Abstract
Classification of cell types in context of the architecture in tissue specimen is the basis of diagnostic pathology and decisions for comprehensive investigations rely on a valid interpretation of tissue morphology. Especially visual examination of bone marrow cells takes a considerable amount of time and inter-observer variability can be remarkable. In this work, we propose a novel rotation-invariant learning scheme for multi-class Echo State Networks (ESNs), which achieves very high performance in automated bone marrow cell classification. Based on representing static images as temporal sequence of rotations, we show how ESNs robustly recognize cells of arbitrary rotations by taking advantage of their short-term memory capacity.
The authors would like to thank Michael Pfeiffer from the Institute of Neuroinformatics, University of Zurich and ETH Zurich, for fruitful discussions.
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References
Al-Janabi, S., Huisman, A., Van Diest, P.J.: Digital pathology: current status and future perspectives. Histopathology 61(1), 1–9 (2011)
Gurcan, M.N., Boucheron, L.E., Can, A., Madabhushi, A., Rajpoot, N.M., Yener, B.: Histopathological image analysis: a review. IEEE Rev. Biomed. Eng. 2, 147–171 (2009)
Staroszczyk, T., Osowski, S., Markiewicz, T.: Comparative analysis of feature selection methods for blood cell recognition in leukemia. In: Perner, P. (ed.) MLDM 2012. LNCS, vol. 7376, pp. 467–481. Springer, Heidelberg (2012)
Markiewicz, T., Osowski, S., Marianska, B., Moszczynski, L.: Automatic recognition of the blood cells of myelogenous leukemia using SVM. In: IJCNN, pp. 2496–2501 (2005)
Theera-Umpon, N., Dhompongsa, S.: Morphological granulometric features of nucleus in automatic bone marrow white blood cell classification. IEEE Trans. Inf. Technol. Biomed. 11(3), 353–359 (2007)
Sabino, D.M.U., Costa, L.F., Rizzatti, E.G., Zago, M.A.: Toward leukocyte recognition using morphometry, texture and color. In: ISBI, pp. 121–124 (2004)
Sjöström, P.J., Frydel, B.R., Wahlberg, L.U.: Artificial neural network-aided image analysis system for cell counting. Cytometry 36(1), 18–26 (1999)
Habibzadeh, M., Krzyżak, A., Fevens, T.: White blood cell differential counts using convolutional neural networks for low resolution images. In: Rutkowski, L., Korytkowski, M., Scherer, R., Tadeusiewicz, R., Zadeh, L.A., Zurada, J.M. (eds.) ICAISC 2013, Part II. LNCS, vol. 7895, pp. 263–274. Springer, Heidelberg (2013)
Ballarò, B., Florena, A.M., Franco, V., Tegolo, D., Tripodo, C., Valenti, C.: An automated image analysis methodology for classifying megakaryocytes in chronic myeloproliferative disorders. Med. Image Anal. 12(6), 703–712 (2008)
Nilsson, B., Heyden, A.: Segmentation of complex cell clusters in microscopic images: Application to bone marrow samples. Cytometry A 66A(1), 24–31 (2005)
Jaeger, H.: The“echo state”approach to analysing and training recurrent neural networks - with an erratum note. GMD Report 148 (2001)
Maass, W., Natschläger, T., Markram, H.: Real-time computing without stable states: A new framework for neural computation based on perturbations. Neural Comput. 14(11), 2531–2560 (2002)
Woodward, A., Ikegami, T.: A reservoir computing approach to image classification using coupled echo state and back-propagation neural networks. In: ICIVC, pp. 543–458 (2011)
Lukoševičius, M., Jaeger, H.: Reservoir computing approaches to recurrent neural network training. Comp. Sci. Review 3(3), 127–149 (2009)
Lukoševičius, M.: A practical guide to applying echo state networks. In: Montavon, G., Orr, G.B., Müller, K.-R. (eds.) Neural Networks: Tricks of the Trade, 2nd edn. LNCS, vol. 7700, pp. 659–686. Springer, Heidelberg (2012)
Verstraeten, D., Dambre, J., Dutoit, X., Schrauwen, B.: Memory versus non-linearity in reservoirs. In: IJCNN, pp. 1–8 (2010)
Kainz, P., Mayrhofer-Reinhartshuber, M., Burgsteiner, H., Asslaber, M., Ahammer, H.: Echo state networks for granulopoietic cell recognition in histopathological images of human bone marrow. Biomedizinische Technik 59(S1), S492–S495 (2014)
Steil, J.J.: Online reservoir adaptation by intrinsic plasticity for backpropagation-decorrelation and echo state learning. Neural Networks 20(3), 353–364 (2007)
Werbos, P.J.: Backpropagation through time: what it does and how to do it. Proc. IEEE 78(10), 1550–1560 (1990)
LeCun, Y., Kavukcuoglu, K., Farabet, C.: Convolutional networks and applications in vision. In: ISCAS, pp. 253–256 (2010)
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Kainz, P., Burgsteiner, H., Asslaber, M., Ahammer, H. (2015). Robust Bone Marrow Cell Discrimination by Rotation-Invariant Training of Multi-class Echo State Networks. In: Iliadis, L., Jayne, C. (eds) Engineering Applications of Neural Networks. EANN 2015. Communications in Computer and Information Science, vol 517. Springer, Cham. https://doi.org/10.1007/978-3-319-23983-5_36
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DOI: https://doi.org/10.1007/978-3-319-23983-5_36
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