Table of contents (16 chapters)

1. Front Matter

   Pages i-xii

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2. 

   Book Chapter

   Pages 1-15

   So Many Repeats and So Little Time: How to Classify Transposable Elements

   • Thomas Wicker
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3. 

   Book Chapter

   Pages 17-39

   Transposable Element Annotation in Completely Sequenced Eukaryote Genomes

   • Timothée Flutre,
   • Emmanuelle Permal,
   • Hadi Quesneville
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4. 

   Book Chapter

   Pages 41-58

   Using Nextgen Sequencing to Investigate Genome Size Variation and Transposable Element Content

   • Concepcion Muñoz-Diez,
   • Clémentine Vitte,
   • Jeffrey Ross-Ibarra
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5. 

   Book Chapter

   Pages 59-70

   Genome-Wide Analysis of Transposition Using Next Generation Sequencing Technologies

   • Moaine Elbaidouri,
   • Olivier Panaud
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6. 

   Book Chapter

   Pages 71-88

   Hitching a Ride: Nonautonomous Retrotransposons and Parasitism as a Lifestyle

   • Alan H. Schulman
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7. 

   Book Chapter

   Pages 89-112

   Plant Endogenous Retroviruses? A Case of Mysterious ORFs

   • Howard M. Laten,
   • Garen D. Gaston
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8. 

   Book Chapter

   Pages 113-124

   MITEs, Miniature Elements with a Major Role in Plant Genome Evolution

   • Hélène Guermonprez,
   • Elizabeth Hénaff,
   • Marta Cifuentes
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9. 

   Book Chapter

   Pages 125-145

   Glue for Jumping Elements: Epigenetic Means for Controlling Transposable Elements in Plants

   • Thierry Pélissier,
   • Olivier Mathieu
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10. 

    Book Chapter

    Pages 147-168

    Responses of Transposable Elements to Polyploidy

    • Christian Parisod,
    • Natacha Senerchia
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11. 

    Book Chapter

    Pages 169-192

    Noise or Symphony: Comparative Evolutionary Analysis of Sugarcane Transposable Elements with Other Grasses

    • Nathalia de Setta,
    • Cushla J. Metcalfe,
    • Guilherme M. Q. Cruz
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12. 

    Book Chapter

    Pages 193-217

    Helitron Proliferation and Gene-Fragment Capture

    • Yubin Li,
    • Hugo K. Dooner
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13. 

    Book Chapter

    Pages 219-251

    Transposable Element Exaptation in Plants

    • Douglas R. Hoen,
    • Thomas E. Bureau
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14. 

    Book Chapter

    Pages 253-271

    SINE Exaptation as Cellular Regulators Occurred Numerous Times During Eukaryote Evolution

    • Jean-Marc Deragon
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15. 

    Book Chapter

    Pages 273-296

    LTR Retrotransposons as Controlling Elements of Genome Response to Stress?

    • Quynh Trang Bui,
    • Marie-Angèle Grandbastien
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16. 

    Book Chapter

    Pages 297-312

    Rider Transposon Insertion and Phenotypic Change in Tomato

    • Ning Jiang,
    • Sofia Visa,
    • Shan Wu,
    • Esther van der Knaap
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17. 

    Book Chapter

    Pages 313-324

    Retrotransposons and the Eternal Leaves

    • Antonella Furini
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18. Back Matter

    Pages 325-330

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