Bioinformatics and Biomedical Engineering

1. Front Matter

   Pages I-XXXVI

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2. Computational Genomics

   1. Front Matter

      Pages 1-1

      PDF

   2. Investigation of DNA Sequences Utilizing Frequency-Selective Nanopore Structures

      • Ali Hilal-Alnaqbi, Mahmoud Al Ahmad, Tahir A. Rizvi, Farah Mustafa

      Pages 3-11

   3. Uropathogenic Escherichia coli: An Ideal Resource for DNA Microarray Probe Designing

      • Payam Behzadi, Elham Behzadi

      Pages 12-19

   4. Lost Strings in Genomes: What Sense Do They Make?

      • Michael Sadovsky, Jean-Fred Fontaine, Miguel A. Andrade-Navarro, Yury Yakubailik, Natalia Rudenko

      Pages 20-29

   5. Comprehensive Study of Instable Regions in Pseudomonas Aeruginosa

      • Dan Wang, Jingyu Li, Lusheng Wang

      Pages 30-40

   6. Breathogenomics: A Computational Architecture for Screening, Early Diagnosis and Genotyping of Lung Cancer

      • Emmanuel Adetiba, Marion O. Adebiyi, Surendra Thakur

      Pages 41-49

   7. Mixed-Integer Programming Model for Profiling Disease Biomarkers from Gene Expression Studies

      • André M. Santiago, Miguel Rocha, António Dourado, Joel P. Arrais

      Pages 50-61

   8. Assembly of Gene Expression Networks Based on a Breast Cancer Signature

      • Dimitrios Apostolos Chalepakis Ntellis, Ekaterini S. Bei, Dimitrios Kafetzopoulos, Michalis Zervakis

      Pages 62-73

   9. Pairwise and Incremental Multi-stage Alignment of Metagenomes: A New Proposal

      • Esteban Pérez-Wohlfeil, Oscar Torreno, Oswaldo Trelles

      Pages 74-80

   10. An Expanded Association Approach for Rare Germline Variants with Copy-Number Alternation

       • Yu Geng, Zhongmeng Zhao, Daibin Cui, Tian Zheng, Xuanping Zhang, Xiao Xiao et al.

       Pages 81-94

   11. Parallelizing Partial Digest Problem on Multicore System

       • Hazem M. Bahig, Mostafa M. Abbas, M. M. Mohie-Eldin

       Pages 95-104

3. Computational Proteomics

   1. Front Matter

      Pages 105-105

      PDF

   2. Prediction of Calmodulin-Binding Proteins Using Short-Linear Motifs

      • Yixun Li, Mina Maleki, Nicholas J. Carruthers, Luis Rueda, Paul M. Stemmer, Alioune Ngom

      Pages 107-117

   3. Data Mining the Protein Data Bank to Identify and Characterise Chameleon Coil Sequences that Form Symmetric Homodimer β-Sheet Interfaces

      • Johanna Laibe, Melanie Broutin, Aaron Caffrey, Barbara Pierscionek, Jean-Christophe Nebel

      Pages 118-126

   4. Associating Gene Ontology Terms with Pfam Protein Domains

      • Seyed Ziaeddin Alborzi, Marie-Dominique Devignes, David W. Ritchie

      Pages 127-138

   5. 3D Protein-Structure-Oriented Discovery of Clinical Relation Across Chronic Lymphocytic Leukemia Patients

      • Konstantinos Mochament, Andreas Agathangelidis, Eleftheria Polychronidou, Christos Palaskas, Elias Kalamaras, Panagiotis Moschonas et al.

      Pages 139-150

   6. Application of a Membrane Protein Structure Prediction Web Service GPCRM to a Gastric Inhibitory Polypeptide Receptor Model

      • Ewelina Rutkowska, Przemyslaw Miszta, Krzysztof Mlynarczyk, Jakub Jakowiecki, Pawel Pasznik, Slawomir Filipek et al.

      Pages 151-162

   7. In Silico Prediction of 3D Structure of Anopheles Gambiae ABCC12 Protein

      • Marion O. Adebiyi, Efejiro Ashano, Emmanuel Adetiba

      Pages 163-172

   8. Exploring Symmetric Substructures in Protein Interaction Networks for Pairwise Alignment

      • Ahed Elmsallati, Swarup Roy, Jugal K. Kalita

      Pages 173-184

This two volume set LNBI 10208 and LNBI 10209 constitutes the proceedings of the 5th International Work-Conference on Bioinformatics and Biomedical Engineering, IWBBIO 2017, held in Granada, Spain, in April 2017.

The 122 papers presented were carefully reviewed and selected from 309 submissions. The scope of the conference spans the following areas: advances in computational intelligence for critical care; bioinformatics for healthcare and diseases; biomedical engineering; biomedical image analysis; biomedical signal analysis; biomedicine; challenges representing large-scale biological data; computational genomics; computational proteomics; computational systems for modeling biological processes; data driven biology - new tools, techniques and resources; eHealth; high-throughput bioinformatic tools for genomics; oncological big data and new mathematical tools; smart sensor and sensor-network architectures; time lapse experiments and multivariate biostatistics.

• bio-inspired computing
• cloud computing
• e-health
• health informatics
• systems biology
• augmented reality
• big data
• bioinformatics
• biomedical engineering
• computational biology
• computational genomics
• computational proteomics
• computer aided surgery
• constraint programming
• data mining
• genetic algorithm
• health care information systems
• life and medical sciences
• medical technologies
• metabolomics / metabonomics

• Universidad de Granada, Granada, Spain

  Ignacio Rojas, Francisco Ortuño

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