinant inbred lines of soybean. Crop Sci. 36, 1327–1336.

    CAS  Google Scholar 

  • Matthews, B.F., Devine, T.E., Weisemann, J.M., Beard, H.S., Lewers, K.S., McDonald, M.H., Park, Y.B., Maiti, R., Lin, J.J., Kuo, J., Pedroni, M.J., Cregan, P.B., and Saunders, J.A. (2001) Incorporation of sequenced cDNA and genomic markers into the soybean genetic map. Crop Sci. 41, 516–521.

    CAS  Google Scholar 

  • Meksem, K., Doubler, T.W., Chancharoenchai, K., Njiti, V.N., Chang, S.J.C., Arelli, A.P.R., Cregan, P.E., Gray, L.E., Gibson, P.T., and Lightfoot, D.A. (1999) Clustering among loci underlying soybean resistance to Fusarum solani, SDS and SCN in near-isogenic lines. Theor. Appl. Genet. 99, 1131–1142.

    Article  CAS  Google Scholar 

  • Mian, M.A.R., Ashley, D.A., and Boerma, H.R. (1998) An additional QTL for water use efficiency in soybean. Crop Sci. 38, 390–393.

    Google Scholar 

  • Mian, M.A.R., Mailey, M.A., Ashley, D.A., Wells, R., Carter, T.E., Parrot, W.A., and Boerma, H.R. (1996) Molecular markers associated with water use efficiency and leaf ash in soybean. Crop Sci. 36, 1252–1257.

    CAS  Google Scholar 

  • Mian, M.A.R., Wang, T., Phillips, D.V., Alvernaz, J. and Boerma, R.R. (1999) Molecular mapping of the Rcs3 gene for resistance to frogeye leaf spot in soybean. Crop Sci. 39, 1687–1691.

    CAS  Google Scholar 

  • Moncada, P., Martinez, C.P., Borrero, J., Chatel, M., Gauch, H.Jr., Guimaraes, E., Tohme, J., and McCouch, R. (2001) Quantitative trait loci for yield and yield components in an Oryza sativa times Oryza rufipogon BC2F2 population evaluated in an upland environment. Theor. Appl. Genet. 102, 41–52.

    Article  CAS  Google Scholar 

  • Moreau, L., Lamarie, S., Charcosset, A. and Gallais. A. (2000) Economic efficiency of one cycle of marker-assisted selection. Crop Sci. 40, 329–337.

    Google Scholar 

  • Morris, M., Dreher, K.. Ribaut, J-M. and Khairallah, M. (2003) Money matters (II): costs of maize inbred line conversion schemes at CIMMYT using conventional and marker-assisted selection. Mol. Breed. 11, 235–247.

    Article  Google Scholar 

  • Morrison, M. J., Voldeng, H.D. and Cober, R.R. (2000) Agronomic changes from 58 years of genetic improvement of short-season soybean cultivars in Canada. Agron. J. 92,780–784.

    Google Scholar 

  • Morrison, M. J., Voldeng, H.D. and Cober, R.R. (1999) Physiological changes from 58 years of genetic improvement of short-season soybean cultivars in Canada. Agron. J. 91,685–689.

    Google Scholar 

  • Narvel, J.M., Lee, S.H., Boerma, H.R., Wang, T., Jakkula, L.R., and Philips, D.V. (2001) Molecular mapping of Rxp conditioning reaction to bacterial pustule in soybean. J. Hered. 92,267–270.

    Article  PubMed  CAS  Google Scholar 

  • Nichols, D.M., Glover, K.D., Carlson, S.R., Specht, J.E., and Diers, B.W. (2006) Fine mapping of a seed protein QTL on soybean linkage map I and its correlated effects on agronomic traits. Crop Sci. 46, 834–839.

    Article  Google Scholar 

  • Orf, J.H., Chase, K., Jarvik, T., Mansur, L.M., Cregan, P.B., Adler, F.R., Lark, K.G. (1999) Genetics of soybean agronomic traits. I. Comparison of three related recombinant inbred populations. Crop Sci. 39, 1642–1651.

    Google Scholar 

  • Orf, J. H., Diers, B. W. and Boerma, H. R. (2004) Genetic improvement: conventional and molecular-based strategies. In: H.R. Boerma and J. E. Specht (Eds), Soybeans: Improvement, Production, and Uses. Agronomy Monographs 3rd ed. No. 16, ASA-CSSA-SSSA, Madison, WI, USA, pp. 417–450.

    Google Scholar 

  • Ortiz-Perez, E., Horner, H. T., Hanlin, S. J. and Palmer, R. G. (2006a) Insect-mediated seed-set evaluation of 21 soybean lines segregating for male sterility at different loci. Euphytica 152, 351–360.

    Article  Google Scholar 

  • Ortiz-Perez, E., Horner, H. T., Hanlin, S. J. and Palmer, R. G. (2006b) Evaluation of insect-mediated seed set among soybean lines segregating for male sterility at the ms6 locus. Field Crops Res. 97, 353–362.

    Article  Google Scholar 

  • Palmer, R.G., Gai, J., Sun, H., and Burton, J.W. (2001) Production and evaluation of hybrid soybean. Plant Breed. Rev. 21, 263–307.

    CAS  Google Scholar 

  • Palmer, R.G., Pfeiffer, T.W., Buss, G.R., and Kilen, T.C. (2004) Qualitative genetics. In: Boerma HR, Specht JE (Eds) Soybeans: Improvement, Production, and Uses. Agronomy Monographs 3rd ed. No. 16, ASA-CSSA-SSSA, Madison, WI, USA, pp. 133–233.

    Google Scholar 

  • Panthee, D.R., Pantalone, V.R., West, D.R., Saxton, A.M., and Sams, C.E. (2005) Quantitative trait loci for seed protein and oil concentration, and seed size in soybean. Crop Sci. 45, 2015–2022.

    Article  CAS  Google Scholar 

  • Panthee, D.R., Pantalone, V.R., and Saxton, A.M. (2006) Modifier QTL for fatty acid composition in soybean oil. Euphytica 152, 67–73.

    Article  CAS  Google Scholar 

  • Panthee, D.R., Pantalone, V.R., Saxton, A.M., West, D.R., and Sams, C.E. (2007) Quantitative trait loci for agronomic traits in soybean. Plant Breed. 126:51–57.

    Article  CAS  Google Scholar 

  • Patzoldt, M.E., Tyagi, R.K., Hymowitz, T., Miles, M.R., Hartman, G.L., and Frederick, R.D. (2007) Soybean rust resistance derived from Glycine tomentella in amphiploid hybrid lines. Crop Sci. 47, 158–161.

    Article  Google Scholar 

  • Patzoldt, M.E., Carlson, S.R., and Diers, B.W. (2005a) Characterization of resistance to brown stem rot of soybean in five accessions from central China. Crop Sci. 45, 1092–1095

    Article  Google Scholar 

  • Patzoldt, M.E., Grau, C.R., Stephens, P.A., Kurtzweil, N.C., Carlson, S.R. and Diers, B.W. (2005b) Localization of a quantitative trait locus providing brown stem rot resistance in the soybean cultivar Bell. Crop Sci. 45, 1241–1248.

    Article  CAS  Google Scholar 

  • Polzin, K.M., Shoemaker, R.C., Nickell, C.D., and Lohnes, D.G. (1994) Integration of Rps2, Rmd, and Rj2 into linkage group J of the soybean molecular map. J. Hered. 85, 300–303.

    CAS  Google Scholar 

  • Qiu, B. X., Arelli, P.R. and Sleper, D.A. (1999) RFLP markers associated with soybean cyst nematode resistance and seed composition in a Peking × Essex population. Theor. Appl. Genet. 96, 786–790.

    Google Scholar 

  • Quarrie, S. A. (1996). New molecular tools to improve the efficiency of breeding for increased drought resistance, Plant Growth Regul. 20, 167–178.

    Article  CAS  Google Scholar 

  • Rector, B.G., All, J.N., Parrott, W.A., and Boerma, H.R. (1998) Identification of molecular markers associated with quantitative trait loci for soybean resistance to corn earworm. Theor. Appl. Genet. 96, 786–790.

    Article  CAS  Google Scholar 

  • Rector, B.G., All, J.N., Parrott, W.A., and Boerma, H.R. (1999) Quantitative trait loci for antixenosis resistance to corn earworm in soybean. Crop Sci. 39, 531–538.

    Google Scholar 

  • Rector, B.G., All, J.N., Parrott, W.A., and Boerma, H.R. (2000) Quantitative trait loci for antibiosis resistance to corn earworm in soybean. Crop Sci. 40, 233–238.

    Google Scholar 

  • Reyna, N., Cornelious, B., Shannon, J.G., and Sneller, C.H. (2003) Evaluation of a QTL for waterlogging tolerance in southern soybean germplasm. Crop Sci. 43, 2077–2082.

    Google Scholar 

  • Ribaut, J.-M., and Ragot, M. (2007) Marker-assisted selection to improve drought adaptation in maize: the backcross approach, perspectives, limitations and alternatives. J. Expt. Bot. 58,351–360.

    Article  CAS  Google Scholar 

  • Riggs, R.D., Wang, S., Singh, R.J., Hymowitz, T. (1998) Possible transfer of resistance to Heterodera glycines from Glycine tomentella to Glycine max. J. Nematol. 30, 547–552.

    Google Scholar 

  • Sebolt, A.M., Shoemaker, R.C., and Diers, B.W. (2000) Analysis of a quantitative trait locus allele from wild soybean that increases seed protein concentration in soybean. Crop Sci. 40,1438–1444.

    CAS  Google Scholar 

  • Sendra, M., Jumonji, A., Yumoto, S., Ishikawa, R., Harada, T., Niizeki, M., and Akada, S. (2002) Analysis of the duplicated CHS1 gene related to the suppression of the seed coat pigmentation in yellow soybeans. Theor. Appl. Genet. 104, 1086–1091.

    Article  CAS  Google Scholar 

  • Schlueter, J. A., Dixon, P., Granger, C., Grant, D., Clark, L., Doylee, J. J. and Shoemaker, R. C. (2004) Mining EST databases to resolve evolutionary events in major crop species. Genome. 47, 868–876.

    Article  PubMed  CAS  Google Scholar 

  • Schmidt, D.H. and Cahill, D. J. (2006) Marker-assisted selection and its contribution to soybean product development- glancing back, looking forward. Abstract. The 11 th Biennial conference on the molecular and cellular biology of the soybean, August 5–8, 2006, Lincoln, Nebraska.

    Google Scholar 

  • Senda, M., Jumonji, A., Yumoto, S., Ishikawa, R., Harada, T., Niizeki, M and Akada, S. (2002) Analysis of the duplicated CHS1 gene related to the suppression of the seed coat pigmentation in yellow soybeans. Theor. Appl. Genet. 104, 1086–1091.

    Article  PubMed  CAS  Google Scholar 

  • Shoemaker, R. C., lzin, K., Labate, J., Specht, J., Brummer, E. C., Olson, T., Young, N., Concibido, V., Wilcox, J., Tamulonis, J. P., Kochert, G. and Boerma, H. R. (1996) Genome duplication in soybean (Glycine subgenus soja). Genetics. 144, 329–338.

    PubMed  CAS  Google Scholar 

  • Shultz, J. L., and others. (2006) The soybean genome database (SoyGD): a browser for display a duplicated, polyploidy, regions and sequence tagged sites on integrated physical and genetic maps of Glycine max. Nucleic Acid Res. 34, D758–D765.

    Article  PubMed  CAS  Google Scholar 

  • Singh, R. J. and Hymowitz, T. (1999) Soybean genetic resources and crop improvement. Genome, 42, 605–616.

    Article  CAS  Google Scholar 

  • Song, Q. J., Marek, L. F., Shoemaker, R. C., Lark, K. G., Concibido, V. C., Delannay, X., Specht, J. E. and Cregan, P. B. (2004) A new integrated genetic linkage map of the soybean. Theor. Appl. Genet. 109, 122–128.

    Article  PubMed  CAS  Google Scholar 

  • Specht, J. E., Hume, D. J. and Kumudini, S. V. (1999) Soybean yield potential- A genetic and physiological perspective. Crop Sci. 39, 1560–1570.

    Google Scholar 

  • Specht, J.E., Germann, M., Markwell, J.P., Lark, K.G., Orf, J.H., Macrander, M., Chase, K., Chung, J., Graef, G.L. (2001) Soybean response to water: a QTL analysis of drought tolerance. Crop Sci. 41, 493–509.

    CAS  Google Scholar 

  • Spencer, M.M., Pantalone, V.R., Meyer, E.J., Landau-Ellis, D., and Hyten, D.L. (2003) Mapping the Fas locus controlling stearic acid content in soybean. Theor. Appl. Genet. 106, 615–619.

    PubMed  CAS  Google Scholar 

  • Spencer, M.M., Landau-Ellis, D., Meyer, E.J., and Pantalone, V.R. (2004) Molecular marker associated with linolenic acid content in soybean. JAOCS. 81, 559–562.

    Article  CAS  Google Scholar 

  • Takahashi, R,, Githiri, S., Hatayama, K., Dubouzet, E., Shimada, N., Aoki, T., Ayabe, S., Iwashina, T., Toda, K., and Matsumura, H. (2007) A single-base deletion in soybean flavonol synthase gene is associated with magenta flower color. Plant Mol. Biol. 63, 125–135.

    Article  PubMed  CAS  Google Scholar 

  • Tamulonis, J.P., Luzzi, B.M., Hussey, R.S., Parrott, W.A., and Boerma, H.R. (1997) RFLP mapping of resistance to southern root-knot nematode in soybean. Crop Sci. 37, 1903–1909.

    CAS  Google Scholar 

  • Tanksley, S.D., Grandillo, S., Fulton, T.M., Zamir, D., Eshed, Y., Petiard, V., Lopez, J., and Beck-Bunn, T. (1996) Advanced backcross QTL analysis in a cross between an elite processing line of tomato and its wild relative pimpinellifolium. Theor. Appl. Genet. 92, 213–224.

    Article  CAS  Google Scholar 

  • Tollenaar, M. (1994) Yield potential of maize: impact of stress tolerance. In: K.G. Cassman (Ed.), Breaking the yield barrier. Proceedings of workshop on rice yield potential in favorable environment. International Rice Research Institute, Manila, Philippines, pp. 103–109.

    Google Scholar 

  • Tuberosa, R., Gill, B. S. and Quarrie, S. A. (2002) Cereal genomics: ushering in a brave new world. Plant Mol. Biol. 48, 445–449.

    Article  PubMed  CAS  Google Scholar 

  • Tuberosa, R. and Salvi, S. (2006) Genomics-based approaches to improve drought tolerance of crops. Trends Plant Sci. 11, 405–412.

    Article  PubMed  CAS  Google Scholar 

  • VanToai, T.T., Martin, S.K., Chase, K., Boru, G., Schnipke, V., Schmitthenner, A.F., and Lark, K.G. (2001) Identification of a QTL associated with tolerance of soybean to soil waterlogging. Crop Sci. 41, 1247–1252.

    Google Scholar 

  • Varshney, R. K., Graner, A. Sorrells, M.E. (2005) Genomics-assisted breeding for crop improvement. Trends Plant Sci. 10, 621–630.

    Article  PubMed  CAS  Google Scholar 

  • Varshney, R. K., Hoisington, D.A. and Tyagi, A.K. (2006) Advances in cereal genomics and application in crop breeding. Trends Biotech. 24, 11.

    Google Scholar 

  • Voldeng, H.D., Cober, E.R., Hume, D.J., Gillard, C. and Morrison, M.J. (1997) Fifty-eight years of genetic improvement of short-season soybean cultivars. Crop Sci. 37, 428–431.

    Google Scholar 

  • von Korff, M., Wang, h., leon, J., and Pillen, K. (2005) AB-QTL analysis in spring barley. I. Detection of resistance genes against powdery mildew, leaf rust and scald introgressed from wild barley. Theor. Appl. Genet. 111, 583–590.

    Article  CAS  Google Scholar 

  • Wang, D., Graef, G.L., Procopiuk, A.M., and Diers, B.W. (2004) Identification of putative QTL that underline yield in interspecific soybean backcross populations. Theor. Appl. Genet. 108,458–467.

    Article  PubMed  CAS  Google Scholar 

  • Wang, Y., Xue, Y. and Li, J. (2005) Towards molecular breeding and improvement of rice in China. Trends Plant Sci. 10(12), 610–614.

    Article  PubMed  CAS  Google Scholar 

  • Wenzel, G. (2006) Molecular plant breeding: achievements in green biotechnology and future perspectives. Appl. Microbiol. Biotechnol. 70, 642–650.

    Article  PubMed  CAS  Google Scholar 

  • Wilcox, J. R. (2001) Sixty years of improvement in publicly developed elite soybean lines. Crop Sci. 49, 1711–1716.

    Google Scholar 

  • Wilcox, J.R., Schapaugh Jr, W.T., Bernard, R. L., Copper, R. L., Fehr, W.R. and Niehaus, M.H. (1979) Genetic improvement of soybeans in the Midwest. Crop Sci. 19, 803–805.

    Google Scholar 

  • Wilson, R. F. (2004) Seed Composition. In: H.R. Boerma and J. E. Specht (Eds), Soybeans: Improvement, Production, and Uses. Agronomy Monographs 3rd ed. No. 16, ASA-CSSA-SSSA, Madison, WI, USA, pp. 621–677.

    Google Scholar 

  • Winter, S.M., Shelp,B.J., Anderson, T.R., Welacky, T.W., and Rajcan, I. (2007) QTL associated with horizontal resistance to soybean cyst nematode in Glycine soja PI464925B. Theor. Appl. Genet. 114, 461–472.

    Article  PubMed  Google Scholar 

  • Wu, C., Sun, S., Nimmakayala, P., Santos, F. A., Meksem, K., Springman, R., Ding, K., Lightfoot, D. A. and Zhang, H-B. (2004) A BAC- and BIBAC-based physical map of the soybean genome. Genome Res. 14, 319–326.

    Article  PubMed  CAS  Google Scholar 

  • Xiao, J., Li, J., Grandillo, S., Ahn, S.N., Yuan, L., Tanksley, S.D., and McCouch, S.R. (1998) Identification of trait-improving quantitative trait loci alleles from a wild rice relatives, Oryza rufipogon. Genetics 150, 899–909.

    PubMed  CAS  Google Scholar 

  • Xu, Y., McCouch, S. R. and Zhang, Q. (2005) How can we use genomics to improve cereals with rice as a reference genome. Plant Mol. Biol. 59, 7–26.

    Article  PubMed  CAS  Google Scholar 

  • Yu, Y.G., Saghai Maroof, M.A., Buss, G.R., Maughan, P.J., and Tolin, S.A. (1994) RFLP and microsatellite mapping of a gene for soybean mosaic virus resistance. Phytopathology 84,60–64.

    Article  CAS  Google Scholar 

  • Yun, S.J., Gyenis, L., Hayes, P.M., Matus, I., Smith, K.P., Steffenson, B.J., and Muehlbauer, G.J. (2005) Quantitative trait loci for multiple disease resistance in wild barley. Crop Sci. 45, 2563–2572.

    Article  CAS  Google Scholar 

  • Zhao, T. J., and Gai, J. Y. (2006) Discovery of new male-sterile cytoplasm sources and development of a new cytoplasmic-nuclear male-sterile line in NJCMS3A in soybean. Euphytica 152,387–396.

    Article  CAS  Google Scholar 

  • Zou, J.J., Singh, R.J., and Hymowitz, T. (2003) Association of the yellow leaf (y10) mutant to soybean chromosome 3. J. Heredity. 94, 352–355.

    Article  CAS  Google Scholar 

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Pathan, M., Sleper, D.A. (2008). Advances in Soybean Breeding. In: Stacey, G. (eds) Genetics and Genomics of Soybean. Plant Genetics and Genomics: Crops and Models, vol 2. Springer, New York, NY. https://doi.org/10.1007/978-0-387-72299-3_8

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