Abstract
Web portals enable sharing, execution and monitoring of scientific workflows, but usually depend on external development systems, with notations, which strive to support general workflows, but are still too complex for every-day use by biologists. The distinction between web-based and non-web based tools is likely to further irritate users. We extend our work on collaborative workflow design, by introducing a web-based scientific workflow system, that enables easy-to-use semantic service composition with a domain specific workflow notation.
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References
Taylor, I.J., Deelman, E., Gannon, D.B., Shields, M.: Workflows for e-Science: Scientific Workflows for Grids. Springer, New York (2006)
OASIS: Web Services Business Process Execution Language Version 2.0 (April 2007), http://docs.oasis-open.org/wsbpel/2.0/wsbpel-v2.0.pdf (last accessed October 24, 2007)
Held, M., Blochinger, W.: Structured collaborative workflow design. Future Generation Computer Systems 25(6), 638–653 (2009)
Gil, Y., Deelman, E., Ellisman, M., Fahringer, T., Fox, G., Gannon, D., Goble, C., Livny, M., Moreau, L., Myers, J.: Examining the Challenges of Scientific Workflows. IEEE Computer 40(12), 24–32 (2007)
Barker, A., van Hemert, J.: Scientific Workflow: A Survey and Research Directions. In: Wyrzykowski, R., Dongarra, J., Karczewski, K., Wasniewski, J. (eds.) PPAM 2007. LNCS, vol. 4967, pp. 746–753. Springer, Heidelberg (2008)
Gibson, A., Gamble, M., Wolstencroft, K., Oinn, T., Goble, C.: The data playground: An intuitive workflow specification environment. In: E-SCIENCE 2007: Proceedings of the Third IEEE International Conference on e-Science and Grid Computing, pp. 59–68. IEEE Computer Society, Washington (2007)
Wilkinson, M.D., Links, M.: BioMOBY: an open-source biological web services proposal. Briefings In Bioinformatics 3(4), 331–341 (2002)
The BioMoby Consortium: Interoperability with Moby 1.0 It’s better than sharing your toothbrush! Briefings In Bioinformatics 9(3) (2008)
Carrere, S., Gouzy, J.: REMORA: a pilot in the ocean of BioMoby web-services. Bioinformatics 22(7), 900–901 (2006)
Bartocci, E., Corradini, F., Merelli, E., Scortichini, L.: BioWMS: a web-based Workflow Management System for bioinformatics. BMC Bioinformatics 8(1) (2007)
Oinn, T., Addis, M., Ferris, J., Marvin, D., Senger, M., Greenwood, M., Carver, T., Glover, K., Pocock, M.R., Wipat, A., Li, P.: Taverna: a tool for the composition and enactment of bioinformatics workflows. Bioinformatics 20(17), 3045–3054 (2004)
Lanzén, A., Oinn, T.: The Taverna Interaction Service. Bioinformatics 24(8), 1118–1120 (2008)
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Held, M., Blochinger, W., Werning, M. (2009). E-Biology Workflows with Calvin . In: Vossen, G., Long, D.D.E., Yu, J.X. (eds) Web Information Systems Engineering - WISE 2009. WISE 2009. Lecture Notes in Computer Science, vol 5802. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-642-04409-0_56
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DOI: https://doi.org/10.1007/978-3-642-04409-0_56
Publisher Name: Springer, Berlin, Heidelberg
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