Skip to main content

Incorporating geomicrobial processes in reactive transport models of subsurface environments

  • Chapter
Reactive Transport in Soil and Groundwater

Abstract

Reactive-transport models aim at a comprehensive, quantitative and, ultimately, predictive treatment of biogeochemical transformations and mass transfers in the subsurface. Not only do they provide environmental simulation tools, they can also be used to test new theoretical concepts or hypotheses. A major goal of the geochemistry group in Utrecht is to incorporate complex, microbially-driven reaction networks in reactive transport models, through a close collaboration between modelers and experimentalists. This paper gives an overview of some of the research activities we are carrying out in this area.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Chapter
USD 29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 169.00
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 219.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book
USD 219.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

Preview

Unable to display preview. Download preview PDF.

Unable to display preview. Download preview PDF.

References

  • Amman RI, Ludwig W, Schleifer KH (1995) Phylogenetic identification and in situ detection of individual microbial cells without cultivation. Microbiological Reviews, Vol. 59,pp 143–169

    Google Scholar 

  • Bonneville S, Van Cappellen P, Behrends T (2004) Microbial reduction of iron(III) oxyhydroxides: Effects of mineral solubility and availability. Chemical Geology, Vol. 212, pp 255–268

    Article  Google Scholar 

  • Chapelle FH (2000) Ground-Water Microbiology and Geochemistry. 2nd Ed. John Wiley & Sons, N.Y.

    Google Scholar 

  • Curtis GP (2003) Comparison of approaches for simulating reactive solute transport involving organic degradation reactions by multiple terminal electron acceptors. Computers & Geosciences, Vol.29, pp 319–329

    Article  Google Scholar 

  • Dale AW, Regnier P, Van Cappellen P (2005) Bioenergetic controls of anaerobic oxidation of methane in organic-rich marine sediments: A sensitivity analysis. American Journal of Science. Submitted

    Google Scholar 

  • Hoehler TM, Alperin MJ, Albert DB, Martens CS (1994) Field and laboratory studies of methane oxidation in an anoxic marine sediment — evidence for a methanogen-sulfate reducer consortium. Global Biogeochemical Cycles, Vol. 8, pp 451–463

    Article  Google Scholar 

  • Hyacinthe C, Van Cappellen P (2004) An authigenic iron phosphate phase in estuarine sediments: composition, formation and chemical reactivity. Marine Chemistry, Vol.91, pp 227–251

    Article  Google Scholar 

  • Jin Q, Bethke CM. (2002) Kinetics of electron transfer through the respiratory chain. Biophysical Journal, Vol.83, pp 1797–1808

    Google Scholar 

  • Laverman AM, Van Cappellen P, Meile C, Wieringa EB (2005) Rate distribution of denitrification in an estuarine sediment: Microprofiling and reactive transport modeling. Limnology & Oceanography. Submitted

    Google Scholar 

  • Martin-Nieto J, Flores E, Herrero A (1992) Biphasic kinetic behavior of nitrate reductase from heterocystous, nitrogen-fixing cyanobacteria. Plant Physiology, Vol.100, pp 157–163

    Google Scholar 

  • Mayer KU, Benner SG, Frind EO, Thornton SF, Lerner DN (2001) Reactive transport modeling of processes controlling the distribution and natural attenuation of phenolic compounds in a deep sandstone aquifer. Journal of Contaminant Hydrology, Vol.53, pp 342–368

    Article  Google Scholar 

  • Montgomery DC (1996) Design and Analysis of Experiments, Wiley, N.Y.

    Google Scholar 

  • Roden EE, Zachara JM (1996) Microbial reduction of crystalline iron(III) oxides: Influence of oxide surface area and potential for cell growth. Environmental Science and Technology, Vol.30, pp 1618–1628

    Article  Google Scholar 

  • Roychoudhury AN, Viollier E, Van Cappellen P (1998) A plug flow-through reactor for studying biogeochemical reactions in undisturbed aquatic sediments. Applied Geochemistry, Vol. 13, pp 269–280

    Article  Google Scholar 

  • Thullner M, Van Cappellen P, Regnier P (2005) Modeling the impact of microbial activity on redox dynamics in porous media. Geochimica Cosmochimica Acta, In press

    Google Scholar 

  • Ulrich GA, Breit GN, Cozzarelli IM, Suflita JM (2003) Sources of sulfate supporting anaerobic metabolism in a contaminated aquifer. Environmental Science and Technology, Vol. 37, pp 1093–1099

    Article  Google Scholar 

  • von Gunten U, Zobrist J (1993) Biogeochemical changes in groundwater-infiltrations systems: column studies. Geochimica et Cosmochimica Acta, Vol. 57, pp 3895–3906

    Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2005 Springer-Verlag Berlin Heidelberg

About this chapter

Cite this chapter

Regnier, P. et al. (2005). Incorporating geomicrobial processes in reactive transport models of subsurface environments. In: Nützmann, G., Viotti, P., Aagaard, P. (eds) Reactive Transport in Soil and Groundwater. Springer, Berlin, Heidelberg. https://doi.org/10.1007/3-540-26746-8_8

Download citation

Publish with us

Policies and ethics