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Ocean Colour Remote Sensing of Harmful Algal Blooms in the Benguela System

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Abstract

The Benguela, as a highly productive upwelling system, suffers from the occurrence of a variety of harmful algal blooms, most of which are associated with elevated biomass; a feature common to the shelf environment of upwelling systems. Most harmful blooms have in the past been attributed to one or another dinoflagellate species, but more recently harmful impacts have also been ascribed to other groups of phytoplankton, including diatom and autotrophic ciliate species. Typical bloom assemblages, forcing mechanisms and harmful impacts are outlined, and bloom types most amenable to detection with ocean colour radiometry are identified. Inherent and apparent optical properties of these algal assemblage types are described, and a preliminary evaluation is made of the suitability of available ocean colour data and algorithms. The evolution of several bloom events is described using various algorithms applied to ocean colour data from the Medium Resolution Imaging Spectrometer (MERIS), and recommendations are made about optimal ocean colour usage for high biomass algal blooms in coastal zones.

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References

  • Alvain S, Loisel H, Dessailly D (2012) Theoretical analysis of ocean color radiances anomalies and implications for phytoplankton groups detection in case 1 waters. Opt Express 20(2):1070–1083

    Article  Google Scholar 

  • Barlow R, Sessions H, Balarin M, Weeks S, Whittle C, Hutchings L (2005) Seasonal variation in phytoplankton in the southern Benguela: pigment indices and ocean colour. Afr J Mar Sci 27:275–287

    Article  Google Scholar 

  • Barlow RG (1982) Phytoplankton ecology in the southern Benguela Current. I. Biochemical composition. J Exp Mar Biol Ecol 63(3):209–227

    Article  Google Scholar 

  • Behrenfeld MJ, Westberry TK, Boss ES, O’Malley RT, Siegel DA, Wiggert JD, Franz BA, McClain CR, Feldman GC, Doney SC, Moore JK, Dall’Olmo G, Milligan AJ, Lima I, Mahowald N (2009) Satellite-detected Fluorescence reveals global physiology of Ocean Phytoplankton. Biogeosciences 6:779–794

    Article  Google Scholar 

  • Bernard S (2005). The bio-optical detection of harmful algal blooms. PhD Thesis. University of Cape Town

    Google Scholar 

  • Bernard S, Kudela R, Franks P, Fennel W, Kemp A, Fawcett A, Pitcher G (2006) The requirements for forecasting harmful algal blooms in the Benguela. In: Shannon V, Hempel G, Malanotte-Rizzoli P, Moloney C, Woods J (eds) Benguela: predicting a large marine ecosystem. Elsevier 14:273–294

    Google Scholar 

  • Bernard S, Probyn TA, Quirantes A (2009) Simulating the optical properties of phytoplankton cells using a two-layered spherical geometry. Biogeosci Discuss 6(1):1497–1563

    Article  Google Scholar 

  • Bidigare RR, Ondrusek ME, Morrow JH, Kiefer DA (1990) In vivo absorption properties of algal pigments. In: Spinrad RW (ed) Ocean optics X. Proc Soc Photo-Opt Instrum Eng 1302:90–302

    Google Scholar 

  • Botes L, Sym SD, Pitcher GC (2003) Karenia cristata sp. Nov. and Karenia bicuneiformis sp. Nov. (Gymnodiniales, Dinophyceae): two new Karenia species from the South African coast. Phycologia 42:563–571

    Article  Google Scholar 

  • Bracher A, Vountas M, Dinter T, Burrows JP, Röttgers R, Peeken I (2009) Quantitative observation of cyanobacteria and diatoms from space using PhytoDOAS on SCIAMACHY data. Biogeosciences 6:751–764. doi:10.5194/bg-6–751-2009.

    Article  Google Scholar 

  • Brown PC, Hutchings L (1987) The development and decline of phytoplankton blooms in the southern Benguela upwelling system. 1. Drogue movements, hydrography and bloom development. In: Payne AL, Gulland A, Brink KH (eds) The Benguela and comparable ecosystems. S Afr J Marine Sci 5:357–391

    Google Scholar 

  • Ciotti AM, Bricaud A (2006) Retrievals of a size parameter for phytoplankton and spectral light absorption by Colored Detrital Matter from water-leaving radiances at SeaWiFS channels in a continental shelf region off Brazil. Limnol Oceanogr Method 4:237–253

    Article  Google Scholar 

  • Cockcroft AC, Schoeman DS, Pitcher GC, Bailey GW, van Zyl DC (2000) A mass stranding, or “walkout” of west coast rock lobster Jasus lalandii in Elands Bay, South Africa: causes, results and implications. In: Von Kaupel Klein JC, Schram FR (eds) The biodiversity crises and crustacea. Crustacean Issues 11:362–688

    Google Scholar 

  • Copenhagen WJ (1953) The periodic mortality of fish in the Walvis region: a phenomenon within the Benguela Current. Division of Fisheries Investigational Report 14, p 35

    Google Scholar 

  • Dierssen H, Kudela RM, Ryan JP, Zimerman RC (2006) Red and black tides: Quantitative analysis of water-leaving radiance and perceived color for phytoplankton, colored dissolved organic matter, and suspended sediments. Limnol Oceanogr 51(6):2646–2659

    Article  Google Scholar 

  • Dupouy C, Benielli-Gary D, Neveux J, Dandonneau Y, Westberry TK (2011) An algorithm for detecting Trichodesmium surface blooms in the South Western Tropical Pacific. Biogeosciences 8:3631–3647. doi:10.5194/bg-8–3631-2011

    Article  Google Scholar 

  • Fawcett A, Pitcher GC, Bernard S, Cembella AD, Kudela RM (2007) Contrasting wind patterns and toxigenic phytoplankton in the southern Benguela upwelling system. Mar Ecol Prog Ser 348:19–31

    Article  Google Scholar 

  • Franks P (1992) Sink or swim: accumulation of biomass at fronts. Mar Ecol Prog Ser 82:1–12

    Article  Google Scholar 

  • Gordon HR, Wang M (1994) Retrieval of water-leaving radiance and aerosol optical thickness over the oceans with SeaWiFS: a preliminary algorithm. Appl Optics 33(3):443–452

    Article  Google Scholar 

  • Gower JFR, Doerffer R, Borstad GA (1999) Interpretation of the 685 nm peak in water-leaving radiance spectra in terms of fuorescence, absorption and scattering, and its observation by MERIS. Int J Remote Sens 20(9):1771–1786

    Article  Google Scholar 

  • Gregg WW, Carder KL (1990) A simple spectral solar Irradiance model for cloudless maritime atmospheres. Limnol Oceanogr 35(8):1657–1675

    Article  Google Scholar 

  • Henderiks J, Winter A, Elbrächter M, Feistel R, van der Plas A, Nausch G, Barlow R (2012) Environmental controls on Emiliania huxleyi morphotypes in the Benguela coastal upwelling system (SE Atlantic). Mar Ecol Prog Ser 448:51–66

    Article  Google Scholar 

  • Hubbart B, Pitcher GC, Krock B, Cembella AD (2012) Toxigenic phytoplankton and concomitant toxicity in the mussel Choromytilus meridionalis off the west coast of South Africa. Harmful Algae 20:30–41

    Article  Google Scholar 

  • IOCCG (2006) Remote sensing of inherent optical properties: Fundamentals, tests of algorithms, and applications. IOCCG, Dartmouth, pp 1–126

    Google Scholar 

  • Jackson T, Bouman HA, Sathyendranath S, Devred E (2011) Regional-scale changes in diatom distribution in the Humboldt upwelling system as revealed by remote sensing: implications for fisheries. ICES J Mar Sci 68(4):729–738

    Article  Google Scholar 

  • Johnsen G, Samset O, Granskog L, Sakshaug E (1994) In-vivo absorption characteristics in 10 classes of bloom-forming phytoplankton: taxonomic characteristics and responses to photoadaptation by means of discriminant and HPLC analysis. Mar Ecol Prog Ser 105(1/2):149–157

    Article  Google Scholar 

  • Kahru M, Kudela R, Manzano-Sarabia M, Mitchell BG (2009) Trends in primary production in the California Current detected with satellite data. J Geophys Res 114(CO2004):7

    Google Scholar 

  • Kostadinov TS, Siegel DA, Maritorena S (2010) Global variability of phytoplankton functional types from space: assessment via the particle size distribution. Biogeosciences 7:3239–3257

    Article  Google Scholar 

  • Krock B, Alpermann T, Tillmann U, Pitcher GC, Cembella AD (2008) Yessotoxin profiles of the marine dinoflagellates Protoceratium reticulatum and Gonyaulax spinifera. In: Moestrup O et al (eds) Proceedings of the 12th International Conference on Harmful Algae. International Society for the Study of Harmful Algae and Intergovernmental Oceanographic Commission of UNESCO, Copenhagen

    Google Scholar 

  • Kudela R, Pitcher G, Probyn T, Figueiras F, Moita T, Trainer V (2005) Harmful algal blooms in coastal upwelling systems. Oceanography 18:84–197

    Article  Google Scholar 

  • Kudela RM, Garfield N, Bruland KW (2006) Bio-optical signatures and biogeochemistry from intense upwelling and relaxation in coastal California. Deep-Sea Res Part II 53(25–26):2999–3022

    Article  Google Scholar 

  • Kudela RM, Seeyave S, Cochlan W (2010) The role of nutrients in regulation and promotion of harmful algal blooms in upwelling systems. Prog Oceanogr 85:122–135

    Article  Google Scholar 

  • Kyewalyanga M, Sathyendranath S, Platt T (2002) Effect of Mesodinium rubrum (= Myrionecta rubra) on the action and absorption spectra of phytoplankton in a coastal marine inlet. J Plankton Res 24(7):687–702

    Article  Google Scholar 

  • Lavaud J, Rousseau B, van Gorkom HJ, Etienne AL (2002) Influence of the diadinoxanthin pool size on photoprotection in the marine planktonic diatom Phaeodactylum tricornutum. Plant Physiol 129:1398–1406

    Article  Google Scholar 

  • Lohrenz SE, Weidemann AD, Tuel M (2003) Phytoplankton spectral absorption as influenced by community size structure and pigment composition. J Plankton Res 25(1):33–61

    Article  Google Scholar 

  • MacIntyre HL, Lawrenz E, Richardson TL (2010) Taxonomic discrimination of phytoplankton by spectral fluorescence. In: Suggett DJ et al (eds) Chlorophyll a fluorescence in aquatic sciences: methods and applications. Developments in Applied Phycology 4, Springer, p 129

    Google Scholar 

  • Margalef R (1978) Life-forms of phytoplankton as survival alternatives in an unstable environment. Oceanol Acta 1:193–509

    Google Scholar 

  • Matthews MW, Bernard S, Robertson L (2012) An algorithm for detecting trophic status (chlorophyll-a), cyanobacterial-dominance, surface scums and floating vegetation in inland and coastal waters. Remote Sens Environ 124:637–652

    Article  Google Scholar 

  • McGillicuddy DJ Jr, Anderson DM, Solow AR, Townsend DW (2005). Interannual variability of Alexandrium fundyense abundance and shellfish toxicity in the Gulf of Maine. Deep Sea Res Part II 52(19–21):2843–2855

    Article  Google Scholar 

  • McKinna LIW, Furnas MJ, Ridd PV (2011) A simple, binary classification algorithm for the detection of Trichodesmium spp. within the Great Barrier Reef using MODIS imagery. Limnol Oceanogr Methods 9:50–66

    Google Scholar 

  • Mitchell-Innes BA, Walker DR (1991) Short-term variability during an Anchor Station study in the southern Benguela upwelling system. Phytoplankton production and biomass in relation to species changes. Prog Oceanogr 28(1–2):65–89

    Article  Google Scholar 

  • Moore G, Lavender S (2011) Algorithm identification: Case II. S Bright pixel atmospheric correction MERIS ATBD Plymouth Marine Laboratory, Issue 5.0

    Google Scholar 

  • Morel A, Bricaud A (1981) Theoretical results concerning light absorption in a discrete medium, and application to specific absorption of phytoplankton. Deep-Sea Res 28A(11):1375–1393

    Article  Google Scholar 

  • Morel A, Prieur L (1977) Analysis of variations in ocean color. Limnol Oceanogr 22(4):709–722

    Article  Google Scholar 

  • Morel A, Claustre H, Antoine D, Gentili B (2007) Natural variability of bio-optical properties in Case 1 waters: attenuation and reflectance within the visible and near-UV spectral domains, as observed in South Pacific and Mediterranean waters. Biogeosciences 4:913–925

    Article  Google Scholar 

  • Nelder JA, Mead R (1965) A Simplex Method for Function Minimization. Comp J 7:308–313

    Article  Google Scholar 

  • Nymark M, Valle KC, Brembu T, Hancke K, Winge P et al (2009) An integrated analysis of molecular acclimation to high light in the marine diatom Phaeodactylum tricornutum. PLoS ONE 4(11):e7743

    Article  Google Scholar 

  • Pitcher GC, Calder D (2000) Harmful Algal Blooms of the southern Benguela current: a review and appraisal of monitoring from 1989–1997. S Afr J Mar Sci 22:255–271

    Article  Google Scholar 

  • Pitcher GC, Probyn TA (2011) Anoxia in southern Benguela during the autumn of 2009 and its linkage to a bloom of the dinoflagellate Ceratium balechii. Harmful Algae 11:23–32

    Article  Google Scholar 

  • Pitcher GC, Weeks SJ (2006) The variability and potential for prediction of Harmful Algal Blooms in the southern Benguela ecosystem. In: Shannon, V, Hempel G, Malanotte-Rizzoli P, Moloney C, Woods J (eds) Benguela: Predicting a large marine ecosystem. Elsevier 14:125–146

    Google Scholar 

  • Pitcher GC, Bernard S, Fawcett A (2008a) Real-time coastal observing systems for ecosystem dynamics and harmful algal blooms: the needs and expectations of users. In: Babin M, Roesler CS, Cullen JJ (eds) Real-time coastal observing systems for marine ecosystem dynamics and harmful algal blooms. UNESCO, Paris, France

    Google Scholar 

  • Pitcher GC, Bernard S, Ntuli J (2008b) Contrasting bays and red tides in the southern Benguela upwelling system. Oceanography 21(3):82–91

    Article  Google Scholar 

  • Pitcher GC, Krock B, Cembella AD (2011) Accumulation of diarrhetic shellfish poisoning toxins in the oyster Crassostrea gigas and the mussel Choromytilus meridionalis in the southern Benguela ecosystem. Afr J Mar Sci 33:273–281

    Article  Google Scholar 

  • Probyn TA, Pitcher GC, Pienaar RN, Nuzzi R (2001) Brown tides and mariculture in Saldanha Bay, South Africa. Mar Pollut Bull 42(5):405–408

    Article  Google Scholar 

  • Probyn TA, Bernard S, Pitcher GC, Pienaar RN (2010) Ecophysiological studies on Aureococcus anophagefferens blooms in Saldanha Bay, South Africa. Harmful Algae 9:123–133

    Article  Google Scholar 

  • Quirantes A, Bernard S (2006) Light-scattering methods for modelling algal particles as a collection of coated and/or nonspherical scatterers. J Quant Spectrosc Radiat Transfer 100(1–3):315–324

    Article  Google Scholar 

  • Roesler CS, Boss E (2003) Spectral beam attenuation coefficient retrieved from ocean color inversion. Geophys Res Lett 30(9):1–4

    Article  Google Scholar 

  • Roy S, Sathyendranath S, Platt T (2011) Retrieval of phytoplankton size from bio-optical measurements: theory and applications. Journal of the Royal Society Interface 8(58):650–660

    Article  Google Scholar 

  • Schiller H, Doerffer R (1999) Neural network for emulation of an inverse model operational derivation of Case II water properties from MERIS data. Int J Remote Sens 20(9):1735–1746

    Article  Google Scholar 

  • Schiller H, Doerffer R (2005) Improved determination of coastal water constituent concentrations from MERIS data. IEEE Trans Geosci Remote Sens 43(7):1585–1591

    Article  Google Scholar 

  • Smayda TJ (1997) What is a bloom? A commentary. Limnol Oceanogr 42:1132–1136

    Article  Google Scholar 

  • Smayda TJ (2002) Turbulence, watermass stratification and harmful algal blooms: an alternative view and frontal zones as “pelagic seed banks”. Harmful Algae 1:95–112

    Article  Google Scholar 

  • Tomlinson MC, Wynne TT, Stumpf RP (2009) An evaluation of remote sensing techniques for enhanced detection of the toxic dinoflagellate, Karenia brevis. Remote Sens Environ 113(3):598–609

    Article  Google Scholar 

  • Trainer VL, Pitcher GC, Reguera B, Smayda TJ (2010) The distribution and impacts of harmful algal bloom species in eastern boundary upwelling systems. Prog Oceanogr 85:33–52

    Article  Google Scholar 

  • Van derLCD, Freón P, Hutchings L, Roy C, Bailey GW, Bartholomae C, Cockcroft AC, Field JG, Peard KR, Van derPAK (2006) Forecasting shelf processes of relevance to living marine resources in the BCLME. In: Shannon, V, Hempel G, Malanotte-Rizzoli P, Moloney C, Woods J (eds) Benguela: Predicting a large marine ecosystem. Elsevier 14:309–347

    Google Scholar 

  • Volten AH, Haan JFD, Hovenier JW, Schreurs R, Vassen W, Dekker AG, Hoogenboom J et al (1998) Laboratory measurements of angular distributions of light scattered by Phytoplankton and Silt. Limnol Oceanogr 43(6):1180–1197

    Article  Google Scholar 

  • Wang M (2006) Aerosol polarization effects on atmospheric correction and aerosol retrievals in ocean color remote sensing. Appl Optics 45(35):8951–8963

    Article  Google Scholar 

  • Weeks SJ, Pitcher GC, Bernard S (2004) Satellite monitoring of the evolution of a coccolithophorid bloom in the southern Benguela ecosystem. Oceanography 17:83–89

    Article  Google Scholar 

  • Weeks SJ, Barlow R, Roy C, Shillington FA (2006) Remotely sensed variability of temperature and chlorophyll in the southern Benguela: upwelling frequency and phytoplankton response. Afr J Mar Sci 28:493–509

    Article  Google Scholar 

  • Whitmire AL, Pegau WS, Karp-boss L, Boss E, Cowles TJ (2010) Spectral backscattering properties of marine phytoplankton cultures. Opt Express 18(14):1680–1690

    Article  Google Scholar 

  • Zhou W, Wang G, Sun Z, Cao W, Xu Z, Hu S, Zhao J (2012) Variations in the optical scattering properties of phytoplankton cultures. Opt Express 20:11189–11206

    Article  Google Scholar 

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Bernard, S. et al. (2014). Ocean Colour Remote Sensing of Harmful Algal Blooms in the Benguela System. In: Barale, V., Gade, M. (eds) Remote Sensing of the African Seas. Springer, Dordrecht. https://doi.org/10.1007/978-94-017-8008-7_10

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