Mass Spectrometry Data Analysis in Proteomics

Editors:

ISBN: 978-1-58829-563-7 (Print) 978-1-59745-275-5 (Online)

Table of contents (18 protocols)

  1. Front Matter

    Pages i-x

  2. No Access

    Book Protocol

    Pages 1-35

    Introduction to Proteomics

  3. No Access

    Book Protocol

    Pages 37-48

    Extracting Monoisotopic Single-Charge Peaks From Liquid Chromatography-Electrospray Ionization-Mass Spectrometry

  4. No Access

    Book Protocol

    Pages 49-60

    Calibration of Matrix-Assisted Laser Desorption/Ionization Time-of-Flight Peptide Mass Fingerprinting Spectra

  5. No Access

    Book Protocol

    Pages 61-75

    Protein Identification by Peptide Mass Fingerprinting

  6. No Access

    Book Protocol

    Pages 77-86

    Generating Unigene Collections of Expressed Sequence Tag Sequences for Use in Mass Spectrometry Identification

  7. No Access

    Book Protocol

    Pages 87-119

    Protein Identification by Tandem Mass Spectrometry and Sequence Database Searching

  8. No Access

    Book Protocol

    Pages 121-138

    Virtual Expert Mass Spectrometrist v3.0

  9. No Access

    Book Protocol

    Pages 139-152

    Quantitation With Virtual Expert Mass Spectrometrist

  10. No Access

    Book Protocol

    Pages 153-168

    Sequence Handling by Sequence Analysis Toolbox v1.0

  11. No Access

    Book Protocol

    Pages 169-194

    Interpretation of Collision-Induced Fragmentation Tandem Mass Spectra of Posttranslationally Modified Peptides

  12. No Access

    Book Protocol

    Pages 195-207

    Retention Time Prediction and Protein Identification

  13. No Access

    Book Protocol

    Pages 209-218

    Quantitative Proteomics by Stable Isotope Labeling and Mass Spectrometry

  14. No Access

    Book Protocol

    Pages 219-239

    Quantitative Proteomics for Two-Dimensional Gels Using Difference Gel Electrophoresis

  15. No Access

    Book Protocol

    Pages 241-259

    Proteomic Data Exchange and Storage

  16. No Access

    Book Protocol

    Pages 261-270

    Proteomic Data Exchange and Storage

  17. No Access

    Book Protocol

    Pages 271-287

    Organization of Proteomics Data With YassDB

  18. No Access

    Book Protocol

    Pages 289-301

    Analysis of Carbohydrates by Mass Spectrometry

  19. No Access

    Book Protocol

    Pages 303-305

    Useful Mass Spectrometry Programs Freely Available on the Internet

  20. Back Matter

    Pages 307-320