Transcriptome Analyses to Investigate the Pathogenesis of RNA Splicing Factor Retinitis Pigmentosa

  • Michael H. Farkas
  • Greg R. Grant
  • Eric A. Pierce
Conference paper

DOI: 10.1007/978-1-4614-0631-0_65

Part of the Advances in Experimental Medicine and Biology book series (AEMB, volume 723)
Cite this paper as:
Farkas M.H., Grant G.R., Pierce E.A. (2012) Transcriptome Analyses to Investigate the Pathogenesis of RNA Splicing Factor Retinitis Pigmentosa. In: LaVail M., Ash J., Anderson R., Hollyfield J., Grimm C. (eds) Retinal Degenerative Diseases. Advances in Experimental Medicine and Biology, vol 723. Springer, Boston, MA

Abstract

RNA-splicing factor retinitis pigmentosa (RP) is caused by mutations in components of the spliceosome. RP is an inherited blinding disorder characterized by late-onset retinal degeneration. Currently, mutations in five genes that encode components of the spliceosome have been identified to cause autosomal dominant RP. These are the pre-mRNA processing factors 3, 8, and 31 (PRPF3, 8, and 31), RP9, and SNRNP200. It is unknown how mutations in these ubiquitously expressed genes lead to retina-specific disease. It is hypothesized that mutations in these genes lead to aberrant splicing of pre-mRNA, which in turn causes retinal degeneration. To fully investigate this hypothesis requires the ability to accurately interrogate the transcriptomes of the affected tissue. The recent development of next-generation sequencing-based RNA sequencing (RNA-seq) makes these types of studies possible. This chapter will focus on the RNA splicing factor forms of RP and the application of RNA-seq to study the pathogenesis of these diseases.

Keywords

RNA-seq Next-generation sequencing Retinitis pigmentosa RNA splicing factors Prpf Transcriptome 

Copyright information

© Springer Science+Business Media, LLC 2012

Authors and Affiliations

  • Michael H. Farkas
    • 1
  • Greg R. Grant
    • 2
  • Eric A. Pierce
    • 1
  1. 1.Ocular Genomics Institute, Berman Gund Laboratory, Department of OphthalmologyMassachusetts Eye and Ear InfirmaryBostonUSA
  2. 2.Penn Center for BioinformaticsUniversity of PennsylvaniaPhiladelphiaUSA

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